mRNA_P-littoralis_Contig742.40.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig742.40.1
Unique NamemRNA_P-littoralis_Contig742.40.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig742.40.1 vs. uniprot
Match: A0A6H5KDP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDP5_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 6.950e-30
Identity = 59/94 (62.77%), Postives = 72/94 (76.60%), Query Frame = 1
Query:   16 FEEMAGLLAVGVSTVKQWEREYRT-GHIALDVTGKYERRWILSLGDGLLVVIKQWIRTNSVKNGEPHMTAETFCEYLNTEILPQVAATATTDYN 294
            FEE A    V  ST ++WE  YRT GHI +D  GK+ERRWILSL +GLLV+++QWIR NS+KNGEP+MTAE F EYLN ++LPQVA T T DY+
Sbjct:   91 FEETAEFFEVASSTPREWELSYRTKGHIQVDQRGKHERRWILSLDEGLLVMVRQWIRVNSIKNGEPNMTAEGFREYLNKDVLPQVADTKTCDYD 184          
BLAST of mRNA_P-littoralis_Contig742.40.1 vs. uniprot
Match: A0A6H5JU25_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU25_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 5.960e-29
Identity = 57/94 (60.64%), Postives = 72/94 (76.60%), Query Frame = 1
Query:   16 FEEMAGLLAVGVSTVKQWEREYRT-GHIALDVTGKYERRWILSLGDGLLVVIKQWIRTNSVKNGEPHMTAETFCEYLNTEILPQVAATATTDYN 294
            FE+ A    V  ST+++WE  YRT GHI +D  GK+ERRWILSL +GLLVV++QW+R NS K GEP+MTA++F EYLNT ILP+VA T T DY+
Sbjct:  302 FEDTAEFFEVADSTLREWELSYRTKGHIQVDQKGKHERRWILSLDEGLLVVVRQWVRVNSTKKGEPNMTADSFREYLNTVILPEVAETKTADYD 395          
BLAST of mRNA_P-littoralis_Contig742.40.1 vs. uniprot
Match: A0A6H5JVH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVH8_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 6.820e-29
Identity = 57/94 (60.64%), Postives = 71/94 (75.53%), Query Frame = 1
Query:   16 FEEMAGLLAVGVSTVKQWEREYRT-GHIALDVTGKYERRWILSLGDGLLVVIKQWIRTNSVKNGEPHMTAETFCEYLNTEILPQVAATATTDYN 294
            FEE A    V  ST ++WE  YRT GHI ++  GK+ERRWILSL +GLLV+++QWIR N +KNGEP+MTAE F EYLN ++LPQVA T T DY+
Sbjct:  317 FEETAEFFEVASSTPREWELSYRTKGHIQVNQRGKHERRWILSLDEGLLVMVRQWIRVNCIKNGEPNMTAEGFREYLNKDVLPQVADTKTCDYD 410          
BLAST of mRNA_P-littoralis_Contig742.40.1 vs. uniprot
Match: A0A6H5KFI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFI8_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 3.730e-27
Identity = 57/94 (60.64%), Postives = 71/94 (75.53%), Query Frame = 1
Query:   16 FEEMAGLLAVGVSTVKQWEREYRT-GHIALDVTGKYERRWILSLGDGLLVVIKQWIRTNSVKNGEPHMTAETFCEYLNTEILPQVAATATTDYN 294
            FEE A  L V V T+KQWE EYRT G I   VTG++ RRWILSL +GLL VI+ +IR N+VKNGEP+MTA+TFC+Y+N  ILP++AAT    Y+
Sbjct:   41 FEESAEFLQVSVGTIKQWELEYRTKGRI---VTGRHARRWILSLDEGLLAVIRFYIRNNAVKNGEPNMTAQTFCDYINKVILPEIAATKANGYD 131          
BLAST of mRNA_P-littoralis_Contig742.40.1 vs. uniprot
Match: A0A6H5JUL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUL0_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 8.360e-27
Identity = 53/84 (63.10%), Postives = 66/84 (78.57%), Query Frame = 1
Query:   16 FEEMAGLLAVGVSTVKQWEREYRT-GHIALDVTGKYERRWILSLGDGLLVVIKQWIRTNSVKNGEPHMTAETFCEYLNTEILPQ 264
            FEE A    V  ST+++WE  YRT GHI +D  GK+ERRWILSL +GLLV+++QWIR NS+KNGEP+MTAE F EYLN ++LPQ
Sbjct:  221 FEETAEFFEVASSTLREWELSYRTKGHIQVDQRGKHERRWILSLDEGLLVMVRQWIRVNSIKNGEPNMTAEGFREYLNKDVLPQ 304          
BLAST of mRNA_P-littoralis_Contig742.40.1 vs. uniprot
Match: A0A6H5K534_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K534_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.620e-23
Identity = 50/84 (59.52%), Postives = 63/84 (75.00%), Query Frame = 1
Query:   16 FEEMAGLLAVGVSTVKQWEREYRT-GHIALDVTGKYERRWILSLGDGLLVVIKQWIRTNSVKNGEPHMTAETFCEYLNTEILPQ 264
            FEE A    V  ST+++WE  YRT GHI +D  GK+ERRWILSL +GLLV+++Q IR NS+KNGE +M AE F EYLN ++LPQ
Sbjct:  295 FEETAEFFEVAFSTLREWELSYRTKGHIQVDQRGKHERRWILSLDEGLLVMVRQSIRVNSIKNGERNMIAEGFREYLNKDVLPQ 378          
BLAST of mRNA_P-littoralis_Contig742.40.1 vs. uniprot
Match: A0A6H5JXQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXQ2_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 6.020e-18
Identity = 38/58 (65.52%), Postives = 50/58 (86.21%), Query Frame = 1
Query:   91 HIALDVTGKYERRWILSLGDGLLVVIKQWIRTNSVKNGEPHMTAETFCEYLNTEILPQ 264
            ++ +D  GK+ER WILSL +GLLV+++QWIR NS+KNGEP+MTAE F EYLNT++LPQ
Sbjct:   24 YLKVDQRGKHERLWILSLDEGLLVMVRQWIRVNSIKNGEPNMTAEGFREYLNTDVLPQ 81          
BLAST of mRNA_P-littoralis_Contig742.40.1 vs. uniprot
Match: A0A6H5JGM4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGM4_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 3.200e-15
Identity = 46/94 (48.94%), Postives = 56/94 (59.57%), Query Frame = 1
Query:   16 FEEMAGLLAVGVSTVKQWEREYRT-GHIALDVTGKYERRWILSLGDGLLVVIKQWIRTNSVKNGEPHMTAETFCEYLNTEILPQVAATATTDYN 294
            FEE A    V  ST+++WE  YRT GHI +D  GK+ERRWILSL +GLLV                 M +E F EYLN ++LPQVA T T DY+
Sbjct:  253 FEETAEFFQVASSTLREWELSYRTKGHIQVDQRGKHERRWILSLDEGLLV-----------------MPSEGFHEYLNKDVLPQVADTKTCDYD 329          
BLAST of mRNA_P-littoralis_Contig742.40.1 vs. uniprot
Match: A0A6H5JFH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFH8_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.330e-8
Identity = 25/40 (62.50%), Postives = 34/40 (85.00%), Query Frame = 1
Query:  148 DGLLVVIKQWIRTNSVKNGEPHMTAETFCEYLNTEILPQV 267
            + LLV+++QWIR N +KNGEP+MTAE F EYLN ++LPQ+
Sbjct:   13 EALLVMVRQWIRVNFIKNGEPNMTAEGFREYLNKDVLPQI 52          
BLAST of mRNA_P-littoralis_Contig742.40.1 vs. uniprot
Match: A0A6H5LAP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAP5_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 5.990e-7
Identity = 28/77 (36.36%), Postives = 49/77 (63.64%), Query Frame = 1
Query:   49 VSTVKQWEREY-RTGHIALDVTGKYERRWILSLGDGLLVVIKQWIRTN-SVKNGEPHMTAETFCEYLNTEILPQVAA 273
            V TV+ WER++   GHI    TG+++RR++L L +G+  + K W+  N  + +G+ + TAE F +++N  I+P + A
Sbjct:  220 VPTVQLWERDFIARGHIKPPDTGRFKRRFLLELDEGISKLAKDWVLENCGILSGQANKTAEDFRKWVNGTIMPMLEA 296          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig742.40.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5KDP5_9PHAE6.950e-3062.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU25_9PHAE5.960e-2960.64Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JVH8_9PHAE6.820e-2960.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFI8_9PHAE3.730e-2760.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUL0_9PHAE8.360e-2763.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K534_9PHAE1.620e-2359.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXQ2_9PHAE6.020e-1865.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGM4_9PHAE3.200e-1548.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFH8_9PHAE1.330e-862.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LAP5_9PHAE5.990e-736.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig742contigP-littoralis_Contig742:111168..111681 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog400682.PAC_15701827
Model size295
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.94e-05
EggNOG OGs2D50F@1|root,2SWWM@2759|Eukaryota
Cds size270
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791537.794445-CDS-P-littoralis_Contig742:111167..1113621680791537.794445-CDS-P-littoralis_Contig742:111167..111362Pylaiella littoralis U1_48CDSP-littoralis_Contig742 111168..111362 -
1680791537.8056524-CDS-P-littoralis_Contig742:111582..1116571680791537.8056524-CDS-P-littoralis_Contig742:111582..111657Pylaiella littoralis U1_48CDSP-littoralis_Contig742 111583..111657 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791537.816405-UTR-P-littoralis_Contig742:111657..1116811680791537.816405-UTR-P-littoralis_Contig742:111657..111681Pylaiella littoralis U1_48UTRP-littoralis_Contig742 111658..111681 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig742.40.1prot_P-littoralis_Contig742.40.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig742 111168..111657 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig742.40.1

>prot_P-littoralis_Contig742.40.1 ID=prot_P-littoralis_Contig742.40.1|Name=mRNA_P-littoralis_Contig742.40.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=90bp
MAGLLAVGVSTVKQWEREYRTGHIALDVTGKYERRWILSLGDGLLVVIKQ
WIRTNSVKNGEPHMTAETFCEYLNTEILPQVAATATTDYN
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mRNA from alignment at P-littoralis_Contig742:111168..111681-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig742.40.1 ID=mRNA_P-littoralis_Contig742.40.1|Name=mRNA_P-littoralis_Contig742.40.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=514bp|location=Sequence derived from alignment at P-littoralis_Contig742:111168..111681- (Pylaiella littoralis U1_48)
TCGGCAACAGTAGTTTTCGAGGAAATGGCGGGTCTTCTGGCAGTGGGTGT AAGCACCGTCAAGCAGTGGGAGAGGGAGTACCGCACGGGCCACATCGCGG TGAGTTCAACTACATACCGGCTGTCTTATTTTTATTTTTAAGTATACATA TCATTTCATGTGTCTCATATCATACAGCAGTCTGACCTCCATGTACATAC TTTGCATATTTACTACTACGCCACCAACCTATATATCGTATACTTCGTAA TATACGAAGTATATTGACACCACACTCCTCCCGTGTTCTTTGTATCGTAC GCCCGCATGTTGAAACCAGTTGGATGTCACCGGCAAGTACGAGCGGCGGT GGATACTGAGCCTGGGCGACGGTCTGCTGGTGGTAATCAAACAGTGGATC CGCACGAACTCTGTCAAGAACGGGGAACCGCACATGACTGCCGAGACCTT CTGCGAATACCTCAACACGGAGATCCTGCCACAAGTAGCCGCTACCGCCA CCACCGACTACAAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig742:111168..111681-

>mRNA_P-littoralis_Contig742.40.1 ID=mRNA_P-littoralis_Contig742.40.1|Name=mRNA_P-littoralis_Contig742.40.1|organism=Pylaiella littoralis U1_48|type=CDS|length=270bp|location=Sequence derived from alignment at P-littoralis_Contig742:111168..111681- (Pylaiella littoralis U1_48)
ATGGCGGGTCTTCTGGCAGTGGGTGTAAGCACCGTCAAGCAGTGGGAGAG
GGAGTACCGCACGGGCCACATCGCGTTGGATGTCACCGGCAAGTACGAGC
GGCGGTGGATACTGAGCCTGGGCGACGGTCTGCTGGTGGTAATCAAACAG
TGGATCCGCACGAACTCTGTCAAGAACGGGGAACCGCACATGACTGCCGA
GACCTTCTGCGAATACCTCAACACGGAGATCCTGCCACAAGTAGCCGCTA
CCGCCACCACCGACTACAAC
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