mRNA_P-littoralis_Contig742.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig742.11.1
Unique NamemRNA_P-littoralis_Contig742.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig742.11.1 vs. uniprot
Match: A0A6H5K7M3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7M3_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 1.260e-19
Identity = 43/79 (54.43%), Postives = 55/79 (69.62%), Query Frame = 1 
Query:   31 RKANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVRRNKVGEVEWMWFVDRHKYSSAQDAIRCEGELTDVVREV 267
            R AN +T  YP+ Q+A+S  R R+LY+IAGW+LS+I  HVRR+ + E+EWMW VDRHKY S + A   E EL  V  EV
Sbjct:  136 RDANVITPTYPRTQVALSIPRRRLLYYIAGWVLSKIVTHVRRHNIQEIEWMWIVDRHKYPSKRAAEENEMELRGVTEEV 214
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BLAST of mRNA_P-littoralis_Contig742.11.1 vs. uniprot
Match: D7FVM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM7_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 7.230e-19
Identity = 41/89 (46.07%), Postives = 64/89 (71.91%), Query Frame = 1 
Query:    1 ELYRLFVQEKRKANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVRRNKVGEVEWMWFVDRHKYSSAQDAIRCEGELTDVVREV 267
            ELY +FV++K++AN + L YP ++  ++  R ++LY+I+GWLLS++W HVRR K+ E EW+ FVD +K +SA  A+  + EL  +V EV
Sbjct:  170 ELYGVFVRKKKEANLIKLSYPDKKTRVTKPRAKVLYYISGWLLSKVWTHVRRQKIEEREWVSFVDLNKSASAGAAVEKDKELEHLVGEV 258
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BLAST of mRNA_P-littoralis_Contig742.11.1 vs. uniprot
Match: D7G5R0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R0_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 1.790e-17
Identity = 40/89 (44.94%), Postives = 61/89 (68.54%), Query Frame = 1 
Query:    1 ELYRLFVQEKRKANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVRRNKVGEVEWMWFVDRHKYSSAQDAIRCEGELTDVVREV 267
            ELY +FV++K++AN + L YP  +  ++  R ++LY+I+GWLLS+ W HVRR K+ E EW+ FVD +K +S   A+  + EL  +V EV
Sbjct:  112 ELYGVFVRKKKEANLIKLSYPDNKTRVTKPRAKVLYYISGWLLSKDWAHVRRQKIEEREWVSFVDLNKSASEGAAVEKDKELEHLVGEV 200
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BLAST of mRNA_P-littoralis_Contig742.11.1 vs. uniprot
Match: A0A6H5KW14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW14_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.280e-15
Identity = 40/90 (44.44%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:    1 ELYRLFVQEKRKANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVRRNKVGEVEWMWFVDRHKYSSAQDAIRCEGELTDVVREVD 270
            ELYR+FV+E+ K+N+V L YP +   +S AR ++LY+IAGWLLS+ W   RR+ + + EW + V  +   S+  AI  +  L D+V EVD
Sbjct:  109 ELYRVFVKEREKSNTVALTYPTEIHKISTARGKVLYYIAGWLLSKAWSRKRRHNIPDQEWDFIVQHNHSPSSAGAIERDPILQDMVGEVD 198
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig742.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K7M3_9PHAE1.260e-1954.43Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FVM7_ECTSI7.230e-1946.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5R0_ECTSI1.790e-1744.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KW14_9PHAE1.280e-1544.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig742contigP-littoralis_Contig742:15540..15809 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size272
Hectar predicted targeting categoryother localisation
Exons1
Cds size270
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791536.9988992-CDS-P-littoralis_Contig742:15539..158091680791536.9988992-CDS-P-littoralis_Contig742:15539..15809Pylaiella littoralis U1_48CDSP-littoralis_Contig742 15540..15809 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig742.11.1prot_P-littoralis_Contig742.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig742 15540..15809 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig742.11.1

>prot_P-littoralis_Contig742.11.1 ID=prot_P-littoralis_Contig742.11.1|Name=mRNA_P-littoralis_Contig742.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=90bp
ELYRLFVQEKRKANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHV
RRNKVGEVEWMWFVDRHKYSSAQDAIRCEGELTDVVREVD
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mRNA from alignment at P-littoralis_Contig742:15540..15809-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig742.11.1 ID=mRNA_P-littoralis_Contig742.11.1|Name=mRNA_P-littoralis_Contig742.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=270bp|location=Sequence derived from alignment at P-littoralis_Contig742:15540..15809- (Pylaiella littoralis U1_48)
GAGCTGTACAGGCTGTTTGTCCAAGAGAAGAGGAAGGCGAACTCGGTCAC
CCTCGAGTACCCGAAGCAACAGATAGCCATGTCGCCAGCGCGCATGCGGA
TCTTGTACTTCATCGCCGGGTGGTTGTTGAGCAGGATTTGGAAACACGTC
CGTAGGAACAAGGTGGGGGAGGTCGAATGGATGTGGTTCGTGGATCGCCA
CAAGTACTCGTCCGCGCAGGACGCCATACGGTGCGAGGGAGAACTGACCG
ATGTCGTGCGTGAGGTAGAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig742:15540..15809-

>mRNA_P-littoralis_Contig742.11.1 ID=mRNA_P-littoralis_Contig742.11.1|Name=mRNA_P-littoralis_Contig742.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=270bp|location=Sequence derived from alignment at P-littoralis_Contig742:15540..15809- (Pylaiella littoralis U1_48)
GAGCTGTACAGGCTGTTTGTCCAAGAGAAGAGGAAGGCGAACTCGGTCAC
CCTCGAGTACCCGAAGCAACAGATAGCCATGTCGCCAGCGCGCATGCGGA
TCTTGTACTTCATCGCCGGGTGGTTGTTGAGCAGGATTTGGAAACACGTC
CGTAGGAACAAGGTGGGGGAGGTCGAATGGATGTGGTTCGTGGATCGCCA
CAAGTACTCGTCCGCGCAGGACGCCATACGGTGCGAGGGAGAACTGACCG
ATGTCGTGCGTGAGGTAGAT
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