mRNA_P-littoralis_Contig119.87.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig119.87.1
Unique Name	mRNA_P-littoralis_Contig119.87.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig119.87.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig119.87.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig119	contig	P-littoralis_Contig119:462509..470352 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Model size	634
Hectar predicted targeting category	other localisation
Exons	2
Cds size	387

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789498.380234-UTR-P-littoralis_Contig119:462508..462650	1680789498.380234-UTR-P-littoralis_Contig119:462508..462650	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig119 462509..462650 -
1680789498.4113035-UTR-P-littoralis_Contig119:470247..470352	1680789498.4113035-UTR-P-littoralis_Contig119:470247..470352	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig119 470248..470352 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789498.3942204-CDS-P-littoralis_Contig119:462650..462971	1680789498.3942204-CDS-P-littoralis_Contig119:462650..462971	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig119 462651..462971 -
1680789498.4029326-CDS-P-littoralis_Contig119:470181..470247	1680789498.4029326-CDS-P-littoralis_Contig119:470181..470247	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig119 470182..470247 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig119.87.1	prot_P-littoralis_Contig119.87.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig119 462651..470247 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig119:462509..470352-
coding sequence from alignment at P-littoralis_Contig119:462509..470352-

protein sequence of mRNA_P-littoralis_Contig119.87.1

>prot_P-littoralis_Contig119.87.1 ID=prot_P-littoralis_Contig119.87.1|Name=mRNA_P-littoralis_Contig119.87.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=129bp
MVQQLPCMFVTWVGYLPPVKPWAAATSWGGVRLLVTSSRRCPQLNRGGTE
FPELATLSATTSWCMVFWVDFIRIKFTAPNLFARNKQALRTEPWRAPQSR
ALRGLDCRLRSRRDATREKSSICCDRNT*

mRNA from alignment at P-littoralis_Contig119:462509..470352-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig119.87.1 ID=mRNA_P-littoralis_Contig119.87.1|Name=mRNA_P-littoralis_Contig119.87.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=7844bp|location=Sequence derived from alignment at P-littoralis_Contig119:462509..470352- (Pylaiella littoralis U1_48)
CCAAGACAAACCTCAACCATAAAACTACAGCATACTTCAAAGTACTTCGT
GCATCAAACCAGGGCCCAGGGCCATGACAGACCAAGGCAAAGGCAAACCA
GGGCGATGGTCCAGCAACTACCATGTATGTTTGTGACATGGGTGGGGTAT
CTTCCACCCGTCAAACCGTGGGTAGGTCCTTCATGCTCCACTCAGTAGTC
ATGGTTTGAATTCCGCCTATCTATGATGCGTATGTGGAATTAGTCTAATT
CCTGTGCCGTTTGAATCTTCCCCAAGGTGCCTTCAGTCAAGGAGTAGCCG
CGCTACAAGTTGGGGGTCATCCCCTTGTGGCCGTTTTCACGTGACGATGG
CGCTCGCTCTCGGATCTGTCTGTGGGTGGTGATGAAAAGTCTGCGCTTAA
CACCTAGACCAATATCGTAGCTGTTGTGATCACCAACATTCCAAGCAGGG
TGTAAGAACCCAGGGTGTCGCGGCGCAAAAAAAAGATGTTTTTGACTAAC
CAGGTGGTGAGATAACTACCAGGTAAGTACTTTAGGACGAGGAAGTCATA
CTTTGTGTGGCGACTGACATCTCGAGTTTCAAAGTTTTTTAACACCCAAC
GTCTCCGCTACCCTGAGGGCGGGTATGAGCCTATCGAGGTGGGGCTCGCA
GGTGCCGCGCTGAGATTCAACCTCACGCGTGAGCGGGACCAATTTAGTAG
TGCACGCAAATCCTCTTCACCGACATTTCATCACCAGTTTCTGAATCTCT
CTACATCTCTTTTGTTTTCGTGCGAGGTATCATATTCGTTGTATGAAACT
GGTTGGTGTAATTTGTCTGTAGAGGACATAACAAGCAGTCTCCAGACACA
GGACATACATACATGACTACTGCTGTGTCATGTTTCACGTGTTGTCATGA
AAAGGTTCATATTGCTCCTTCCTCACCAGACCTACTAACGCCACAGGCAC
GGTAAACCGAACACCGCCTTGTTGCCGTTTTTCTCACGTTGATGCCGAAA
CTCATGTCTGCGCGCTCGCGCTCGTCTACTCCTGAACCCCGGTTGCGAGG
TCATCCCATGTAGACTACGTCATGTACCTTGAAAGTAGTTCTCCGCGCAA
AACCTCAAGCATTCTTTGAGAACCTCCGACACTGAGAGTGCGAAACCCTG
AGGGCAGCCGAGTACGGAGCCCTTGTATCACTATGCAATGTTTCATATCA
TACATCATATGTAGCTTTGAATATATCATGCTACGAAGTATACATTGTTT
CGTATCATACAACATAGCTTTGTACGGAGTATATATCATGATCTACGAAG
CATACAATGTTTCGTATCAAACAACATAGCTTTGTATATCATGATCATAG
TAGTATCGAACATTTGTTTTATCGATGTGTACCTTGCGGGACAAAAAAAC
AACGAAGAAAACCTCAACCACTTGGTCTATACAAACAAACCTATCAGATC
GTTGTCCGTCTACCCAAGACAGAAGAGAGAGGGAGGGAGAAAGATAGGGA
AAAGCAAAGAAGTTCAAGAGGGTCGATCAACCATCCTCCACCACCACCAC
CACCACAACCACCTGCCCCCCTCTGCCCGTTAGCACCACAAAAAAAAACG
AGAACTTGAGTCAAAATGACCGGAAAAGAACCACGCGCAAGACGGTCGGA
AAACTACAACGAAAACGAACAGCCACTTTTCCAAAAAAAAGGGTCATCGT
GGACAAACAGCACGAAACTAACCTCACACGAAGAAGGCGGGTGACCCAAC
GACACCAATGTCAGTCACACAGGACGGATTCGAGTTGAGTGATGGTTGTC
CGTGGCTCATCTGATGTCACCCCGCCTACCCCGGTTGGCCGAAAGCATCC
CAACTGCACTTTGCTCATCGCCTATCAAATTGAAAAAGAGCTGTCCTGTC
GAACTACAACTACCAGGATACAACCATGCAGCACCTTAAGAGTGAAAAAA
AAAAAGAGACGGCAGCAACGCAGTGGCCGACCGCGGAATACGGTCGGTCG
TTGGTCACCCGCACGCGCCGAGAGGTCGGCACGATATCTTTTGAGGGTTC
CGACAACAAACACTAAAAAATTACTTCGTGCCTCCGTCTCGCAAAACCCG
TAGGGCTGGACGCTCTCTGAAACATCAGTGCTGAACCCCCAACTAAAGAA
CTCGCCTATCAAACGTATACATGTAAAACGCCGAATTGTCTATACCTTGG
CCGAGAGAGAGCTGAACGCCCCTCTGTACTACGATCAGTGCTCCACCAAA
AAAAGCAGTCCACGTCTGCCTGCCAAAGAGCTCACCGTCCCCTTGGATGA
CTGCAGGCGCTGAGCCTAACGAAGAGGCGCATCGAAAGCTAGCCGAGCAT
ATTATATATCCCTTGCCTTGAGAACCAAACACCCTCTGTATTTCTACCAA
GGCTCCACCAGAGAAAGATAAGAGTCAGTGAGTGACCCCTGCATCTCCCT
GCCAAAGGCCTCCACGCGCTCTACGCCGCCCGAGCTAACTGCAAACGAAA
GACGAGAGGAGCGGGCCCAAAGAGTCGCGTGCTCAACACCGCATGAAGGC
GGCAACAGAACAGAAAACAAAAATCGATGCCGAAGACGCATCATCGCCAA
AATTGGATGCGAAAAGTGTGGACGAAGGGCCTGGGGAAACCTAAAGACAC
AAACGCAAGAATGCCACAACAAAATAAAAGTAAATCCACGCCGCGTAAAA
TCCAGTAATCCAGTACAGAATGTTGGGACTGCGTTTGTTGCGGGCTTCAA
AGGTCGCCACTGCACGGAAAAAAAGGTTCATTCACGACAGCAGTATCGTA
CACTACCAAAACATCGCGATCGTGGGTGAGCGAGCGCGGGCGGGAGCAAA
AACCTGTGTTTCCACAAAAGATAAAAACTAGAGAAAACTCACACACACGT
ACGCACACGTATGTACCAACAGCAACAGACATGATCGCAGCCCAACCTAG
TAGAATCAGTAGCCAAACATCGAAATACTAAAACAACAAACGTCCAACAA
ACACATACACGAGGCGAGAAAAGAAAAAAATCACCAAAGACAACTAAGTT
GAGCACAGCATAGCACATCACAGCACGGCAAACATGCGATCTCAGCAGAC
ATTCGCCACGAAGTCTGCACCCCTCCCCTCCCTTCCCTTCCCCGCCCCCT
TCCCCGCCCCCTCACCCCAACGGCACAAAAATCAAACAAAAAAAATAAAC
GCCAGTCAATAACGCCGGCGGAGCAACACAGACGGCCATGTAACCCCTCC
CCTGCTTGCTGCCTTGGTTTCCTTCTCGCGGCGTTACCAACTCTACCCAG
CACTCGTCACCCGCCCTCGCACCCCCAACCACCTTGCGCTCATCGCCTCG
CGTCAAAATTCCATCTACACAACTCCGCTCTACACCTACCACTACCTGTA
CCATGTACGCTTTTAGCTATTTCATCTCCGTCGTCAGAAACGACAAACAA
GTAATAAAAATGACAGTGAGGGGGCGCAGGTCGTATTCGAACTCATTAAG
GCCAAAGCTTCGTTGGGGGGGGGGGGGGGGGGGGGGGGGGTACCGTAACT
TGTTTTTAACCCCTACATATCACCCGGCTGTGCTAGCAGCCGCGGGGGCG
GGGGGCGGGGGCGGCGGCAGCCACATTCGTCCGTACCCTAGATGCTATAA
AACAAAACTTCTCCACGTTTTCAGAACACATCATTTCCCCCCATCTACAC
GAAAGAAACCGAACGAGTATCATATCAAATGATACGAATATCACATCATA
TGTGAAACGTGGATCTACAACTGGTTCCGAAGCGTTTGCGGAATACTCCC
ACTTGTACTGTTCGATTTTTTGGGTGTTGGGGGAGTTGTGACCGAAGACT
GAAAAAACGATTGGAGAGCAAGAACCCAGCCCTCACACAGAAGGTCGATC
GCACCAGCATGAGAAAGCCCTGGCTACGAAAAAAAAAAAACTCGCTTAAA
AACGTACTGGTCGATCTCACACGCGCATAGAGTGGCGGTTGGTTGCCTCT
ATTTCAGACTTTAATCAACCAAATCAGCCAAGTAATTCCCCACAGAGACA
ACAACTCTGCCTAATCTGATCATATCCGAGTCTCTTTCTCGTTGTCTAAC
ATCACACTGCTGCATCATTTTCAACGCAACGCATGGTTCTCGCATCACTG
ACGACAAAGTCGCCACCCCCGTTTCTCGCCCCCGGCAAAAAATAAAGAGA
CCAACAAAAAAAAACAACGAAATAAAAACATGAAACAAAAAAAAACAAAA
AAAATCAGGAGCAAATTCAAACAAATAAACAAACGACCAAACAAACAGAC
AACCAAACAACCAAACAAACCAACCAACCAAACGAACACACAAAACACAC
AAAACAAACGACCAGACAAGAAAAATCGAGGGGAGGCTCGTACAACAAAA
GCCACGCCACACCACGCTATGCCACGCTACGCCACGCTAAGACAAGCCAA
GCCACGGTACACATCGAAGTACACGTTCAGCAAAACGTGTTTTACGTCGC
ACTCAGGCGTTTGTTATGTACACTCGGGCGTCAATCCAGACCCGGACGTG
AAGCACGAGTCTTCCACGTACGCGGTTGCCTCGGCGGGGTCTCCGGTGTT
TCCGGATAGGCGTGTGTTGGTAGACCGAATGAAGCTGGAGACAAAAAACA
AAATGTGTATGATGGGGGGGGGAGTTTGAGTGAGGTACGGATTGCTAACA
TACCTTCATGTTCAAACACACGGCGCGACGCGAAATAAACAAAAGAAATG
AACAGCAGCTAATAATCATATTATATGATAACTTTGGCGATTTCTCGTAG
GGCCGGATTTTTTATTCATTTTTTTGATAGATTCCGATTTTTTTTTGAAA
TCAGGCTTCTTATACGCTCGGAAATCACCTTTTTCCGAACAACATTTTCC
GAACAGCTTTTAATCGAATTTCAGCAGGAAAATCGGACATTTTCCGAACG
CTGGATCAGTTTGGAAAACACGATCGGAAAACATATTAAAAAAAAAATGT
GTGAAGTTATCTCTCTTTGTGTGTGGACAAAACAAACGATGTTAATCACA
ACAGAGCATCAGAGGAGGAGAGCTGCTGCTACTACTTTCTGTGTTGTTGC
AGCTTCTGCTCCTGCTGCTGCTACACCTGCTTGCTGCTGTCCGTACATGT
GTCCACCATCTTTCTGTGTACGCTTGCCGTGTCATCATCCATTCCATCGT
GTTCATCAGCAACCAAAACCAACCGTATTATGTAGCAGCAGCATCATCAG
CACAGCAGCAGCAAGACGGGGAGTATCAAAGCTTCCTCTGAGTGAGACCA
CAGTTTGCATCTTCGCTCGTAACTCCCCAATGAATGAAGCCACAGCGATG
ACAAACCCATCTCCCGTGAGCTGTGCGTATGGCTCCCCTCGTATGGTAAT
CGTCTGGGTGATGATCACACTGGCATGTTCGCAAAATGGTCATCGCTCGT
GGCTGTGGCATATTGTTGTGTTGTAACAAAGAAGACGAGCTATCGTCTCC
TTTCTCTACTGCTGTACAACTTATACATACAGCAGTATAGAATAATGCTG
CTGTACAGCAGACCGGCTGACACATATTTCTCAATTTGTTGCGCATGAGT
TGGACATGAGCAAACCTACGTTGCGTAACCCTAACACAAGCGATCACGAC
ACGAGGGGGATCATATGCACAGCTCACGGCATATGCCTTCGTCATTGTTG
TGTCTCCATTCGTTCGAAAGTTGCGAGCGGCGATGCAAACGGGTTTCAGC
GCAAGAATCACCACCATGCGGTCCTTCGATGCAGATATATACTTTGGAGC
CGACTCTTCAACCACCTACTTAAAAAAAAGATCGCCGAAAATCCGAACAC
CTATTTACCTATAAGAACAGCGGATCGGCACCCGTTGGCCGGAAAAAGTT
CGTTCGGATTCTATCAAAAAATGAAAAAAAACCCGGCCCTACGAGAAACC
GCCTTACGATAAAATATCATAGATAGATTTCATATATGCTTCTCGGGGGC
GAGGGAATAACTCAAATAAAAAAAGAAAGTCGCAAAATGGGCTCTTTGAG
GATCTAGAGAAACGTGAGAATGGTATCATATCATATGTACGATAGAGAAA
AACGACGATCCAACTTCGCGTTGCAAGTACACAAACAATACATGATACAA
CACCGTAGTATTTTGATTATGCGCATTTTTTTCTCCTAGGTTAGGTCGAG
CGCGATGGTGCCGTGTGCAGGAAAAAAGCGAATAAAAATGTTCTCCGAGG
TACGAAGCATACGTCGTACATAGAACGCACACATGGGCACGGACGAGAGG
AGTTACTGTAGACCGCTTTCGTGCAAAGCGCACCGGACCGCCCGCCGAGC
GATAAAACGGAACGTCGCGTACGAAACTGTTGCACGATGAGAGGCGTGTT
TTTGTTCCTTTTCGTTGGATACAAAAAAAAACACACACACACGCACACAC
ACGAATGATACACAAATAGTTGTCCAACCTTTCATACGACGGATACGTAC
ATACCATATATGGTGCTGATTATTTTATTTTATGTTTCAAACACAAAAAA
AAATGTTTTCTTTGCCGCCAACAGGAGAGAAGTTGGTGTCTTATTTTTGT
GAGGATGTTCGTGGTGCACAAGAGAATAAAAATGTACCTGGTATAAGTCT
TGACGCCTTCTCGTCATTTCACGGCCACGCTCGGCCGTGCACGTTCGTTT
TGTCGAGGAGGCGTTTAAAACACCCACACACACCCACACACACGCACACA
CAAGAACTTCAACATGCTGCTGCGTATCAGGTCTCACGGATTTTGCACAA
ACCAAGCTTTGCTACGTGGGAGGGGGCAGAAAATTCAGAGGCGTCGTCGG
GAGGTTTTGAGAGCCTAGGCCAATCAGAGACCACCGCCTACGACCATGAT
TCATTGAAACAATGAATTATTTACTAGTAGAGGAGTCAATACAGGGTCTT
GAAGGAGTCAACAGGAAACTACTGCTAGAAATACCAGGTACCAGGTATCA
TTTTAGCCTTTGCCCTATACCAGGTATATCCTAAGGCCGTGCAGCAGTAG
ATCGGGGTTTGTGTTTTTCCCCTCCCACAGGCGTTCCAAGCCAAAAAAAC
GTTCTTGGTGTGATGATATCATACGATATCATACGATATCATATCGTCTG
GATAAAAATCCGTTGTTCGTCGGAGACAAAAACACACACGTGAAGGGCAA
CAGCGTCGCGCAAACGTACCCACCCCGCAGATATCCCGCAATTGGCGCGC
ATTATCGGGCCCCTGCTGCTGCTGCTGTTGCATCTAGATATATGAGTTCA
CAAGTTCCCGGGAGTATGATACCTCTTGAAACGTTTCTGGCTTGCCTGCC
GCTGCTTTGATACACACAACCACATCGACAGGCTGCAGCGACATCGTGGG
GTGGAGTGCGGCTGCTTGTGACGAGCTCGCGGCGCTGTCCGCAACTAAAC
CGTGGTGGTACAGAGTTTCCTGAGCTCGCGACGCTGTCCGCAACTACATC
GTGGTGCATGGTTTTCTGGGTTGATTTCATTCGCATTAAATTTACTGCAC
CTAATTTGTTTGCGAGAAATAAACAAGCGCTCAGAACCGAACCTTGGCGA
GCGCCTCAATCTCGCGCGCTTCGAGGCCTCGACTGCCGTCTGAGGAGCCG
CAGAGATGCGACCCGCGAGAAGAGTTCAATCTGCTGTGATCGTAATACTT
AGATCCCTGATACGAGTACCTTCGCTACCCTTGAGCTCTTCCGGGGAACA
GGGTGGAATGAGGGAGCGCACACAGCGGTCAAGGAAGGGCATCATATCGC
CGATAAAAAAATCTATTTTTTGTCGAAAACTTTATACATCATGC

Coding sequence (CDS) from alignment at P-littoralis_Contig119:462509..470352-

>mRNA_P-littoralis_Contig119.87.1 ID=mRNA_P-littoralis_Contig119.87.1|Name=mRNA_P-littoralis_Contig119.87.1|organism=Pylaiella littoralis U1_48|type=CDS|length=387bp|location=Sequence derived from alignment at P-littoralis_Contig119:462509..470352- (Pylaiella littoralis U1_48)
ATGGTCCAGCAACTACCATGTATGTTTGTGACATGGGTGGGGTATCTTCC
ACCCGTCAAACCGTGGGCTGCAGCGACATCGTGGGGTGGAGTGCGGCTGC
TTGTGACGAGCTCGCGGCGCTGTCCGCAACTAAACCGTGGTGGTACAGAG
TTTCCTGAGCTCGCGACGCTGTCCGCAACTACATCGTGGTGCATGGTTTT
CTGGGTTGATTTCATTCGCATTAAATTTACTGCACCTAATTTGTTTGCGA
GAAATAAACAAGCGCTCAGAACCGAACCTTGGCGAGCGCCTCAATCTCGC
GCGCTTCGAGGCCTCGACTGCCGTCTGAGGAGCCGCAGAGATGCGACCCG
CGAGAAGAGTTCAATCTGCTGTGATCGTAATACTTAG