mRNA_P-littoralis_Contig743.21.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig743.21.1
Unique NamemRNA_P-littoralis_Contig743.21.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig743.21.1 vs. uniprot
Match: A0A6H5JS69_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS69_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 2.090e-18
Identity = 44/79 (55.70%), Postives = 56/79 (70.89%), Query Frame = 1 
Query:   70 AAADKERNLQFLETITQNTHTILS-GSVGDGVSAAACCRMIEYAKGFDHVLGVEDADVILPAYEGPLKRHVFVDPTAKA 303
            A AD + NL+FLE + ++   +LS GSV DGV+  AC  MIEYA+ F HVLG +D DVILP YEG L+R + VD TA+A
Sbjct:    8 ALADDQANLRFLERVRESIDVVLSSGSVEDGVALGACSEMIEYARSFKHVLGSQDTDVILPGYEGLLRRPMLVDATAQA 86
[Close]
BLAST of mRNA_P-littoralis_Contig743.21.1 vs. uniprot
Match: A0A6H5JIG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIG7_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.910e-12
Identity = 38/79 (48.10%), Postives = 54/79 (68.35%), Query Frame = 1 
Query:   67 LAAADKERNLQFLETITQNTHTILS-GSVGDGVSAAACCRMIEYAKGFDHVLGVEDADVILPAYEGPLKRHVFVDPTAK 300
            +A AD++ N++FLE + ++   +LS GS+ DGV   AC  +I++AK F  VL  ED DVILP YEG L+R + VD TA+
Sbjct:    1 MAFADQQANVRFLERMRESIDGVLSDGSMADGVELEACLGIIQHAKSFKDVLCSEDTDVILPGYEGLLRRPMRVDRTAE 79
[Close]
BLAST of mRNA_P-littoralis_Contig743.21.1 vs. uniprot
Match: A0A6H5KB14_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB14_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 6.600e-11
Identity = 38/88 (43.18%), Postives = 55/88 (62.50%), Query Frame = 1 
Query:   43 GVSWGRTYLAAADKERNLQFLETITQNTHTILS-GSVGDGVSAAACCRMIEYAKGFDHVLGVEDADVILPAYEGPLKRHVFVDPTAKA 303
            G+SW +   A AD + NL FLE++ +    +LS G++ DG++  AC  ++E+A  F   LG  D  VILP YEG L+R + VD TA+A
Sbjct:   16 GMSW-KDNNAFADDQANLLFLESMRERIDAMLSSGTMEDGLALGACSDVVEHALSFKLDLGSGDTVVILPGYEGLLRRPMCVDVTAQA 102
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig743.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JS69_9PHAE2.090e-1855.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIG7_9PHAE1.910e-1248.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB14_9PHAE6.600e-1143.18Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig743contigP-littoralis_Contig743:38607..39157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size303
Hectar predicted targeting categoryother localisation
Exons2
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791538.7918925-CDS-P-littoralis_Contig743:38606..386601680791538.7918925-CDS-P-littoralis_Contig743:38606..38660Pylaiella littoralis U1_48CDSP-littoralis_Contig743 38607..38660 -
1680791538.8026166-CDS-P-littoralis_Contig743:38908..391331680791538.8026166-CDS-P-littoralis_Contig743:38908..39133Pylaiella littoralis U1_48CDSP-littoralis_Contig743 38909..39133 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791538.8132932-UTR-P-littoralis_Contig743:39133..391571680791538.8132932-UTR-P-littoralis_Contig743:39133..39157Pylaiella littoralis U1_48UTRP-littoralis_Contig743 39134..39157 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig743.21.1prot_P-littoralis_Contig743.21.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig743 38607..39133 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig743.21.1

>prot_P-littoralis_Contig743.21.1 ID=prot_P-littoralis_Contig743.21.1|Name=mRNA_P-littoralis_Contig743.21.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=93bp
MSVSRGGVSWGRTYLAAADKERNLQFLETITQNTHTILSGSVGDGVSAAA
CCRMIEYAKGFDHVLGVEDADVILPAYEGPLKRHVFVDPTAKA
back to top

mRNA from alignment at P-littoralis_Contig743:38607..39157-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig743.21.1 ID=mRNA_P-littoralis_Contig743.21.1|Name=mRNA_P-littoralis_Contig743.21.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=551bp|location=Sequence derived from alignment at P-littoralis_Contig743:38607..39157- (Pylaiella littoralis U1_48)
ACAGCTGAAGTCATTGGAAAGGGCATGTCGGTTTCGCGAGGGGGGGTATC
TTGGGGGAGGACGTATTTAGCTGCCGCTGATAAAGAGCGCAATCTCCAGT
TCTTGGAGACGATAACTCAAAATACCCACACCATCCTGAGCGGCAGCGTC
GGGGATGGTGTGTCGGCCGCTGCGTGTTGCAGGATGATCGAGTACGCCAA
AGGGTTTGACCACGTGTTGGGTGTTGAAGACGCCGACGTCATCCTACCGG
TAAGGGCACAAAACAGGTCCGGTTAGGGTAAGGGTGCTGTTGTCGTTGAA
TTTCGGCGACGGCATGTTGGGAAGTCGTCAGTTTATATGTGCTCGGCGCT
AAGTCGGGGTAAATAAGTCGCGCAAATTACAGCAGTAAATGCTTGCGGAA
ATAAACTCACTAGGTCACGGGTTCAAAGCAGAAAGAGAACTCCCCTCACG
GGAATGTTATTCATCGCTAGCCAACCCTTCCCGGTTGTTGTTACCAGGCC
TACGAGGGTCCTTTGAAGCGGCATGTGTTCGTGGATCCCACGGCAAAGGC
C
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig743:38607..39157-

>mRNA_P-littoralis_Contig743.21.1 ID=mRNA_P-littoralis_Contig743.21.1|Name=mRNA_P-littoralis_Contig743.21.1|organism=Pylaiella littoralis U1_48|type=CDS|length=279bp|location=Sequence derived from alignment at P-littoralis_Contig743:38607..39157- (Pylaiella littoralis U1_48)
ATGTCGGTTTCGCGAGGGGGGGTATCTTGGGGGAGGACGTATTTAGCTGC
CGCTGATAAAGAGCGCAATCTCCAGTTCTTGGAGACGATAACTCAAAATA
CCCACACCATCCTGAGCGGCAGCGTCGGGGATGGTGTGTCGGCCGCTGCG
TGTTGCAGGATGATCGAGTACGCCAAAGGGTTTGACCACGTGTTGGGTGT
TGAAGACGCCGACGTCATCCTACCGGCCTACGAGGGTCCTTTGAAGCGGC
ATGTGTTCGTGGATCCCACGGCAAAGGCC
back to top