mRNA_P-littoralis_Contig743.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig743.10.1
Unique NamemRNA_P-littoralis_Contig743.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig743.10.1 vs. uniprot
Match: D7FZI4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI4_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 2.330e-29
Identity = 65/124 (52.42%), Postives = 83/124 (66.94%), Query Frame = 1 
Query:  157 PWRKEGVDGLYFDRDADS-YDNVDGDPVFSTGIAVSSDGFNYWSFGGKVYNVNATYVALSCLSPALLRRLRSWSLVCAGSKGR-WEEEVGGLMETIQHLEKGCRARMKTQDGHSVTVTGILRDG 522
            PWR++G  G +FDR A   + N+ G PVFSTG+A SSD FNY+S  GK Y+VNAT+V L CLSPALLRRLRSW L   G  G  WE +V  LM+ I+ L+ GC+A +    G   T+T ++R G
Sbjct:    3 PWRQQGYHGWFFDRRASGVHANLTGLPVFSTGLACSSDAFNYFSLSGKRYSVNATFVGLGCLSPALLRRLRSWHLATLGLPGAAWELDVLPLMKIIRLLQNGCKAEIAV--GDKQTITALVRMG 124
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BLAST of mRNA_P-littoralis_Contig743.10.1 vs. uniprot
Match: A0A6H5JXS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXS6_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.360e-16
Identity = 40/81 (49.38%), Postives = 53/81 (65.43%), Query Frame = 1 
Query:  259 SSDGFNYWSFGGKVYNVNATYVALSCLSPALLRRLRSWSLVCAGSKGR-WEEEVGGLMETIQHLEKGCRARMKTQDGHSVT 498
            SSD FNY+S  G+ ++V+AT+V L CLSP LLRRLRSW L   G  G  WE ++  LME I+ L+ GC+  +   D  +VT
Sbjct:   60 SSDAFNYFSLSGRKHSVSATFVGLGCLSPTLLRRLRSWYLATLGLPGAAWELDILPLMEIIRWLQNGCKTEISIGDKQTVT 140
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig743.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZI4_ECTSI2.330e-2952.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXS6_9PHAE1.360e-1649.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig743contigP-littoralis_Contig743:22262..25421 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size653
Hectar predicted targeting categoryother localisation
Exons3
Cds size555
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791538.3479612-UTR-P-littoralis_Contig743:22261..223211680791538.3479612-UTR-P-littoralis_Contig743:22261..22321Pylaiella littoralis U1_48UTRP-littoralis_Contig743 22262..22321 +
1680791538.4017751-UTR-P-littoralis_Contig743:25383..254211680791538.4017751-UTR-P-littoralis_Contig743:25383..25421Pylaiella littoralis U1_48UTRP-littoralis_Contig743 25384..25421 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791538.3650525-CDS-P-littoralis_Contig743:22321..227631680791538.3650525-CDS-P-littoralis_Contig743:22321..22763Pylaiella littoralis U1_48CDSP-littoralis_Contig743 22322..22763 +
1680791538.3786893-CDS-P-littoralis_Contig743:24830..249091680791538.3786893-CDS-P-littoralis_Contig743:24830..24909Pylaiella littoralis U1_48CDSP-littoralis_Contig743 24831..24909 +
1680791538.3904505-CDS-P-littoralis_Contig743:25349..253831680791538.3904505-CDS-P-littoralis_Contig743:25349..25383Pylaiella littoralis U1_48CDSP-littoralis_Contig743 25350..25383 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig743.10.1prot_P-littoralis_Contig743.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig743 22322..25383 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig743.10.1

>prot_P-littoralis_Contig743.10.1 ID=prot_P-littoralis_Contig743.10.1|Name=mRNA_P-littoralis_Contig743.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=185bp
MTSQELNEQVPTFLGEGFVTFLTNPRRVKEQRPWRKEGVDGLYFDRDADS
YDNVDGDPVFSTGIAVSSDGFNYWSFGGKVYNVNATYVALSCLSPALLRR
LRSWSLVCAGSKGRWEEEVGGLMETIQHLEKGCRARMKTQDGHSVTVTGI
LRDGRSPRHLPQGNAHSGQHSGSRCRVEHQPSRI*
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mRNA from alignment at P-littoralis_Contig743:22262..25421+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig743.10.1 ID=mRNA_P-littoralis_Contig743.10.1|Name=mRNA_P-littoralis_Contig743.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3160bp|location=Sequence derived from alignment at P-littoralis_Contig743:22262..25421+ (Pylaiella littoralis U1_48)
GTCAAGGTGCAAGTGGATGCCCTCGATGCCCCCTGCCTCGTCTTACCGGC
GGGTACCGATATGACCTCGCAGGAATTGAACGAGCAGGTGCCTACATTCC
TCGGTGAAGGGTTTGTTACTTTTCTCACCAACCCCAGACGGGTGAAGGAA
CAACGACCGTGGAGGAAGGAGGGCGTGGATGGCTTGTACTTCGACAGAGA
CGCCGATAGCTACGACAACGTTGATGGCGACCCTGTATTTTCGACGGGGA
TTGCTGTCTCCAGCGACGGCTTCAACTATTGGTCGTTCGGGGGGAAAGTC
TACAACGTCAACGCCACGTACGTGGCTCTGAGCTGTTTGTCACCCGCTCT
CCTACGACGCCTACGTTCATGGTCGTTGGTGTGTGCGGGTTCGAAGGGGC
GTTGGGAGGAGGAGGTCGGCGGACTAATGGAAACCATTCAGCACCTCGAG
AAAGGCTGTCGCGCAAGAATGAAGACTCAAGACGGGCACAGTGTCACTGT
GAGTATCTGTTTGCATTTTCTTTTCTTTACACTTATTTCTACCACAGAGT
GATCAGGGAGTCAGGCCTGAATGCCAGCGCTTGCCATTCCGCGCAATTTT
TCGGTTTCGTGCAGGCGAGCGCAGTTTTGTGATATTAAGTTATTGCCCCG
CGTGCCGCAAACGTAATTTCATTATTTACCTGGTacTTTGTTCCCCGGCC
TGATGCCCCATGCCTCTCCACTGTCTGCAACTTTATCTTTTTTGTTGGTG
ATGTTTCTTTGTTAAATTTAGTGTTTTCGTCCCTACCATCTATTTCGACA
GCGTCTCGTCATATTCAGTGCGACGCCGATCTCGTGAGAGAGGGGTAGTG
GTTCCGCACGTGGATAACCCGCTTAAGAAGCTGGTGTTCGACCGAGTTCG
GGGCATCGGAGTTGACATACCGCACCAAGACTCCCTTGTAAGTAAAGACG
TATTTTAACACTCAATATTGCGGTGACAACTTCAACAGGCGCATGTTTTT
GCTTGGTGGACTTCAAAGTACCTGATTCCGACTCTGATTCGTGGTGGTGA
TGTGTGATGTGTGATGTTTGTAGTTTTCCTTGTCAGCACGGCTCGGCACC
GTAAATTTTATGCGGCCGGTGACTTCACTGACCATGGTCTCCTTTCCCAT
TTGTTTTCCCGCCCAACCACCATTGGTTTCAAGAACAAGGCAAAGAGCAT
GATACGcttCTTGCTGAATGCACTCAACACCGACGGATCGGCGCTCGTTT
CCGGGCGGTTGAAGCTGCGCTCGATAATACCACCAAACGCGGAGCCGCTT
GGAGATGTCACAACAGACGGCGATTTTtcTACCTTGACTGGATACCAGAT
CTGGGTGCTGAGCAGCATTCTGCCTCTGCTTTTCAGGCCTATTTTCGCCA
ACCACATGTCCATGGTAAGCAAAATAATCCGTCGATTTTGGGCTTCAGGT
CAACGCCCAAGTTTCTTACACCCTTTGTTTTTTACTATACCTTTTGAGTT
TCTTCCGGGGGGGTGGGGAGGCGGTATTGGGTGAAGCTGGGGGGGGGGAG
GTGGTGGGGAGGCGGTATTGACGACGTGAAGCTCGGGGGACATATTATGT
ATTCAGCGCAATGCCTACCAATGGTCGGCGTTGTTTGTTCTTTTTTTGCA
CACACAGCATGATTCTATTGAGTGAAGCGTATTCGGGGCCGATATTTTTT
ACCCGCCCCTCCCTCCGGAGTTACAAACAGTGTCACGTTCTTCATGGGGC
AACTCTAACTTCTACGGTAGTGAGAGACGATATCCAACAATCACATCCCG
TGAAGTTCATGTACCTCTCTGTTATCCCTCCAAACCCCCCCCGGTAcCCT
CCGCGACTGCAGAAGGCCTACGTAAAAGTGGTCGACATCGCGGCGGTGGC
TCAGCGTAAGGATTATCAAATTGTGGCAGCGTGGCTGGTCTAAAGAACGT
ATGCGGAGCGTTCTTGGACTTGATCACGGCCTGTAGTGCGAGCTCATTCA
TGGTGCGGGCTAAATCGTTCACGGAAGCTGAGCTAGAGATTCTGCTGGAA
TGCGAGGGATCAGGTTAGAAAATAAATGTACAGGGTGTGGTCGCGGGTTA
TGGTTATCGAAGGTTGCCGCCTCCCGCCGCTCGGAAACACGATGTATACC
CACCTCTTACTTGCTCCAAACACGATACGATGCATAGCTTGTGGTCACCC
TCTTTGGTTATGCTCATGCGCGAGTTGTCACCCCCGGCAAAAACCGTAGA
TAAAAAAAAGATTGCGTTTTTCAAGAGTCGGAGAAAAATCCGGCAGTAAG
CTTCTCCCTGCTCTCAGCAAAACCCCTCAGCGTATCCCCTGGACCTCTAA
CTCCCGTAGTCCTTTTCTCTGTCGTCGATGTGGGCCAAATGGTTGTTCAG
TGGGAAATTGGCACCGCATAATAAACCATTGCGTCCATTGTATCCCAGCA
ATATGGTTTGTGGTACCACTCGGGACCAACCCCGTATTCTCGCTCACAAC
ATGTTATTTTTAGGACAACACGAGCCAACGCTGCGACGGCATACTCTCTT
CATGGTGCTATAGGTGGAGCAGGCATTTTGCGTGATGGGAGAAGCCCTAG
GCACCTTCCACAAGGGAATGCACATTCCGGACAACATTCGGGATCTAGGT
AGGTCGCATTGTCCCACACAGATATTTTAGGGGTTCCAGGCGACGTTATT
TCAGTAATTGCAGGCCCGCGTAATTTGTGGCTGTGCTACTATTCAGCCTC
GTATTAGAGACCAACTGGTATTTCACAGCAAGTAGGCACCATAGGCCAAT
TGACCCCCCCCCCCCCCCCGGAGCAATGTAGGATACGCTTTTTCACAGAA
ATAGCACTCTCGCTCCTGGAGGTGGCCCGGGGTTCTCTTTATTTTGTTCG
AACCGGAGCTGGGATGCAAATATCCCAATCCGCTACAACCATTGTAGAGT
ATGTTTGGAACGGCCAAGGTACTCGCGATTTCAATAGTATTTTTGGTGCG
TTACGCTGCATTTTCGCACTGACCCTCCAAAACCCAAACATTTCGTTCCT
GTATTTTTTTCAGGTCTTCTTTAATTTTGTTCTACCAGGTGCCGTGTCGA
ACACCAACCCAGCCGAATCTAAGCACAAGCAACACAAGAAAGGGTCGGCA
TCATCTAGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig743:22262..25421+

>mRNA_P-littoralis_Contig743.10.1 ID=mRNA_P-littoralis_Contig743.10.1|Name=mRNA_P-littoralis_Contig743.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=555bp|location=Sequence derived from alignment at P-littoralis_Contig743:22262..25421+ (Pylaiella littoralis U1_48)
ATGACCTCGCAGGAATTGAACGAGCAGGTGCCTACATTCCTCGGTGAAGG
GTTTGTTACTTTTCTCACCAACCCCAGACGGGTGAAGGAACAACGACCGT
GGAGGAAGGAGGGCGTGGATGGCTTGTACTTCGACAGAGACGCCGATAGC
TACGACAACGTTGATGGCGACCCTGTATTTTCGACGGGGATTGCTGTCTC
CAGCGACGGCTTCAACTATTGGTCGTTCGGGGGGAAAGTCTACAACGTCA
ACGCCACGTACGTGGCTCTGAGCTGTTTGTCACCCGCTCTCCTACGACGC
CTACGTTCATGGTCGTTGGTGTGTGCGGGTTCGAAGGGGCGTTGGGAGGA
GGAGGTCGGCGGACTAATGGAAACCATTCAGCACCTCGAGAAAGGCTGTC
GCGCAAGAATGAAGACTCAAGACGGGCACAGTGTCACTGTGACAGGCATT
TTGCGTGATGGGAGAAGCCCTAGGCACCTTCCACAAGGGAATGCACATTC
CGGACAACATTCGGGATCTAGGTGCCGTGTCGAACACCAACCCAGCCGAA
TCTAA
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