mRNA_P-littoralis_Contig743.13.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig743.13.1 vs. uniprot
Match: A0A6H5JUK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK3_9PHAE) HSP 1 Score: 231 bits (589), Expect = 1.030e-70 Identity = 110/155 (70.97%), Postives = 123/155 (79.35%), Query Frame = 2
Query: 86 CVLDMCGGPGDAVATRLRGTCEVITNDVNSRFSPDTNLDVTSVSFSDDFLKAL-GKQPDWVVTSPPYKNALTCVKTALSVANKGVALELPLSFLEPCHDRGGWLQANPPAVCVFLRRSRHTPAHCVMVGAFWGVWYTDSASCPSSSGTRLVFCPE 547
CVLDMCGGP DAVA R TCEV+TNDV+SR S TNLD + +SF D+F KA GKQPDWVVTSPPYK A+ VK AL+VA KGVAL+LPLSFLEPC DRGGWL NPPAVC+FLRR+++T AH V VG FWGVWYTD C S G+RLVFCPE
Sbjct: 148 CVLDMCGGPEDAVAQGFRSTCEVLTNDVSSRLSAGTNLDASLLSFRDNFRKANPGKQPDWVVTSPPYKGAVGFVKAALAVATKGVALKLPLSFLEPCADRGGWLVDNPPAVCIFLRRAKYTHAHHVKVGEFWGVWYTDGGCCGKSGGSRLVFCPE 302
BLAST of mRNA_P-littoralis_Contig743.13.1 vs. uniprot
Match: D7G0Y0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y0_ECTSI) HSP 1 Score: 202 bits (515), Expect = 5.840e-61 Identity = 96/155 (61.94%), Postives = 115/155 (74.19%), Query Frame = 2
Query: 86 CVLDMCGGPGDAVATRLRGTCEVITNDVNSRFSPDTNLDVTSVSFSDDFLKAL-GKQPDWVVTSPPYKNALTCVKTALSVANKGVALELPLSFLEPCHDRGGWLQANPPAVCVFLRRSRHTPAHCVMVGAFWGVWYTDSASCPSSSGTRLVFCPE 547
CVLDMCGGP DAVATRLR TCE++TNDV+S DTNLD + SF +DFL A GK+P+WV TSPPY ALT VK A+S+A KGV ++ + FLEPC D GGWLQ NPP++CVFLRR+++T A+ FWGVWYT SC + TRLVFCPE
Sbjct: 49 CVLDMCGGPTDAVATRLRSTCEILTNDVSSGRPADTNLDASLESFPEDFLAAYSGKRPEWVATSPPYSRALTFVKAAMSLATKGVTFKMHIFFLEPCADWGGWLQTNPPSLCVFLRRAKYTRANNAKTSEFWGVWYTQEMSCRNR--TRLVFCPE 201
BLAST of mRNA_P-littoralis_Contig743.13.1 vs. uniprot
Match: A0A6H5K049_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K049_9PHAE) HSP 1 Score: 203 bits (517), Expect = 6.880e-61 Identity = 97/136 (71.32%), Postives = 110/136 (80.88%), Query Frame = 2
Query: 86 CVLDMCGGPGDAVATRLRGTCEVITNDVNSRFSPDTNLDVTSVSFSDDFLKAL-GKQPDWVVTSPPYKNALTCVKTALSVANKGVALELPLSFLEPCHDRGGWLQANPPAVCVFLRRSRHTPAHCVMVGAFWGVWY 490
CVLDMCGG DAVA RLR TC+V+TNDV R SP TNLD +S SF+DDFL A G+QPDW+VTSPPYK AL VK AL+VA KGVAL+LPLSFLEPC DR GWLQANPPA+C+ + R+R+ PAH V VG FWGVWY
Sbjct: 90 CVLDMCGGTDDAVAIRLRDTCQVLTNDVGPRLSPATNLDASSASFTDDFLAAHHGQQPDWIVTSPPYKGALAFVKAALTVAKKGVALKLPLSFLEPCADRAGWLQANPPALCMMMSRARYQPAH-VRVGEFWGVWY 224
BLAST of mRNA_P-littoralis_Contig743.13.1 vs. uniprot
Match: D8LSI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI1_ECTSI) HSP 1 Score: 199 bits (507), Expect = 1.740e-60 Identity = 95/151 (62.91%), Postives = 114/151 (75.50%), Query Frame = 2
Query: 98 MCGGPGDAVATRLRGTCEVITNDVNSRFSPDTNLDVTSVSFSDDFLKAL-GKQPDWVVTSPPYKNALTCVKTALSVANKGVALELPLSFLEPCHDRGGWLQANPPAVCVFLRRSRHTPAHCVMVGAFWGVWYTDSASCPSSSGTRLVFCPE 547
MCGGP DAVATRLR TCE++TNDV+S DTNL+ + F +DFL A GK+P+WVVTSPPY ALT VK A+S+A KGVA ++P+ FLEPC DRGGWLQ NPP+VCVFLRR+++T A+ G FWGVWY SC + TRLVFCPE
Sbjct: 1 MCGGPTDAVATRLRSTCEILTNDVSSGRPADTNLNASLELFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVAFKMPIFFLEPCADRGGWLQTNPPSVCVFLRRAKYTRANNAKTGEFWGVWYPQEMSCRNR--TRLVFCPE 149
BLAST of mRNA_P-littoralis_Contig743.13.1 vs. uniprot
Match: A0A6H5K929_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K929_9PHAE) HSP 1 Score: 181 bits (459), Expect = 1.730e-53 Identity = 91/150 (60.67%), Postives = 101/150 (67.33%), Query Frame = 2
Query: 98 MCGGPGDAVATRLRGTCEVITNDVNSRFSPDTNLDVTSVSFSDDFLKALGKQPDWVVTSPPYKNALTCVKTALSVANKGVALELPLSFLEPCHDRGGWLQANPPAVCVFLRRSRHTPAHCVMVGAFWGVWYTDSASCPSSSGTRLVFCPE 547
MCGGP DAVA GTCEV+TNDV+SR SP GKQPDWVVTSPPYK A+ VK L+VA KGVAL LPLSF +PC DRG WL NPP +C FLRR+++T AH V VG FWGVWYTD C S G+RLVFCPE
Sbjct: 1 MCGGPEDAVALGFGGTCEVLTNDVSSRLSPAHP----------------GKQPDWVVTSPPYKGAVGFVKAVLAVAAKGVALRLPLSFRKPCADRGSWLVDNPPVMCGFLRRAKYTHAHHVKVGEFWGVWYTDGG-CGKSGGSRLVFCPE 133
BLAST of mRNA_P-littoralis_Contig743.13.1 vs. uniprot
Match: A0A6H5KHQ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ4_9PHAE) HSP 1 Score: 179 bits (455), Expect = 9.740e-51 Identity = 92/157 (58.60%), Postives = 110/157 (70.06%), Query Frame = 2
Query: 89 VLDMCGGPGDAVATRLRGTCEVITNDVNSRFS------PDTNLDVTSVSFSDDFLK-ALGKQPDWVVTSPPYKNALTCVKTALSVANKGVALELPLSFLEPCHDRGGWLQANPPAVCVFLRRSRHTPAHCVMVGAFWGVWYTDSASCPSSSGTRLVF 538
VLDMCGGP DAVA +LR TCEV+TNDV+SR S PDT+LD + +F+ +FL +QP+ VV SPPYK A+ VK AL VA GVAL+ LSFLEPC DR WL+ANPP VCVFLRR+ +TP H VM+G FWGVWY + GT+LVF
Sbjct: 139 VLDMCGGPDDAVARKLRDTCEVVTNDVSSRLSSDARRAPDTSLDASKSTFAAEFLADGFQQQPERVVASPPYKGAVKFVKAALCVAKHGVALKRSLSFLEPCVDRADWLEANPPTVCVFLRRASYTPEH-VMMGEFWGVWYCTGGDRTAVGGTKLVF 294
BLAST of mRNA_P-littoralis_Contig743.13.1 vs. uniprot
Match: D7FJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU4_ECTSI) HSP 1 Score: 175 bits (444), Expect = 4.850e-50 Identity = 86/123 (69.92%), Postives = 100/123 (81.30%), Query Frame = 2
Query: 77 LRRCVLDMCGGPGDAVATRLRGTCEVITNDVNSRFSP-----DTNLDVTSVSFSDDFLKAL-GKQPDWVVTSPPYKNALTCVKTALSVANKGVALELPLSFLEPCHDRGGWLQANPPAVCVFL 427
L CVLDMCGGPGDA+ATRL TC+V+TND+++R SP DTNLD + SF+ DFL A G++PDWV+TSPPYK AL VK+ALS+A KGVAL+LPLSFLEPC DRGGWLQANPPAVCVF
Sbjct: 99 LEGCVLDMCGGPGDAIATRLGATCKVVTNDISTRLSPGGLPPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCVFF 221
BLAST of mRNA_P-littoralis_Contig743.13.1 vs. uniprot
Match: A0A6H5JSV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSV3_9PHAE) HSP 1 Score: 164 bits (415), Expect = 2.410e-46 Identity = 80/126 (63.49%), Postives = 92/126 (73.02%), Query Frame = 2
Query: 173 SRFSPDTNLDVTSVSFSDDFLKALGKQ-PDWVVTSPPYKNALTCVKTALSVANKGVALELPLSFLEPCHDRGGWLQANPPAVCVFLRRSRHTPAHCVMVGAFWGVWYTDSASCPSSSGTRLVFCPE 547
S SPDTNLD +S SF+DDFL A +Q PDWVVT PPY AL VK AL VA KGVAL+LPLSFLEPC DR GWLQANPPA+C+ + R+R+ PAH V VG FWGVWY + SS T+L+F P
Sbjct: 49 SALSPDTNLDASSASFTDDFLAAHHEQQPDWVVTRPPYNGALAFVKAALPVAKKGVALKLPLSFLEPCADRAGWLQANPPALCMMMSRARYQPAH-VRVGEFWGVWYPPGSGYSSSDSTKLLFVPS 173
BLAST of mRNA_P-littoralis_Contig743.13.1 vs. uniprot
Match: A0A6H5KAM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM1_9PHAE) HSP 1 Score: 158 bits (399), Expect = 1.650e-44 Identity = 74/125 (59.20%), Postives = 91/125 (72.80%), Query Frame = 2
Query: 176 RFSPDTNLDVTSVSFSDDFLKAL-GKQPDWVVTSPPYKNALTCVKTALSVANKGVALELPLSFLEPCHDRGGWLQANPPAVCVFLRRSRHTPAHCVMVGAFWGVWYTDSASCPSSSGTRLVFCPE 547
+ SPDTNLD +S S++DD+L A G+QPDWVV SPPYK AL+ VK AL+VA +GVAL+LPLSFLEPC DR GWLQ NPP++C+ + R+R+ PAH V VG FWGVWY T+L F P
Sbjct: 9 KLSPDTNLDASSTSYADDYLAAHNGQQPDWVVASPPYKGALSFVKAALTVAKEGVALKLPLSFLEPCADRAGWLQENPPSLCMMMSRARYQPAH-VRVGEFWGVWYPPGGGSSIGDSTKLSFLPS 132
BLAST of mRNA_P-littoralis_Contig743.13.1 vs. uniprot
Match: A0A6H5KU02_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU02_9PHAE) HSP 1 Score: 161 bits (408), Expect = 3.090e-44 Identity = 75/121 (61.98%), Postives = 92/121 (76.03%), Query Frame = 2
Query: 188 DTNLDVTSVSFSDDFLKAL-GKQPDWVVTSPPYKNALTCVKTALSVANKGVALELPLSFLEPCHDRGGWLQANPPAVCVFLRRSRHTPAHCVMVGAFWGVWYTDSASCPSSSGTRLVFCPE 547
DTNLD + SF +DFL A GK+P+WVVTSPPY ALT VK A+S+A KGV ++P+S LEPC DRGGWLQ NPP+VC+FLRR+++T A+ +G FWGVWYT SC + TRLVFCPE
Sbjct: 138 DTNLDASLESFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVEFKMPISCLEPCADRGGWLQTNPPSVCLFLRRAKYTRANNAKMGEFWGVWYTQEVSCRNK--TRLVFCPE 256 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig743.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig743.13.1 >prot_P-littoralis_Contig743.13.1 ID=prot_P-littoralis_Contig743.13.1|Name=mRNA_P-littoralis_Contig743.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=151bp MCGGPGDAVATRLRGTCEVITNDVNSRFSPDTNLDVTSVSFSDDFLKALGback to top mRNA from alignment at P-littoralis_Contig743:28861..31075+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig743.13.1 ID=mRNA_P-littoralis_Contig743.13.1|Name=mRNA_P-littoralis_Contig743.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2215bp|location=Sequence derived from alignment at P-littoralis_Contig743:28861..31075+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig743:28861..31075+ >mRNA_P-littoralis_Contig743.13.1 ID=mRNA_P-littoralis_Contig743.13.1|Name=mRNA_P-littoralis_Contig743.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=453bp|location=Sequence derived from alignment at P-littoralis_Contig743:28861..31075+ (Pylaiella littoralis U1_48)back to top |