prot_P-littoralis_Contig742.20.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig742.20.1
Unique Nameprot_P-littoralis_Contig742.20.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length434
Homology
BLAST of mRNA_P-littoralis_Contig742.20.1 vs. uniprot
Match: D7G4I1_ECTSI (Predicted mitochondrial protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4I1_ECTSI)

HSP 1 Score: 588 bits (1517), Expect = 6.720e-208
Identity = 314/430 (73.02%), Postives = 348/430 (80.93%), Query Frame = 0
Query:   10 WLCAGTLALTVGTTVARGTQDRNTVRGMAFARCGAIASGIGSSSCG---AGSPWTDEVACKTPTMAFRGVRGVVGKSEAAVAAGVVAAAAG----GLPTIWSAFSPSRMGRGGVLVPPLSAVAKTDSDDS-VMDKKPEFYGNSAPGAVAPAGAEKQDEAAVEYAVAGDWDKSLQLVKAMRDSEYVPSVNAYVATIEACRRAHRYDDASSLFSDMNKVCLPEDLIKEYAAEHPNSPGVTQTQKVFCLAMMMRQDHIEPFEETYRAIMGLASKEKLWQVSLLLVEHLRRNGLVPGKFVYDEICSVLFKTGHPEMATMVFEDALADGVEEFNSFAAPKLDLHNHTVSTALAAVRVVLLDMVRKPSTRGFHDATQKLSIITGMGNNSKDGEAVIKPRVMELLTDMGLEPSMMRNNDGCIVLQPDDLQAYVARTS 431
            WL AG LA T+G  +A  + DR+    +AF  CG+I SG  SSS     AG      ++ +  TM+            +++  G  A AAG    GLP+ W+A SPSR GRGG LV PLSA  K DSD+S VMDKK EFYGN APGAVAP GAEKQDEAAVEYAV GDW+KS+QL+KAMRDS++VPSVNAYVATIEACR+A  YD AS+L SDMNKVCLPEDLIK YAA HPN+PGVTQTQKVFCLAMMMRQD IEPFEETYRAIMGLASKEKLWQVSLLLVEHL+RNGLVPGKFVYDEICSVLFKTGHPEMATM+FEDAL D +EE NSFA P+LDLHNHTVSTALAAVRVVLLDM RKP+TR FHD  Q+L IITGMGNNSKDGEAVIKPRVMELL+DMGLEPSMMRNN+GCIVLQP DLQAY+ART+
Sbjct:    3 WLWAGALASTMGNVMASTSLDRSAAETLAFGSCGSIGSGACSSSIRSGRAGPQHVSRISAEPATMSLTTRAPADSGDSSSMRPGGGATAAGTRAAGLPSFWAALSPSRAGRGGALVSPLSA--KADSDESGVMDKKAEFYGNLAPGAVAPEGAEKQDEAAVEYAVGGDWEKSVQLIKAMRDSDFVPSVNAYVATIEACRKAGEYDHASTLLSDMNKVCLPEDLIKAYAAPHPNAPGVTQTQKVFCLAMMMRQDKIEPFEETYRAIMGLASKEKLWQVSLLLVEHLKRNGLVPGKFVYDEICSVLFKTGHPEMATMIFEDALGDKIEELNSFAPPELDLHNHTVSTALAAVRVVLLDMARKPATRTFHDPAQELLIITGMGNNSKDGEAVIKPRVMELLSDMGLEPSMMRNNEGCIVLQPADLQAYMARTA 430          
BLAST of mRNA_P-littoralis_Contig742.20.1 vs. uniprot
Match: A0A835YUL6_9STRA (Smr domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUL6_9STRA)

HSP 1 Score: 225 bits (573), Expect = 5.080e-66
Identity = 126/313 (40.26%), Postives = 183/313 (58.47%), Query Frame = 0
Query:  146 PGAVAPAGAEKQDEAAVEYAVAGDWDKSLQLVKAMRDSEYVPSVNAYVATIEACRRAHRYDDASSLFSDMNKVCLPEDLIKEYAAEHPNSPGVTQTQKVFCLA---------------MMMRQDHIEPFEETYRAIMGLASKEKLWQVSLLLVEHLRRNGLVPGKFVYDEICSVLFKTGHPEMATMVFEDALADGVEEFNSFAAPKLDLHNHTVSTALAAVRVVLLDMVRKPSTRGFHDATQKLSIITGMGNNSKDGEAVIKPRVMELLTDMGLEPS-----------------MMRNNDGCIVLQPDDLQAY 426
            PGA A     K ++A  +YA  G+W K++ L+  MR+    PS+ AY  TI A RR   +D A +L +DM   C+P DL  +YAA  P+    TQTQ VF L                + MR D +EP  +TYRA+MG+ +K++LW +SLLL+EH+R  G+ PGKF+Y+EIC+VL   G  ++A +V+E +L +GV E       K+DLH+ T++TA AAVR  L DM+R+PS R FHD    + IITG+G  S++G AVIKP ++++L      P+                 + ++N GC+ +QP  LQA+
Sbjct:   14 PGAEAAPETAKYNDAIKKYASGGEWAKAVVLIDKMREINLSPSIEAYGDTITALRRGLEFDRADALLADMYDACMPADLFAKYAAADPSDASSTQTQCVFALENXXXXXXXXXXXXLLLCMRTDQLEPDVDTYRAVMGMCTKDRLWHLSLLLLEHMRLRGVQPGKFIYNEICTVLDMEGKHDLAEIVYERSLGEGVFEPWIEDDNKVDLHSFTLNTARAAVRSALTDMLRQPSGRPFHDPAAPMHIITGVGRRSEEGVAVIKPAILDMLNVELQIPAEXXXXXXXXXXXXXXXXVQKHNPGCVEIQPQHLQAW 326          
BLAST of mRNA_P-littoralis_Contig742.20.1 vs. uniprot
Match: D7G4J1_ECTSI (Smr domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4J1_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 1.180e-43
Identity = 96/287 (33.45%), Postives = 155/287 (54.01%), Query Frame = 0
Query:  168 GDWDKSLQLVKAMRDSEYVPSVNAYVATIEACRRAHRYDDASSLFSDMNKVCLPEDLIKEYAAE-HPNSPGVTQTQKVFCLAMMMRQDHIEPFEETYRAIMGLASKEKLWQVSLLLVEHLRRNGLVPGKFVYDEICSVLFKTGHPEMATMVFEDALADGVE-----EFNSFAA-------PK------------LDLHNHTVSTALAAVRVVLLDMVRKPSTRGFHDATQKLSIITGMGNNSKDGEAVIKPRVMELLTDMGLEPSMMRNNDGCIVLQPDDLQAYVAR 429
            GDW+ +L++++ +RD    PS++ ++  I  CRRA  +D AS  + +M +  L +    + A + + +       +    +A M     I+P   TYRA++ L   E  W+ ++LL+EH RR+      F +D + + + K G+ E++TM++E  + D        E N           PK            L+LH+ T   AL  V+V LLD++R+P  R +    ++  IITGMGNNSKD EA+IKP V+ELL D+GL P   + N+GC+ L+P +L+AY+ R
Sbjct:    5 GDWEGALEMLQRIRDKGMKPSMSTHMDVISVCRRALEWDQASKAYREMIEAHLTDHPFDDMACQDYEDESNHVFARACGIVAGMQADAGIKPNNGTYRALLQLCKDEGSWEAAILLLEHSRRSKAKLNLFSFDLLITTVAKQGYKEVSTMLYELGVVDADRALLETEGNXXXXXXXXVEWPKWPLKVGRTGGAILELHDLTQGIALETVQVALLDVIRRPLRRPYWSGDKRWRIITGMGNNSKDREAIIKPAVVELLEDLGLRPEFQQRNEGCVELKPANLEAYIRR 291          
BLAST of mRNA_P-littoralis_Contig742.20.1 vs. uniprot
Match: A0A812T8Y8_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812T8Y8_9DINO)

HSP 1 Score: 72.0 bits (175), Expect = 4.620e-10
Identity = 48/153 (31.37%), Postives = 81/153 (52.94%), Query Frame = 0
Query:  276 WQVSLLLVEHLRRNGLVPGKFVYDEICSVLFKTGHPEMATMVFEDALAD-GVEEFNSFAAPKLDLHNHTVSTALAAVRVVLLDMV--------RKPSTRGFHDATQKLSIITGMGNNSKDGEAVIKPRVMELLT-DMGLEPSMMRNNDGCIVL 418
            WQ +L LVE ++ +GL P   ++D++   +  +G    A  +  +A A  G+      AA  LDLH  TV  A  AVR+ LLD+          K +  G   A   LS++ G+G  SK GEA++ P + ++L+ ++G++      N+GC+++
Sbjct:   82 WQHALRLVEDMQDDGLAPDTGIWDKLLEAMVLSGEMAAAMALCREAKALLGLRP----AAQGLDLHGKTVELAKLAVRIALLDVALALQHGQAAKSAELGL-TAQGSLSLVVGLGRQSKTGEAILGPAIQQMLSQELGVQSHKDPKNEGCLLI 229          
BLAST of mRNA_P-littoralis_Contig742.20.1 vs. uniprot
Match: A0A813KVN0_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813KVN0_POLGL)

HSP 1 Score: 58.2 bits (139), Expect = 2.040e-5
Identity = 56/197 (28.43%), Postives = 82/197 (41.62%), Query Frame = 0
Query:  263 YRAIMGLASKEKLWQVSLLLVEHLRRNGLVPGKFVYDEICSVLFKTGHPEMATMVFEDAL---------------ADGVEEFNSFAAPK-----LDLHNHTVSTALAAVRVVLLDMVR--KP-----------------STRGFHDATQKLSIITGMGNNSKDGEAVIKPRVMELLTDMG----LEPSMMRNNDGCI 416
            + A +    K  LW+ +L + + +  +GL P +  Y      L   G  E A +V+ +A+               A    EF   A        LDLHN  V  A  AV   L +++   +P                 S+    D T+ LSIITG GN+S  GEAV++  V+E+L  +G    LE  +  NN G I
Sbjct:  324 FNATISALEKAHLWERALQVFDDVPAHGLKPDEVTYGSTILALHAGGQQEAARLVYSEAVECSLISPVVRRVSRNAGFPGEFRQDARELHHELVLDLHNLPVVVAELAVEAALDELIALSQPVVHTGSQDEEVSSSLSLSSTVAIDTTESLSIITGRGNHSPGGEAVMREAVLEMLDKLGPRLGLEAHVDPNNPGLI 520          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig742.20.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G4I1_ECTSI6.720e-20873.02Predicted mitochondrial protein n=2 Tax=Ectocarpus... [more]
A0A835YUL6_9STRA5.080e-6640.26Smr domain-containing protein n=1 Tax=Tribonema mi... [more]
D7G4J1_ECTSI1.180e-4333.45Smr domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A812T8Y8_9DINO4.620e-1031.37Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
A0A813KVN0_POLGL2.040e-528.43Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002625Smr domainSMARTSM00463SMR_2coord: 334..421
e-value: 1.2E-8
score: 44.7
IPR002625Smr domainPFAMPF01713Smrcoord: 337..402
e-value: 2.9E-7
score: 30.8
IPR002625Smr domainPROSITEPS50828SMRcoord: 337..421
score: 14.842769
IPR036063Smr domain superfamilyGENE3D3.30.1370.110coord: 336..419
e-value: 4.6E-13
score: 51.2
IPR036063Smr domain superfamilySUPERFAMILY160443SMR domain-likecoord: 336..417
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 158..231
e-value: 1.4E-7
score: 33.0
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 232..334
e-value: 8.2E-6
score: 27.5
NoneNo IPR availablePANTHERPTHR47447OS03G0856100 PROTEINcoord: 167..328

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig742contigP-littoralis_Contig742:28502..45918 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig742.20.1mRNA_P-littoralis_Contig742.20.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig742 28464..47761 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig742.20.1 ID=prot_P-littoralis_Contig742.20.1|Name=mRNA_P-littoralis_Contig742.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=434bp
MMVRMRRLLWLCAGTLALTVGTTVARGTQDRNTVRGMAFARCGAIASGIG
SSSCGAGSPWTDEVACKTPTMAFRGVRGVVGKSEAAVAAGVVAAAAGGLP
TIWSAFSPSRMGRGGVLVPPLSAVAKTDSDDSVMDKKPEFYGNSAPGAVA
PAGAEKQDEAAVEYAVAGDWDKSLQLVKAMRDSEYVPSVNAYVATIEACR
RAHRYDDASSLFSDMNKVCLPEDLIKEYAAEHPNSPGVTQTQKVFCLAMM
MRQDHIEPFEETYRAIMGLASKEKLWQVSLLLVEHLRRNGLVPGKFVYDE
ICSVLFKTGHPEMATMVFEDALADGVEEFNSFAAPKLDLHNHTVSTALAA
VRVVLLDMVRKPSTRGFHDATQKLSIITGMGNNSKDGEAVIKPRVMELLT
DMGLEPSMMRNNDGCIVLQPDDLQAYVARTSPA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002625Smr_dom
IPR036063Smr_dom_sf
IPR011990TPR-like_helical_dom_sf