mRNA_P-littoralis_Contig743.20.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig743.20.1
Unique NamemRNA_P-littoralis_Contig743.20.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig743.20.1 vs. uniprot
Match: A0A6H5JCT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCT7_9PHAE)

HSP 1 Score: 206 bits (523), Expect = 6.530e-55
Identity = 114/212 (53.77%), Postives = 148/212 (69.81%), Query Frame = 1 
Query: 1207 MAQVASIVANMNEAVERANLKTRQPEEEVACLTKPRNAQEPDDNA---TMRSAAWLLRRAIDGYSKESNKVVFDQANGRSPWTCVDPIVEWTTNVPELLVTFLDAFGHRYSDKKGAVE--EELERSRASRKCLIAGVLTSFAFDSWYKNANTMGLFLKGQGIQRDGLDFLATNFKITQPDAHVYGLRSKLAGILGTESQMMKLIPVTNALVA 1827
            MAQV SIVANM+EAVE A  + ++ E+EVA L K     + +DNA   T+ SAA LL RA   Y++E N++VF Q  G +P +  DPIVEW ++VP LL TFL+  G R    K A E  EE+E + ASRKCLIA ++TSFAFD+WYKNAN M +FLK +GIQRD LDFLA  FKI Q D++VY ++ KLA  LGT+ +M+K +P++  LVA
Sbjct:    1 MAQVGSIVANMHEAVETAKSRAQRLEDEVAQLKKEIKQSQENDNAEVYTVHSAAMLLGRATADYAQEGNRLVFAQKAGSAPLSLTDPIVEWKSDVPRLLATFLNELGPR---SKAAEEGNEEIENAVASRKCLIAAIVTSFAFDTWYKNANAMTIFLKSRGIQRDWLDFLARTFKIAQTDSYVYKVQKKLADSLGTKEEMLKRVPLSEGLVA 209
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BLAST of mRNA_P-littoralis_Contig743.20.1 vs. uniprot
Match: A0A6H5KRV8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRV8_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 1.970e-50
Identity = 104/209 (49.76%), Postives = 146/209 (69.86%), Query Frame = 1 
Query: 1207 MAQVASIVANMNEAVERANLKTRQPEEEVACLTKPRNAQEPDDNATMRSAAWLLRRAIDGYSKESNKVVFDQANGRSPWTCVDPIVEWTTNVPELLVTFLDAFGHRYS--DKKGAVEEELERSRASRKCLIAGVLTSFAFDSWYKNANTMGLFLKGQGIQRDGLDFLATNFKITQPDAHVYGLRSKLAGILGTESQMMKLIPVTNALVA 1827
            MAQ+ S+V N++  +E A  + R+ + ++A       + +P D  T+          I  YS ES   VF+Q +GR+P   +DP+VEW T +P L+V FL+  G++++  D +G V+EEL RSRASRKCL+AGVLTSFAF++W KNAN MG FLKGQG+QRDGL+FLA+ FKITQ D H++ +R+KLA +LGTE++M KLIP+ + LVA
Sbjct:    1 MAQIGSLVGNLHADIETARAEVRRLKRDLAHERGSNASNKPADIDTV---------GIATYSSESQDAVFNQKHGRAPLAAIDPLVEWRTYIPPLMVAFLNELGYQHAEVDVEGDVKEELWRSRASRKCLMAGVLTSFAFNTWNKNANAMGFFLKGQGLQRDGLEFLASIFKITQSDRHLWEMRTKLADVLGTEAEMRKLIPLPSVLVA 200
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BLAST of mRNA_P-littoralis_Contig743.20.1 vs. uniprot
Match: A0A6H5L2D3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2D3_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 8.240e-47
Identity = 92/155 (59.35%), Postives = 121/155 (78.06%), Query Frame = 1 
Query: 1363 LLRRAIDGYSKESNKVVFDQANGRSPWTCVDPIVEWTTNVPELLVTFLDAFGHRYSDKKGAVEEELERSRASRKCLIAGVLTSFAFDSWYKNANTMGLFLKGQGIQRDGLDFLATNFKITQPDAHVYGLRSKLAGILGTESQMMKLIPVTNALVA 1827
            LLR+A + + +ES+K+VF QANGR+P T  +P+VEW  NVP  L  FLDA    Y  ++ A +++L R+R +RKCL+AGVLTSFA ++WYKNAN  GLFLK Q IQRDGLDFLA+NFKI+Q D H++ LR++LA ILGTES+M KL+P+T AL+A
Sbjct:    2 LLRKATEKFGEESSKLVFAQANGRAPLTFAEPVVEWKDNVPPELGAFLDALA--YPVEEDANDDDLVRARVARKCLLAGVLTSFAHETWYKNANISGLFLKDQWIQRDGLDFLASNFKISQTDNHLWKLRTRLADILGTESEMKKLVPLTAALMA 154
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BLAST of mRNA_P-littoralis_Contig743.20.1 vs. uniprot
Match: A0A6H5KQE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQE5_9PHAE)

HSP 1 Score: 187 bits (476), Expect = 1.220e-46
Identity = 93/155 (60.00%), Postives = 119/155 (76.77%), Query Frame = 1 
Query: 1363 LLRRAIDGYSKESNKVVFDQANGRSPWTCVDPIVEWTTNVPELLVTFLDAFGHRYSDKKGAVEEELERSRASRKCLIAGVLTSFAFDSWYKNANTMGLFLKGQGIQRDGLDFLATNFKITQPDAHVYGLRSKLAGILGTESQMMKLIPVTNALVA 1827
            +LR+A D Y++ESN +VFDQANGR+P T  DP+VEW   VP +LV FLD     Y   + A  + +  +RASR+CL+AGVLTSFA D+WYKNAN +GLFLK QG+QRDGLDFLA + KITQ D H++ LR++LA ILGTE++M KL+P+T ALVA
Sbjct:    2 ILRKATDEYARESNVIVFDQANGRAPLTFSDPVVEWKDKVPPVLVAFLDELA--YPSMEDANGDGVATARASRQCLLAGVLTSFAHDTWYKNANILGLFLKDQGMQRDGLDFLANSLKITQTDNHLWKLRTRLADILGTETEMKKLVPLTAALVA 154
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BLAST of mRNA_P-littoralis_Contig743.20.1 vs. uniprot
Match: A0A6H5L8B8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8B8_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 2.550e-40
Identity = 78/184 (42.39%), Postives = 117/184 (63.59%), Query Frame = 1 
Query:  982 LADLREILGKMINAADPDGKRMEILSSEDSVIKLSRWVNKQLDIISNGVPIGRSHAHVITDGRSAPVVLYPYIHCMAQVASIVANMNEAVERANLKTRQPEEEVACLTKPRNAQEPDDNATMRSAAWLLRRAIDGYSKESNKVVFDQANGRSPWTCVDPIVEWTTNVPELLVTFLDAFGHRYSD 1533
            ++DL  I   MI A+DPDG +M++   E   + +SRWV ++L+ IS   PIGRS A  I D R+ PV++YPYIH MAQ+ S+V N++  +E A  + R+ + ++A       + +P D  T+R AA  LR  I  YS ES  VVF+Q +GR+P   +DP+VEW T VP L+V FL+  G+++++
Sbjct:    1 MSDLGGIFKDMITASDPDGTKMQLSVGEGEGVTISRWVEQELNNISEITPIGRSTATFIEDNRTNPVLVYPYIHSMAQIGSLVGNLHADIETARAEVRRLKRDLAHERGSNASNKPADIDTVRLAAGKLREGITNYSSESQDVVFNQKHGRAPLAAIDPLVEWRTYVPPLMVDFLNELGYQHAE 184
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig743.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JCT7_9PHAE6.530e-5553.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRV8_9PHAE1.970e-5049.76Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L2D3_9PHAE8.240e-4759.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQE5_9PHAE1.220e-4660.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L8B8_9PHAE2.550e-4042.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig743contigP-littoralis_Contig743:35014..37226 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1829
Hectar predicted targeting categoryother localisation
Exons2
Cds size1827
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791538.7458751-CDS-P-littoralis_Contig743:35013..360991680791538.7458751-CDS-P-littoralis_Contig743:35013..36099Pylaiella littoralis U1_48CDSP-littoralis_Contig743 35014..36099 -
1680791538.7565596-CDS-P-littoralis_Contig743:36485..372261680791538.7565596-CDS-P-littoralis_Contig743:36485..37226Pylaiella littoralis U1_48CDSP-littoralis_Contig743 36486..37226 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig743.20.1prot_P-littoralis_Contig743.20.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig743 35014..37226 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig743.20.1

>prot_P-littoralis_Contig743.20.1 ID=prot_P-littoralis_Contig743.20.1|Name=mRNA_P-littoralis_Contig743.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=609bp
MFKVEEEVAALQRVEEAPARAFLLEAKRAVVAAQKVAADAVVAEAAAIET
AAAGEAVMEVANMQEERGRAPAGVVVARLLLLLTVADSAANLLLLLPLAV
GMMIWMPRLLGFAAATKPQAVEKQRGVKAAIGLAAKLCVLLSATAGSVAR
FLSLPVAGLRLSRVATAPPCAKHEGSDKSGSSRLKPGRRKARRRKMVRRR
RKLARRLRLRRRQKLRGRAKLRRRPKPRRGWRKRRRGGIARRDVDDAVRV
DWVPTLPTQPTAAAAWENRNRRRRGARGGPMLRRGRRMAWCVFGTVWSNE
GAVFESRRRRAARRVLSEFLAANNPVTLADLREILGKMINAADPDGKRME
ILSSEDSVIKLSRWVNKQLDIISNGVPIGRSHAHVITDGRSAPVVLYPYI
HCMAQVASIVANMNEAVERANLKTRQPEEEVACLTKPRNAQEPDDNATMR
SAAWLLRRAIDGYSKESNKVVFDQANGRSPWTCVDPIVEWTTNVPELLVT
FLDAFGHRYSDKKGAVEEELERSRASRKCLIAGVLTSFAFDSWYKNANTM
GLFLKGQGIQRDGLDFLATNFKITQPDAHVYGLRSKLAGILGTESQMMKL
IPVTNALVA
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mRNA from alignment at P-littoralis_Contig743:35014..37226-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig743.20.1 ID=mRNA_P-littoralis_Contig743.20.1|Name=mRNA_P-littoralis_Contig743.20.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2213bp|location=Sequence derived from alignment at P-littoralis_Contig743:35014..37226- (Pylaiella littoralis U1_48)
ATGTTCAAGGTTGAAGAAGAAGTAGCTGCTTTGCAGAGAGTTGAGGAAGC
ACCAGCTCGGGCATTTCTGTTGGAGGCGAAACGGGCAGTTGTGGCGGCGC
AGAAGGTTGCGGCTGACGCAGTCGTTGCCGAGGCGGCAGCTATCGAGACA
GCGGCGGCGGGGGAGGCGGTGATGGAGGTGGCGAATATGCAGGAGGAGCG
AGGTCGGGCACCTGCAGGGGTGGTGGTGGCGAGGTTGTTGCTGTTGTTGA
CAGTGGCGGATTCGGCGGCCAACTTGTTGTTGCTGTTGCCTTTGGCGGTG
GGAATGATGATCTGGATGCCGCGACTATTGGGGTTCGCTGCAGCGACGAA
GCCGCAAGCTGTTGAGAAGCAGCGAGGTGTCAAGGCAGCAATAGGCTTGG
CGGCGAAGTTGTGCGTACTGTTGTCGGCAACGGCGGGCTCAGTGGCAAGG
TTCTTGTCGTTGCCGGTGGCAGGGTTACGTCTGTCGCGGGTAGCGACGGC
GCCACCTTGTGCGAAGCACGAGGGCTCGGACAAGTCTGGGAGCTCCAGGC
TAAAGCCGGGGCGCAGGAAGGCGCGACGGAGAAAAATGGTGCGGCGTAGG
CGGAAGCTAGCTCGGAGGCTAAGGCTGCGGCGGAGACAGAAGCTGCGAGG
TAGGGCGAAGCTACGGCGTAGGCCAAAGCCCAGGCGGGGGTGGAGGAAGC
GGCGAAGGGGAGGTATCGCGAGACGGGATGTGGATGACGCGGTGGGTATT
GTTTGGAAGTTCAGGTGTCGAGCTTGGTGCGGGGAGATGTCATTGTTGCT
TGTTGTCAGCGTTTATCTCTTGTGTCCTTGCGTCTCCCTCTCTTCTCTCT
TCTGGGTGGTGTCCCTGTTGTTGAAGGCGGTATCGTGCTTGTTGTTCTCT
TTTTTTCACTGGCGACCAGGTCGGGCAGAGGGTTTGATATTTTCTACGTT
TGTTTCCCATTTTTTCGCGTTTTGTTTCGTGAGAGTATCACCACCTTGCG
TTGGAACAGTATCTGCACCCAATCAACCCCAGGAGCTCGCGGGTGCCAGC
GTAGTTGTCCCGCATGCTGAAAACGCGTCCTGGTTCCATTCGGTTGTTGC
TCTAACCATACCCGCCCTACCTGATAGGTTCGCGTTGATTGGGTGCCCAC
ACTACCTACGCAACCCACCGCTGCAGCCGCGTGGGAGAATCGCAATCGGC
GGAGGCGTGGAGCGCGGGGGGGCCCAATGCTGCGGCGCGGAAGGCGGATG
GCATGGTGCGTGTTCGGAACTGTTTGGAGTAATGAAGGTGCCGTGTTTGA
AAGTCGGCGGAGGCGTGCAGCGCGGAGGGTGCTTTCGGAGTTTTTGGCCG
CCAACAATCCCGTTACGTTGGCCGACCTGCGGGAAATACTCGGGAAGATG
ATCAACGCCGCCGACCCCGACGGGAAGAGGATGGAAATATTGTCAAGCGA
GGATTCGGTGATCAAGTTAAGCCGCTGGGTCAATAAGCAGTTGGACATAA
TTTCCAACGGCGTTCCGATCGGCAGAAGCCATGCACACGTAATTACCGAC
GGCAGATCAGCTCCGGTTGTGCTTTACCCATATATTCATTGCATGGCTCA
AGTAGCTTCGATCGTCGCCAATATGAACGAGGCTGTAGAGAGGGCCAATC
TCAAGACGCGGCAGCCGGAGGAGGAGGTAGCGTGTCTTACGAAGCCTAGA
AACGCACAGGAGCCCGACGACAACGCAACCATGCGGTCTGCGGCATGGCT
ACTTCGGAGGGCCATCGATGGGTATTCCAAAGAAAGCAACAAGGTAGTGT
TTGACCAGGCGAACGGCCGATCGCCGTGGACTTGTGTCGATCCAATCGTC
GAGTGGACAACTAACGTCCCGGAGCTACTTGTCACCTTCCTTGACGCGTT
CGGTCATCGGTACAGCGACAAAAAGGGTGCTGTCGAGGAGGAACTCGAAC
GTTCGCGAGCCAGTCGTAAATGCCTGATAGCTGGAGTATTGACATCGTTT
GCGTTTGACTCATGGTACAAGAATGCCAATACCATGGGCCTTTTCCTGAA
GGGACAGGGGATTCAAAGAGATGGATTGGATTTCTTGGCAACCAACTTCA
AGATCACGCAACCTGACGCTCATGTGTACGGGTTGAGGTCAAAGCTGGCG
GGTATTCTCGGCACCGAAAGCCAGATGATGAAACTAATCCCCGTTACAAA
CGCGCTTGTCGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig743:35014..37226-

>mRNA_P-littoralis_Contig743.20.1 ID=mRNA_P-littoralis_Contig743.20.1|Name=mRNA_P-littoralis_Contig743.20.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1827bp|location=Sequence derived from alignment at P-littoralis_Contig743:35014..37226- (Pylaiella littoralis U1_48)
ATGTTCAAGGTTGAAGAAGAAGTAGCTGCTTTGCAGAGAGTTGAGGAAGC
ACCAGCTCGGGCATTTCTGTTGGAGGCGAAACGGGCAGTTGTGGCGGCGC
AGAAGGTTGCGGCTGACGCAGTCGTTGCCGAGGCGGCAGCTATCGAGACA
GCGGCGGCGGGGGAGGCGGTGATGGAGGTGGCGAATATGCAGGAGGAGCG
AGGTCGGGCACCTGCAGGGGTGGTGGTGGCGAGGTTGTTGCTGTTGTTGA
CAGTGGCGGATTCGGCGGCCAACTTGTTGTTGCTGTTGCCTTTGGCGGTG
GGAATGATGATCTGGATGCCGCGACTATTGGGGTTCGCTGCAGCGACGAA
GCCGCAAGCTGTTGAGAAGCAGCGAGGTGTCAAGGCAGCAATAGGCTTGG
CGGCGAAGTTGTGCGTACTGTTGTCGGCAACGGCGGGCTCAGTGGCAAGG
TTCTTGTCGTTGCCGGTGGCAGGGTTACGTCTGTCGCGGGTAGCGACGGC
GCCACCTTGTGCGAAGCACGAGGGCTCGGACAAGTCTGGGAGCTCCAGGC
TAAAGCCGGGGCGCAGGAAGGCGCGACGGAGAAAAATGGTGCGGCGTAGG
CGGAAGCTAGCTCGGAGGCTAAGGCTGCGGCGGAGACAGAAGCTGCGAGG
TAGGGCGAAGCTACGGCGTAGGCCAAAGCCCAGGCGGGGGTGGAGGAAGC
GGCGAAGGGGAGGTATCGCGAGACGGGATGTGGATGACGCGGTTCGCGTT
GATTGGGTGCCCACACTACCTACGCAACCCACCGCTGCAGCCGCGTGGGA
GAATCGCAATCGGCGGAGGCGTGGAGCGCGGGGGGGCCCAATGCTGCGGC
GCGGAAGGCGGATGGCATGGTGCGTGTTCGGAACTGTTTGGAGTAATGAA
GGTGCCGTGTTTGAAAGTCGGCGGAGGCGTGCAGCGCGGAGGGTGCTTTC
GGAGTTTTTGGCCGCCAACAATCCCGTTACGTTGGCCGACCTGCGGGAAA
TACTCGGGAAGATGATCAACGCCGCCGACCCCGACGGGAAGAGGATGGAA
ATATTGTCAAGCGAGGATTCGGTGATCAAGTTAAGCCGCTGGGTCAATAA
GCAGTTGGACATAATTTCCAACGGCGTTCCGATCGGCAGAAGCCATGCAC
ACGTAATTACCGACGGCAGATCAGCTCCGGTTGTGCTTTACCCATATATT
CATTGCATGGCTCAAGTAGCTTCGATCGTCGCCAATATGAACGAGGCTGT
AGAGAGGGCCAATCTCAAGACGCGGCAGCCGGAGGAGGAGGTAGCGTGTC
TTACGAAGCCTAGAAACGCACAGGAGCCCGACGACAACGCAACCATGCGG
TCTGCGGCATGGCTACTTCGGAGGGCCATCGATGGGTATTCCAAAGAAAG
CAACAAGGTAGTGTTTGACCAGGCGAACGGCCGATCGCCGTGGACTTGTG
TCGATCCAATCGTCGAGTGGACAACTAACGTCCCGGAGCTACTTGTCACC
TTCCTTGACGCGTTCGGTCATCGGTACAGCGACAAAAAGGGTGCTGTCGA
GGAGGAACTCGAACGTTCGCGAGCCAGTCGTAAATGCCTGATAGCTGGAG
TATTGACATCGTTTGCGTTTGACTCATGGTACAAGAATGCCAATACCATG
GGCCTTTTCCTGAAGGGACAGGGGATTCAAAGAGATGGATTGGATTTCTT
GGCAACCAACTTCAAGATCACGCAACCTGACGCTCATGTGTACGGGTTGA
GGTCAAAGCTGGCGGGTATTCTCGGCACCGAAAGCCAGATGATGAAACTA
ATCCCCGTTACAAACGCGCTTGTCGCC
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