mRNA_P-littoralis_Contig743.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig743.6.1
Unique NamemRNA_P-littoralis_Contig743.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig743.6.1 vs. uniprot
Match: A0A6H5LGI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGI1_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 7.380e-26
Identity = 56/94 (59.57%), Postives = 64/94 (68.09%), Query Frame = 2 
Query:   14 LISVWSILTRPSRAALQLLLDLLRYVDPDGCRFDPRDLPRSAEHLIARGRLLLPLLKVFERPIKDKGGNETYVLDIPFGVLLQRMFSCPAVMEE 295
            LI VW++  RPSR +LQ+LL L  +VD  G RF P D PRS EHLI+R R  LP L VFER I DK G     +DIPF VLLQRM SCP V+EE
Sbjct:   68 LIGVWAVTHRPSRKSLQILLGLFSFVDRQGYRFRPEDAPRSVEHLISRMRKRLPHLPVFERTINDKNGETAKAIDIPFNVLLQRMLSCPRVVEE 161
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BLAST of mRNA_P-littoralis_Contig743.6.1 vs. uniprot
Match: D7G6T4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6T4_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 5.030e-5
Identity = 36/105 (34.29%), Postives = 56/105 (53.33%), Query Frame = 2 
Query:    2 LTMMLISVWSILTRPSRAALQLLLDLLRYVDPDGCRFDPRDLPR-SAEHLIARGRLLLPLLKVFERPI------KDKGGNETYVLDIPFGVLLQRMFSCPAVMEE 295
            L+++L+S ++   + SR  L+ +L++LR+VD DG RF+  DL     EH  AR R   PLL+V +R +      K  G       DIP  +++ R+      MEE
Sbjct:  100 LSVLLLSQFTSKYKVSRVMLRGMLEMLRFVDDDGSRFNIDDLKDVHHEHFQARRRKYYPLLQVVKRKVEASATAKKAGETTADAYDIPTNLVVDRLLRSAPSMEE 204
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig743.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LGI1_9PHAE7.380e-2659.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6T4_ECTSI5.030e-534.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig743contigP-littoralis_Contig743:21424..21718 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size295
Hectar predicted targeting categorysignal peptide
Exons1
Cds size288
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791538.2957788-UTR-P-littoralis_Contig743:21423..214301680791538.2957788-UTR-P-littoralis_Contig743:21423..21430Pylaiella littoralis U1_48UTRP-littoralis_Contig743 21424..21430 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791538.311324-CDS-P-littoralis_Contig743:21430..217181680791538.311324-CDS-P-littoralis_Contig743:21430..21718Pylaiella littoralis U1_48CDSP-littoralis_Contig743 21431..21718 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig743.6.1prot_P-littoralis_Contig743.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig743 21431..21718 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig743.6.1

>prot_P-littoralis_Contig743.6.1 ID=prot_P-littoralis_Contig743.6.1|Name=mRNA_P-littoralis_Contig743.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=96bp
MMLISVWSILTRPSRAALQLLLDLLRYVDPDGCRFDPRDLPRSAEHLIAR
GRLLLPLLKVFERPIKDKGGNETYVLDIPFGVLLQRMFSCPAVMEE
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mRNA from alignment at P-littoralis_Contig743:21424..21718+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig743.6.1 ID=mRNA_P-littoralis_Contig743.6.1|Name=mRNA_P-littoralis_Contig743.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=295bp|location=Sequence derived from alignment at P-littoralis_Contig743:21424..21718+ (Pylaiella littoralis U1_48)
CCTTACGATGATGCTCATCAGTGTTTGGTCTATTCTTACGCGTCCCTCGC
GCGCGGCACTACAACTTCTCCTCGATTTACTCCGGTATGTGGACCCTGAT
GGATGCAGATTCGACCCTCGAGATTTGCCTCGGTCGGCGGAGCACCTTAT
CGCCAGGGGGCGGTTGCTTCTTCCGCTTCTGAAGGTGTTCGAGCGTCCAA
TCAAGGACAAGGGAGGAAATGAGACGTACGTTCTTGACATTCCATTCGGG
GTGCTGCTTCAGCGCATGTTCAGCTGCCCCGCAGTGATGGAGGAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig743:21424..21718+

>mRNA_P-littoralis_Contig743.6.1 ID=mRNA_P-littoralis_Contig743.6.1|Name=mRNA_P-littoralis_Contig743.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=288bp|location=Sequence derived from alignment at P-littoralis_Contig743:21424..21718+ (Pylaiella littoralis U1_48)
ATGATGCTCATCAGTGTTTGGTCTATTCTTACGCGTCCCTCGCGCGCGGC
ACTACAACTTCTCCTCGATTTACTCCGGTATGTGGACCCTGATGGATGCA
GATTCGACCCTCGAGATTTGCCTCGGTCGGCGGAGCACCTTATCGCCAGG
GGGCGGTTGCTTCTTCCGCTTCTGAAGGTGTTCGAGCGTCCAATCAAGGA
CAAGGGAGGAAATGAGACGTACGTTCTTGACATTCCATTCGGGGTGCTGC
TTCAGCGCATGTTCAGCTGCCCCGCAGTGATGGAGGAA
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