mRNA_P-littoralis_Contig742.40.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig742.40.1 vs. uniprot
Match: A0A6H5KDP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDP5_9PHAE) HSP 1 Score: 120 bits (302), Expect = 6.950e-30 Identity = 59/94 (62.77%), Postives = 72/94 (76.60%), Query Frame = 1
Query: 16 FEEMAGLLAVGVSTVKQWEREYRT-GHIALDVTGKYERRWILSLGDGLLVVIKQWIRTNSVKNGEPHMTAETFCEYLNTEILPQVAATATTDYN 294
FEE A V ST ++WE YRT GHI +D GK+ERRWILSL +GLLV+++QWIR NS+KNGEP+MTAE F EYLN ++LPQVA T T DY+
Sbjct: 91 FEETAEFFEVASSTPREWELSYRTKGHIQVDQRGKHERRWILSLDEGLLVMVRQWIRVNSIKNGEPNMTAEGFREYLNKDVLPQVADTKTCDYD 184
BLAST of mRNA_P-littoralis_Contig742.40.1 vs. uniprot
Match: A0A6H5JU25_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU25_9PHAE) HSP 1 Score: 118 bits (296), Expect = 5.960e-29 Identity = 57/94 (60.64%), Postives = 72/94 (76.60%), Query Frame = 1
Query: 16 FEEMAGLLAVGVSTVKQWEREYRT-GHIALDVTGKYERRWILSLGDGLLVVIKQWIRTNSVKNGEPHMTAETFCEYLNTEILPQVAATATTDYN 294
FE+ A V ST+++WE YRT GHI +D GK+ERRWILSL +GLLVV++QW+R NS K GEP+MTA++F EYLNT ILP+VA T T DY+
Sbjct: 302 FEDTAEFFEVADSTLREWELSYRTKGHIQVDQKGKHERRWILSLDEGLLVVVRQWVRVNSTKKGEPNMTADSFREYLNTVILPEVAETKTADYD 395
BLAST of mRNA_P-littoralis_Contig742.40.1 vs. uniprot
Match: A0A6H5JVH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVH8_9PHAE) HSP 1 Score: 117 bits (292), Expect = 6.820e-29 Identity = 57/94 (60.64%), Postives = 71/94 (75.53%), Query Frame = 1
Query: 16 FEEMAGLLAVGVSTVKQWEREYRT-GHIALDVTGKYERRWILSLGDGLLVVIKQWIRTNSVKNGEPHMTAETFCEYLNTEILPQVAATATTDYN 294
FEE A V ST ++WE YRT GHI ++ GK+ERRWILSL +GLLV+++QWIR N +KNGEP+MTAE F EYLN ++LPQVA T T DY+
Sbjct: 317 FEETAEFFEVASSTPREWELSYRTKGHIQVNQRGKHERRWILSLDEGLLVMVRQWIRVNCIKNGEPNMTAEGFREYLNKDVLPQVADTKTCDYD 410
BLAST of mRNA_P-littoralis_Contig742.40.1 vs. uniprot
Match: A0A6H5KFI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFI8_9PHAE) HSP 1 Score: 112 bits (279), Expect = 3.730e-27 Identity = 57/94 (60.64%), Postives = 71/94 (75.53%), Query Frame = 1
Query: 16 FEEMAGLLAVGVSTVKQWEREYRT-GHIALDVTGKYERRWILSLGDGLLVVIKQWIRTNSVKNGEPHMTAETFCEYLNTEILPQVAATATTDYN 294
FEE A L V V T+KQWE EYRT G I VTG++ RRWILSL +GLL VI+ +IR N+VKNGEP+MTA+TFC+Y+N ILP++AAT Y+
Sbjct: 41 FEESAEFLQVSVGTIKQWELEYRTKGRI---VTGRHARRWILSLDEGLLAVIRFYIRNNAVKNGEPNMTAQTFCDYINKVILPEIAATKANGYD 131
BLAST of mRNA_P-littoralis_Contig742.40.1 vs. uniprot
Match: A0A6H5JUL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUL0_9PHAE) HSP 1 Score: 112 bits (280), Expect = 8.360e-27 Identity = 53/84 (63.10%), Postives = 66/84 (78.57%), Query Frame = 1
Query: 16 FEEMAGLLAVGVSTVKQWEREYRT-GHIALDVTGKYERRWILSLGDGLLVVIKQWIRTNSVKNGEPHMTAETFCEYLNTEILPQ 264
FEE A V ST+++WE YRT GHI +D GK+ERRWILSL +GLLV+++QWIR NS+KNGEP+MTAE F EYLN ++LPQ
Sbjct: 221 FEETAEFFEVASSTLREWELSYRTKGHIQVDQRGKHERRWILSLDEGLLVMVRQWIRVNSIKNGEPNMTAEGFREYLNKDVLPQ 304
BLAST of mRNA_P-littoralis_Contig742.40.1 vs. uniprot
Match: A0A6H5K534_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K534_9PHAE) HSP 1 Score: 101 bits (252), Expect = 1.620e-23 Identity = 50/84 (59.52%), Postives = 63/84 (75.00%), Query Frame = 1
Query: 16 FEEMAGLLAVGVSTVKQWEREYRT-GHIALDVTGKYERRWILSLGDGLLVVIKQWIRTNSVKNGEPHMTAETFCEYLNTEILPQ 264
FEE A V ST+++WE YRT GHI +D GK+ERRWILSL +GLLV+++Q IR NS+KNGE +M AE F EYLN ++LPQ
Sbjct: 295 FEETAEFFEVAFSTLREWELSYRTKGHIQVDQRGKHERRWILSLDEGLLVMVRQSIRVNSIKNGERNMIAEGFREYLNKDVLPQ 378
BLAST of mRNA_P-littoralis_Contig742.40.1 vs. uniprot
Match: A0A6H5JXQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXQ2_9PHAE) HSP 1 Score: 87.0 bits (214), Expect = 6.020e-18 Identity = 38/58 (65.52%), Postives = 50/58 (86.21%), Query Frame = 1
Query: 91 HIALDVTGKYERRWILSLGDGLLVVIKQWIRTNSVKNGEPHMTAETFCEYLNTEILPQ 264
++ +D GK+ER WILSL +GLLV+++QWIR NS+KNGEP+MTAE F EYLNT++LPQ
Sbjct: 24 YLKVDQRGKHERLWILSLDEGLLVMVRQWIRVNSIKNGEPNMTAEGFREYLNTDVLPQ 81
BLAST of mRNA_P-littoralis_Contig742.40.1 vs. uniprot
Match: A0A6H5JGM4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGM4_9PHAE) HSP 1 Score: 79.3 bits (194), Expect = 3.200e-15 Identity = 46/94 (48.94%), Postives = 56/94 (59.57%), Query Frame = 1
Query: 16 FEEMAGLLAVGVSTVKQWEREYRT-GHIALDVTGKYERRWILSLGDGLLVVIKQWIRTNSVKNGEPHMTAETFCEYLNTEILPQVAATATTDYN 294
FEE A V ST+++WE YRT GHI +D GK+ERRWILSL +GLLV M +E F EYLN ++LPQVA T T DY+
Sbjct: 253 FEETAEFFQVASSTLREWELSYRTKGHIQVDQRGKHERRWILSLDEGLLV-----------------MPSEGFHEYLNKDVLPQVADTKTCDYD 329
BLAST of mRNA_P-littoralis_Contig742.40.1 vs. uniprot
Match: A0A6H5JFH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFH8_9PHAE) HSP 1 Score: 60.5 bits (145), Expect = 1.330e-8 Identity = 25/40 (62.50%), Postives = 34/40 (85.00%), Query Frame = 1
Query: 148 DGLLVVIKQWIRTNSVKNGEPHMTAETFCEYLNTEILPQV 267
+ LLV+++QWIR N +KNGEP+MTAE F EYLN ++LPQ+
Sbjct: 13 EALLVMVRQWIRVNFIKNGEPNMTAEGFREYLNKDVLPQI 52
BLAST of mRNA_P-littoralis_Contig742.40.1 vs. uniprot
Match: A0A6H5LAP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAP5_9PHAE) HSP 1 Score: 55.8 bits (133), Expect = 5.990e-7 Identity = 28/77 (36.36%), Postives = 49/77 (63.64%), Query Frame = 1
Query: 49 VSTVKQWEREY-RTGHIALDVTGKYERRWILSLGDGLLVVIKQWIRTN-SVKNGEPHMTAETFCEYLNTEILPQVAA 273
V TV+ WER++ GHI TG+++RR++L L +G+ + K W+ N + +G+ + TAE F +++N I+P + A
Sbjct: 220 VPTVQLWERDFIARGHIKPPDTGRFKRRFLLELDEGISKLAKDWVLENCGILSGQANKTAEDFRKWVNGTIMPMLEA 296 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig742.40.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig742.40.1 >prot_P-littoralis_Contig742.40.1 ID=prot_P-littoralis_Contig742.40.1|Name=mRNA_P-littoralis_Contig742.40.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=90bp MAGLLAVGVSTVKQWEREYRTGHIALDVTGKYERRWILSLGDGLLVVIKQback to top mRNA from alignment at P-littoralis_Contig742:111168..111681- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig742.40.1 ID=mRNA_P-littoralis_Contig742.40.1|Name=mRNA_P-littoralis_Contig742.40.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=514bp|location=Sequence derived from alignment at P-littoralis_Contig742:111168..111681- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig742:111168..111681- >mRNA_P-littoralis_Contig742.40.1 ID=mRNA_P-littoralis_Contig742.40.1|Name=mRNA_P-littoralis_Contig742.40.1|organism=Pylaiella littoralis U1_48|type=CDS|length=270bp|location=Sequence derived from alignment at P-littoralis_Contig742:111168..111681- (Pylaiella littoralis U1_48)back to top |