mRNA_P-littoralis_Contig743.18.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig743.18.1
Unique NamemRNA_P-littoralis_Contig743.18.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig743.18.1 vs. uniprot
Match: A0A6H5KRV8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRV8_9PHAE)

HSP 1 Score: 204 bits (519), Expect = 1.100e-58
Identity = 99/124 (79.84%), Postives = 111/124 (89.52%), Query Frame = 1
Query:    1 KHKTFGQWVDLIVADGMAYLAVCIAIRTGDFVLREAALRRIAPLFLGYNKHLYHALCIRHLADVAMLSPAERLFMSETFSLSLSSVPGKNTALDEIQEMTMNKDFQAAATGTALRYLQRLGLTL 372
            KHKTFGQW D +++DGMAYLAV I I+TGDF LREAA+R+IAPLFLGYNK+LYHALCIRHLAD+A LSPAERLF+SETFSLSLS  PGKNT LDEIQEMTMNKD + AATGT +RYL+RL LTL
Sbjct:  435 KHKTFGQWADFLLSDGMAYLAVYIGIQTGDFDLREAAIRKIAPLFLGYNKNLYHALCIRHLADIARLSPAERLFISETFSLSLSGKPGKNTGLDEIQEMTMNKDVKQAATGTDVRYLERLTLTL 558          
BLAST of mRNA_P-littoralis_Contig743.18.1 vs. uniprot
Match: A0A6H5L7Q2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Q2_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 4.570e-58
Identity = 98/124 (79.03%), Postives = 109/124 (87.90%), Query Frame = 1
Query:    1 KHKTFGQWVDLIVADGMAYLAVCIAIRTGDFVLREAALRRIAPLFLGYNKHLYHALCIRHLADVAMLSPAERLFMSETFSLSLSSVPGKNTALDEIQEMTMNKDFQAAATGTALRYLQRLGLTL 372
            KHKTFGQW D +++DGMAYLAV I IRTGDF LREAA+R+IAPLFLGYNK+L HALCI+HLAD+A LSPAERLF+SETFSLS S  PGKNT LDEIQEMTMNKD + AATGT +RYLQRL LTL
Sbjct:  271 KHKTFGQWADFLLSDGMAYLAVYIGIRTGDFDLREAAIRKIAPLFLGYNKNLCHALCIQHLADIARLSPAERLFISETFSLSRSGKPGKNTGLDEIQEMTMNKDIKQAATGTDVRYLQRLNLTL 394          
BLAST of mRNA_P-littoralis_Contig743.18.1 vs. uniprot
Match: A0A6H5KQE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQE5_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 1.610e-56
Identity = 94/124 (75.81%), Postives = 108/124 (87.10%), Query Frame = 1
Query:    1 KHKTFGQWVDLIVADGMAYLAVCIAIRTGDFVLREAALRRIAPLFLGYNKHLYHALCIRHLADVAMLSPAERLFMSETFSLSLSSVPGKNTALDEIQEMTMNKDFQAAATGTALRYLQRLGLTL 372
            KHKTFGQWV++++ DGMAYLA+ I IR GDF LREAALRRIAPLFLGYNK+ YH LCI+HLAD+  +SPAER FMSETFSLSLS  PGKNT LDEIQEMTMNK+++ AATGT + YLQ+LGLTL
Sbjct:  429 KHKTFGQWVEMLLVDGMAYLALYIGIRIGDFDLREAALRRIAPLFLGYNKYKYHDLCIKHLADICRMSPAERSFMSETFSLSLSGTPGKNTGLDEIQEMTMNKEYKGAATGTEIGYLQKLGLTL 552          
BLAST of mRNA_P-littoralis_Contig743.18.1 vs. uniprot
Match: A0A6H5L2D3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2D3_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 5.080e-54
Identity = 91/124 (73.39%), Postives = 106/124 (85.48%), Query Frame = 1
Query:    1 KHKTFGQWVDLIVADGMAYLAVCIAIRTGDFVLREAALRRIAPLFLGYNKHLYHALCIRHLADVAMLSPAERLFMSETFSLSLSSVPGKNTALDEIQEMTMNKDFQAAATGTALRYLQRLGLTL 372
            KHKT GQWV++++ DGMAYLA+ I    GDF LREAALR+IAPLFLGYNK+ YH  CI+HLAD+  +SP ER FMS+TFSLSLS VPGKNT+LDEIQEMTMNKDF+ AATGT +RYLQ+LGLTL
Sbjct:  429 KHKTCGQWVEMLLVDGMAYLALYI----GDFDLREAALRKIAPLFLGYNKYKYHDSCIKHLADICRMSPTERSFMSKTFSLSLSGVPGKNTSLDEIQEMTMNKDFKGAATGTDIRYLQKLGLTL 548          
BLAST of mRNA_P-littoralis_Contig743.18.1 vs. uniprot
Match: A0A6H5JPG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPG5_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 9.280e-54
Identity = 89/124 (71.77%), Postives = 104/124 (83.87%), Query Frame = 1
Query:    1 KHKTFGQWVDLIVADGMAYLAVCIAIRTGDFVLREAALRRIAPLFLGYNKHLYHALCIRHLADVAMLSPAERLFMSETFSLSLSSVPGKNTALDEIQEMTMNKDFQAAATGTALRYLQRLGLTL 372
            KHKTFGQW DL+++DGMAYLAV I IRT DF LREAA+R+IAPLFLGYNK+LYHALCI++LAD+A LSPAERLF+SETFSLSLS     N+ L EIQ+M M KD + A TGT +R+LQRL LTL
Sbjct:  144 KHKTFGQWADLLLSDGMAYLAVYIGIRTEDFDLREAAIRKIAPLFLGYNKNLYHALCIQYLADIARLSPAERLFISETFSLSLSEKLSNNSGLGEIQKMIMTKDIKQAPTGTDVRHLQRLTLTL 267          
BLAST of mRNA_P-littoralis_Contig743.18.1 vs. uniprot
Match: A0A6H5KGL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGL9_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 4.510e-49
Identity = 87/124 (70.16%), Postives = 102/124 (82.26%), Query Frame = 1
Query:    1 KHKTFGQWVDLIVADGMAYLAVCIAIRTGDFVLREAALRRIAPLFLGYNKHLYHALCIRHLADVAMLSPAERLFMSETFSLSLSSVPGKNTALDEIQEMTMNKDFQAAATGTALRYLQRLGLTL 372
            KHKTFGQW +L++ DGMAYLAV I+IR GDF LREAA+R+IAPLFL YNK+LYHAL I+HLAD+A L P+ER F+   FSLSL+  PGKN  LDEIQEMTMNK+ + AA GT +RYLQRL LTL
Sbjct:  614 KHKTFGQWAELLLDDGMAYLAVYISIRVGDFDLREAAIRQIAPLFLDYNKNLYHALTIQHLADIANLRPSEREFLRGMFSLSLAGNPGKNVGLDEIQEMTMNKEIKQAAHGTDVRYLQRLALTL 737          
BLAST of mRNA_P-littoralis_Contig743.18.1 vs. uniprot
Match: A0A6H5JBA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA3_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.320e-19
Identity = 45/58 (77.59%), Postives = 51/58 (87.93%), Query Frame = 1
Query:  199 LSPAERLFMSETFSLSLSSVPGKNTALDEIQEMTMNKDFQAAATGTALRYLQRLGLTL 372
            +SPAER FMSETFSLSLS  PGKNT LDEIQEMTMNK+++ AATGT + YLQ+LGLTL
Sbjct:    1 MSPAERSFMSETFSLSLSGTPGKNTGLDEIQEMTMNKEYKGAATGTEIGYLQKLGLTL 58          
BLAST of mRNA_P-littoralis_Contig743.18.1 vs. uniprot
Match: A0A6H5KVM9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVM9_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 3.590e-16
Identity = 44/99 (44.44%), Postives = 60/99 (60.61%), Query Frame = 1
Query:    1 KHKTFGQWVDLIVADGMAYLAVCIAIRTGDFVLREAALRRIAPLFLGYNKHLYHALCIRHLADVAMLSPAERLFMSETFSLSLSSVPGKNTALDEIQEM 297
            +HKTF  W   ++ D  AYL    A+RTGDF+LR  ALRRIAP+F    +  Y  L + HLA+++ +S ++   MSE FS+SLS        LDE QE+
Sbjct:   39 EHKTFALWEQFLLHDFPAYLTFRTALRTGDFMLRLDALRRIAPIFYISGEDRYQFLVVDHLAEMSRMSESDLKVMSELFSVSLSKDACVRLGLDERQEV 137          
BLAST of mRNA_P-littoralis_Contig743.18.1 vs. uniprot
Match: A0A6H5JDT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDT2_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.930e-15
Identity = 43/99 (43.43%), Postives = 60/99 (60.61%), Query Frame = 1
Query:    1 KHKTFGQWVDLIVADGMAYLAVCIAIRTGDFVLREAALRRIAPLFLGYNKHLYHALCIRHLADVAMLSPAERLFMSETFSLSLSSVPGKNTALDEIQEM 297
            KHKTF  W   ++ D  AY+    A+RTGDF+LR  ALRRIAP+F    K  Y  L + HLA+++ +S ++   ++E FS+SLS        LDE QE+
Sbjct:  323 KHKTFALWEQFLLHDFPAYVTFRTALRTGDFMLRLDALRRIAPIFYITGKDRYQFLVVDHLAEMSTMSESDLKVIAELFSVSLSKDACARLGLDERQEV 421          
BLAST of mRNA_P-littoralis_Contig743.18.1 vs. uniprot
Match: A0A6H5JCT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCT7_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 3.550e-15
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = 1
Query:  175 RHLADVAMLSPAERLFMSETFSLSLSSVPGKNTALDEIQEMTMNKDFQAAATGTALRYLQRLGLTL 372
            +H      ++ AE  F  ETFSLSL+ +PGKNT LDEIQEMTMNK+F+ AATGT + YLQRL LTL
Sbjct:  433 KHKTHGQWMNDAEVEFTRETFSLSLAGIPGKNTGLDEIQEMTMNKEFKQAATGTDIAYLQRLCLTL 498          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig743.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5KRV8_9PHAE1.100e-5879.84Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L7Q2_9PHAE4.570e-5879.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQE5_9PHAE1.610e-5675.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2D3_9PHAE5.080e-5473.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPG5_9PHAE9.280e-5471.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGL9_9PHAE4.510e-4970.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBA3_9PHAE1.320e-1977.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVM9_9PHAE3.590e-1644.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDT2_9PHAE1.930e-1543.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCT7_9PHAE3.550e-1562.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig743contigP-littoralis_Contig743:33811..34182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog400682.PAC_15707724
Model size372
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.39e-14
EggNOG OGs2AENI@1|root,2RYW1@2759|Eukaryota,39ZI9@33154|Opisthokonta,3BE6W@33208|Metazoa
Cds size372
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791538.6468046-CDS-P-littoralis_Contig743:33810..341821680791538.6468046-CDS-P-littoralis_Contig743:33810..34182Pylaiella littoralis U1_48CDSP-littoralis_Contig743 33811..34182 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig743.18.1prot_P-littoralis_Contig743.18.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig743 33811..34182 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig743.18.1

>prot_P-littoralis_Contig743.18.1 ID=prot_P-littoralis_Contig743.18.1|Name=mRNA_P-littoralis_Contig743.18.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=124bp
KHKTFGQWVDLIVADGMAYLAVCIAIRTGDFVLREAALRRIAPLFLGYNK
HLYHALCIRHLADVAMLSPAERLFMSETFSLSLSSVPGKNTALDEIQEMT
MNKDFQAAATGTALRYLQRLGLTL
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mRNA from alignment at P-littoralis_Contig743:33811..34182-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig743.18.1 ID=mRNA_P-littoralis_Contig743.18.1|Name=mRNA_P-littoralis_Contig743.18.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=372bp|location=Sequence derived from alignment at P-littoralis_Contig743:33811..34182- (Pylaiella littoralis U1_48)
AAACACAAGACATTTGGACAGTGGGTGGATTTGATTGTCGCCGACGGGAT GGCATATCTCGCGGTATGCATTGCTATTCGAACGGGCGACTTCGTTCTGC GCGAGGCTGCACTTCGAAGAATCGCGCCGCTGTTCTTGGGCTACAATAAA CACCTGTACCACGCGTTGTGTATCCGGCATCTCGCCGATGTAGCCATGTT GAGTCCTGCCGAGCGTTTGTTCATGAGCGAAACGTTTAGCTTGTCGCTCT CTAGCGTCCCCGGGAAGAACACGGCCCTCGACGAGATCCAGGAGATGACT ATGAACAAGGATTTCCAAGCGGCGGCGACGGGGACTGCCTTGAGGTATCT CCAGCGGCTGGGCCTCACCCTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig743:33811..34182-

>mRNA_P-littoralis_Contig743.18.1 ID=mRNA_P-littoralis_Contig743.18.1|Name=mRNA_P-littoralis_Contig743.18.1|organism=Pylaiella littoralis U1_48|type=CDS|length=372bp|location=Sequence derived from alignment at P-littoralis_Contig743:33811..34182- (Pylaiella littoralis U1_48)
AAACACAAGACATTTGGACAGTGGGTGGATTTGATTGTCGCCGACGGGAT
GGCATATCTCGCGGTATGCATTGCTATTCGAACGGGCGACTTCGTTCTGC
GCGAGGCTGCACTTCGAAGAATCGCGCCGCTGTTCTTGGGCTACAATAAA
CACCTGTACCACGCGTTGTGTATCCGGCATCTCGCCGATGTAGCCATGTT
GAGTCCTGCCGAGCGTTTGTTCATGAGCGAAACGTTTAGCTTGTCGCTCT
CTAGCGTCCCCGGGAAGAACACGGCCCTCGACGAGATCCAGGAGATGACT
ATGAACAAGGATTTCCAAGCGGCGGCGACGGGGACTGCCTTGAGGTATCT
CCAGCGGCTGGGCCTCACCCTG
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