mRNA_P-littoralis_Contig742.42.5 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig742.42.5
Unique NamemRNA_P-littoralis_Contig742.42.5
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig742.42.5 vs. uniprot
Match: D8LHS0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHS0_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 4.710e-30
Identity = 73/156 (46.79%), Postives = 94/156 (60.26%), Query Frame = 1 
Query:    7 DAIDKCIVEVLAKNTSVDETISWQAALDSTSWPDYGDQDFPDHLAFHSARPALITPQGQNRACMAIIALGPGLKLPLDRAGEFGSSKLFDDDGDGAKLDTLRKALQHPQAVLSMTVYDHLTFMDAADKGSSLHHAEEMSRKPKHYALIVRMGRLVR 474
            + ++  I E LA+ T     +SW+ AL +T+WP+    D      F SA P+LITPQGQNRA MA+IAL   L  PL RAGEFG S LF +D   AK   L K L    A   + VY+ L +  AA+KG++LH  E  SRKP H+A+I  +GRLVR
Sbjct:  106 EQLETAIGEALAEGTD----LSWETALAATTWPN---DDVLPSKEFVSAAPSLITPQGQNRAAMAVIALAGDLGCPLSRAGEFGQSNLFPEDS-AAKTLELAKVLTGEHAKFQVNVYNFLDYAAAAEKGTNLHKGESQSRKPGHFAVISGLGRLVR 253
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BLAST of mRNA_P-littoralis_Contig742.42.5 vs. uniprot
Match: D7FRB5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRB5_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 2.180e-29
Identity = 74/158 (46.84%), Postives = 93/158 (58.86%), Query Frame = 1 
Query:   70 SWQAALDSTSWPDYG--DQDFPDHLAFHSARPALITPQGQNRACMAIIALGPGLKLPLDRAGEFGSSKLFDDDGDGAKLDTLRKALQHPQAVLSMTVYDHLTFMDAADKGSSLHHAEEMSRKPKHYALIVRMGRLVRQVFVNGGRE-GGFAEEVLGKG 534
            SW  ALD T+W   G    DF D++      P LITPQGQNRA M I+ LGP L L   RAGEFG S LF+ D + +K + L+ AL  P+A+  + VY+HL + D   KG +LH  E  SRKP HYAL  R+G +V+QV          FA EV+G G
Sbjct:   97 SWSTALDGTTWRGEGCPSGDFTDNM------PKLITPQGQNRAAMCIMVLGPELGLSSARAGEFGESALFESDSE-SKTEQLKTALSCPKALFCVNVYNHLGYSDCMAKGDNLHTGETESRKPAHYALFRRLGYVVQQVMNPSTTVYDAFAIEVMGPG 247
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig742.42.5 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHS0_ECTSI4.710e-3046.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRB5_ECTSI2.180e-2946.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig742contigP-littoralis_Contig742:134035..137855 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size538
Hectar predicted targeting categoryother localisation
Exons4
Cds size537
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791538.056292-CDS-P-littoralis_Contig742:134034..1341451680791538.056292-CDS-P-littoralis_Contig742:134034..134145Pylaiella littoralis U1_48CDSP-littoralis_Contig742 134035..134145 -
1680791538.0686955-CDS-P-littoralis_Contig742:136136..1362761680791538.0686955-CDS-P-littoralis_Contig742:136136..136276Pylaiella littoralis U1_48CDSP-littoralis_Contig742 136137..136276 -
1680791538.078318-CDS-P-littoralis_Contig742:136998..1371821680791538.078318-CDS-P-littoralis_Contig742:136998..137182Pylaiella littoralis U1_48CDSP-littoralis_Contig742 136999..137182 -
1680791538.0898533-CDS-P-littoralis_Contig742:137753..1378551680791538.0898533-CDS-P-littoralis_Contig742:137753..137855Pylaiella littoralis U1_48CDSP-littoralis_Contig742 137754..137855 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig742.42.5prot_P-littoralis_Contig742.42.5Pylaiella littoralis U1_48polypeptideP-littoralis_Contig742 134035..137855 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig742.42.5

>prot_P-littoralis_Contig742.42.5 ID=prot_P-littoralis_Contig742.42.5|Name=mRNA_P-littoralis_Contig742.42.5|organism=Pylaiella littoralis U1_48|type=polypeptide|length=179bp
QADAIDKCIVEVLAKNTSVDETISWQAALDSTSWPDYGDQDFPDHLAFHS
ARPALITPQGQNRACMAIIALGPGLKLPLDRAGEFGSSKLFDDDGDGAKL
DTLRKALQHPQAVLSMTVYDHLTFMDAADKGSSLHHAEEMSRKPKHYALI
VRMGRLVRQVFVNGGREGGFAEEVLGKG*
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mRNA from alignment at P-littoralis_Contig742:134035..137855-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig742.42.5 ID=mRNA_P-littoralis_Contig742.42.5|Name=mRNA_P-littoralis_Contig742.42.5|organism=Pylaiella littoralis U1_48|type=mRNA|length=3821bp|location=Sequence derived from alignment at P-littoralis_Contig742:134035..137855- (Pylaiella littoralis U1_48)
CAGGCTGACGCCATTGACAAATGCATCGTGGAAGTCCTGGCCAAGAACAC
TTCTGTAGACGAGACGATTTCGTGGCAAGCTGCACTTGACTCCACATCAT
GGGTGAGAAATAAAAACGAAGTTTCGCACGGATCATGCTGTGGTGATTTT
CGGTCATTCCTGAAACCCTTACCGTACCCCAAAAAATGTGGTTGATTAGA
GATGCATTGGAAGGATGCTGTTGTTCTTTGCGCTCTTGCACTAGTCTGAG
TGCAGCCGGGATGTTGGTGAACGCCGAACGTAGGGGGGTTCGGGAATGTG
TGTCCACGTCCTGAAGGGGCTTATGGCATAAAAAAACTTAAAACAAACCC
TCGTAACATGTAGCAGATCGATAAATCGGGTAGAACGTTCAGGAGGGTGA
AGGGTCTCAATCCAAGCGGTTGTGAATACGTGCTCGGGATTATTATCGAA
AGGTGTCCAATTTTTTTTTGTCACAATTTTCACTTATATCCGAGGCCCTC
GTCTAGATTGAAGACCCTGCATTATCCAACCGTGAGCCTAGCTGTCGATG
GAGTGTACCCTCTTCGAACTACGCACATCGCGCTCAATATACAGCTCGCC
TGGTACACGGTATATTCGCCTACCTAACCCTAACCCCTATCACATCCGCG
TCCCCACTCATGTGCTTTCACAGCCCGACTACGGCGATCAGGATTTCCCA
GACCATCTCGCTTTTCATTCGGCTCGTCCGGCCCTGATTACCCCCCAAGG
CCAAAACCGTGCCTGCATGGCTATTATAGCGCTCGGACCCGGCCTTAAAC
TGCCGCTGGACCGAGCTGGGGAATTTGGCTCATCGAAGCTCTTCGACGAC
GACGGTGGTAAGGATTTACCAATCACCCTGCAGTACGATTGACAGCCCTC
ACCCCCAACTCAAAATAATTGTAGCCTTACTTTACATCAGTAGCAGTAGG
CATGAGTGTGACTGAGGAGAGAGCAAGCGTCAACAGGCAGACCTCGTGGC
AAGACATGTTTCGACTTACTGCATTCCTTTTATTTAATTTTAATGTAATG
ATCCCCCCTTCCCCGCCTTCCAGTCTTTTTGCTCTTTCCTCTCCACTCGA
TATATGTAATTTGTTCCTGCTTGTCACTTTTTGTTTTCCCTTTTTGTTCC
CTGTTTCCTCTTTGTTTGGCGGCCTCTTTTGCGTGCAGTCTTCGTGCCCT
CCTTGTATCTTTTTATTTTTTTATTTCGTCTTTCGTCAATTGATGAAGAA
GGTACTGGACCATATGCGCACTGATTTGCTTTGCCTTGGTTTGTCATGGC
CCTATGCTCTGGTTCGGTACACGTTTTCATTTGGCCATCATAGATGGTAC
TCCGATGGTAACCTATTTATTGTGACTGTGGTTGATCATCGTCTATTTAT
TTTCTTATACTTTTCCTCCTAGCACGATTTGTGCTTGGTTTGTGACCACG
GGCTAGACTGCGGCGGTAGTGGCCTAATGTGAGAATCAACAACAAGAACT
CTCACCCTATTACCAACCATTCGCGCTGCTTTACTGATGGTGCACCGTTT
TCAAATCACTTGTACACTCTTCATCACAGATGGCGCCAAGCTCGACACCC
TGAGGAAAGCTTTACAACACCCCCAAGCCGTGTTGAGCATGACCGTCTAC
GACCACCTGACGTTTATGGACGCGGCAGATAAGGGCAGCAGCTTACACCA
TGCAGAGGAGATGTCTCGGGTAAGAATCGTCTTTTGTTAGGATCACGTCC
TCCAGGTTTCGTTAGGTCTTATCATGACAACGGTCGGAGATTGTAATACG
GGTGTGAATGACACGAACCCCGGACTCGTCATGCGTAAAATCATCCCCGT
CCTCATGGCTGGTGTGCTGGGTATCTACGGTCTCGTCGTTAGAGTCATCC
TTTCTGGTCCAGTGAGTGCACAAAAAACAAGGGAGTTTCTTCGAGGGTCT
GTTGTGGTCGCGTCCCTGTAGAGTCGTGGTTCCTTACCTTCGGAGCTCAA
ATAATCGAACTACACCTTATTCAAAGCTTTTCATACACATGGCATTTGTC
TCGCGGTTACAGGATCTCTGTTAAATACTTTGTTGACCCTACCTGGTTTC
GCCTCCGTGTTTCACATAGTCTACGCGACGCAACAAGAGGCCGAAATCAC
GGCGAATGTCATTGATTGCTTCTTGTTCGATACATATCAATTTGGAAATA
TTACTCATGACGGGCTGGTTCCCCAGGGATTTATTTTGGAGTTGTTTGTG
GGCGTTGTCGTTTCTTCAATATCTACATCAGAACTCTCTAACAAAGGTTG
ACCACATACAGCAGTAGTTCACTGGTTCCTCACATGAGGAGCTATTTGAT
CGTCGAAGCTATTTGATCGTCGTTAGAGTCATCCTTTCTGGTCCAGTGAG
TGCACAAAAAACAAGGGAGTTTTTTCGAGGGTCCGTGGCGGTCGCGTCCC
TGCAGAGTTGTGGTTCCTTACATTACTCATGACGGGCTGGTTCCCCAGGG
ATTTATTTTGGAGTTGTTTGTGGGCGTTGTCGTTTCTTCAATATCCACAT
AAGGATTTCTAACAAAGGTTGACTACATACAGCAGTAGTTCACGGTTACA
TGAGGAGCTATTTGATCGTCGTTATAGTCATCCTTTCGGGTCCAGTGAGT
GCACAAAAAACAAGGGAGATTTTTTCGAGGGTCCGTTGTGGTCGCGTCCC
TGTAGAGTTGTGGTTCCTTACCTTCGGAGCTCAAATAATCGAACTACACC
TTATTCAAAGCTTTTCATACACATGGCATTTGTCTCGCGGTTACAGGATC
TCTGTTAACTACTATGTTGACCCTACCTGGTTTCGCCTCCGTGCTTCACA
TGTAGTCTACGCGACGCAACAAGAGGCCGAAATCACGGCGAATGTCATTG
ATTGCTTCTTGTTCGATACATATCAATTTGGAAATATTACTCATGACGGG
CTGGTTCCCCAGGGATTTATTTTGGAGTTGTTTGCGGGCGTTGTCGTTTC
TTCAATATCTACATCAGAACTCTCTAACAAAGGTTGACCACATACAGCAG
TAGTTCACTGGTTCCTCACATGAGGAGCTATTTGATCGTCGAAGCTATTT
GATCGTCGTTAGAGTCATCCTTTCTGGTCCACACAAAAAACAAGGGAGTT
TTTTCGAGGGTCCGTGGCGGTCGCGTCCCTGTAGAGTTGTGGTTCCTTAC
ATTACTCATGACGGGCTGGTTCCCCAGGGATTTATTTTGGAGTTGTTTGT
GGGCGTTGTCGTTTCTTCAATAACTACATAAGAACTCTCTAACAAAGGTT
CCTCACATTAGGAGCTATTTGATGTGAGCCGCTTGAGGGCGTCGTTGACC
ACATTCTGGCAACTCTTGTTCCTCAACTGAAAGGACGGATTTGATTTGAG
CAGGATGAGGAAGTTCGTTAACCTCGAACATATTCTTGGAGGAAGTCAGC
CACATGATATACTCACAGTTTGCGTTCAAGAAACAGTACCTCCATTCCCA
CACAAGCAATAATTGTTAGACATACATCAAACCATGAAACACGTACCGGT
AGTTGAGAAATGGACGGTATCCCGGAACTAGCAACCTATAACATGTTCAA
CTTTCAGAAGGCCCGTGCTACATGTTGCTCTGGTAGGCCGCCGCATGTAT
ATAACTTTCGGCATACTGCTATCCCTCCATCCACTTGGGTTGCTTTGATC
CTAAATGTAGAAACCAAAGCACTACGCCCTGATAGTGAGAATGGGCCGCT
TGGTAAGACAAGTCTTCGTCAACGGGGGGAGGGAGGGAGGCTTCGCCGAA
GAGGTGCTTGGGAAAGGGTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig742:134035..137855-

>mRNA_P-littoralis_Contig742.42.5 ID=mRNA_P-littoralis_Contig742.42.5|Name=mRNA_P-littoralis_Contig742.42.5|organism=Pylaiella littoralis U1_48|type=CDS|length=537bp|location=Sequence derived from alignment at P-littoralis_Contig742:134035..137855- (Pylaiella littoralis U1_48)
CAGGCTGACGCCATTGACAAATGCATCGTGGAAGTCCTGGCCAAGAACAC
TTCTGTAGACGAGACGATTTCGTGGCAAGCTGCACTTGACTCCACATCAT
GGCCCGACTACGGCGATCAGGATTTCCCAGACCATCTCGCTTTTCATTCG
GCTCGTCCGGCCCTGATTACCCCCCAAGGCCAAAACCGTGCCTGCATGGC
TATTATAGCGCTCGGACCCGGCCTTAAACTGCCGCTGGACCGAGCTGGGG
AATTTGGCTCATCGAAGCTCTTCGACGACGACGGTGATGGCGCCAAGCTC
GACACCCTGAGGAAAGCTTTACAACACCCCCAAGCCGTGTTGAGCATGAC
CGTCTACGACCACCTGACGTTTATGGACGCGGCAGATAAGGGCAGCAGCT
TACACCATGCAGAGGAGATGTCTCGGAAACCAAAGCACTACGCCCTGATA
GTGAGAATGGGCCGCTTGGTAAGACAAGTCTTCGTCAACGGGGGGAGGGA
GGGAGGCTTCGCCGAAGAGGTGCTTGGGAAAGGGTAG
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