mRNA_P-littoralis_Contig119.37.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig119.37.1
Unique NamemRNA_P-littoralis_Contig119.37.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig119.37.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig119contigP-littoralis_Contig119:232826..234848 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size258
Hectar predicted targeting categoryother localisation
Exons3
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789498.2777195-CDS-P-littoralis_Contig119:232825..2329241680789498.2777195-CDS-P-littoralis_Contig119:232825..232924Pylaiella littoralis U1_48CDSP-littoralis_Contig119 232826..232924 +
1680789498.2894177-CDS-P-littoralis_Contig119:233911..2339671680789498.2894177-CDS-P-littoralis_Contig119:233911..233967Pylaiella littoralis U1_48CDSP-littoralis_Contig119 233912..233967 +
1680789498.2997286-CDS-P-littoralis_Contig119:234745..2348481680789498.2997286-CDS-P-littoralis_Contig119:234745..234848Pylaiella littoralis U1_48CDSP-littoralis_Contig119 234746..234848 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig119.37.1prot_P-littoralis_Contig119.37.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig119 232826..234848 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig119.37.1

>prot_P-littoralis_Contig119.37.1 ID=prot_P-littoralis_Contig119.37.1|Name=mRNA_P-littoralis_Contig119.37.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=86bp
VYFLDFEDPGQAFAVQEYTQGEGLVVKRMRRTKKTNEFAAECFRRELDIV
SSYLSPDCHENIVKYLWVNVRVNPSGIIIMEAMEFD
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mRNA from alignment at P-littoralis_Contig119:232826..234848+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig119.37.1 ID=mRNA_P-littoralis_Contig119.37.1|Name=mRNA_P-littoralis_Contig119.37.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2023bp|location=Sequence derived from alignment at P-littoralis_Contig119:232826..234848+ (Pylaiella littoralis U1_48)
GTCTACTTCTTGGATTTCGAGGACCCGGGCCAGGCGTTTGCGGTGCAGGA
GTACACGCAGGGGGAGGGGCTCGTCGTGAAGCGGATGCGCCGCACCAAGG
TGAAGGGCGCAAACGGTGTAGTAAACAACTCCTATTGTCTGCTGGTACTT
GTTGTTTGAGGTGTGTTTTTTTGCGGCAGCAGATTCTTGTATCCGTCCAC
GCCGGACCGCCATCCCTTCTTCAAAGGCGCCCATAGATCCTCTCCGCCTG
CACTTGTCCCGCCGAGTTGTTTTTTGTTCCCCGCATGTTGGATTGATTTA
TTTTTTGCACGTACAATACTCATCAATATTTCAAGGAGATACTACCCCAC
CCAAAATGGTTTTGGTAGCCGCTTGGCTTCAAATGATATCAAAAAATAAA
CGCAGTTGGGTGTTTGAAGGCTCAACCACCCACCTCTATTTATGATCAGA
AATGATATTCCCTACATGTATGATACATCAAAAAGCCTAGAAATTCCTGC
GTCTACGATCACGGCTTTGCTGCAGCACGTTAGTAGTGCCCATTGCCGCA
GCAGATCCTCTTTTTCCCTCTGCCATACTCCCACCCAAGTTCGTTGGGTG
CGGGCAGTGAGTGAGAAAGGGAGAGGCGTTAAGCAGTTTCCTATATTGGT
CAAAACGCTCTGCGGCGTAACTACGAATCGAGACGATGAAAGATCCTGAG
ATGGCGGTGGGTGTCATCTGAGAAAGTCGACCGGGGTGAGCGGAACCAAG
GGCATCGATGGATGCCGTCACCGGGATGGAGGGTTTCTTGGACTAAGACC
GTCTGGCATTGATCAGCAGGAGGACCCGCAAGATCCCCCACGGAGATTAT
TGACTGAGAGCTTAGAGCTCAGGCTTTGGGTCGTGAAAAATGGTTGACAG
CGAGAAGAATCTTGGATTGTTCCCACCATGCGGCAGTTTTTTTTAGATGC
CGAATCTGTCTAACGTTTACGCTATACGTATACGCGCGCGGTTCTACAAG
TAACCATGATCGCCACCCTCGCGTGTCCCCAGCTCCTTTGAACCTCTCTC
TTTGCCCCTTGCGCCTTTCCCCTGACGGATGGCCAGAAAACCAACGAGTT
CGCTGCTGAATGCTTTCGGAGAGAGCTGGACATCGTTTCGAGGTGCGCGT
GCACGAGCTCCTCGCTGATCTCGATCGCTATAGTGTTGTACAGCAGTACT
GTAGAAGCAGCGATATTGGTTCCCTACCTTGCAGGTCTCTACACTTGCGC
TGGCCCCTCACTCCTCTCCGTCTTCTGCTGTATTATACCTCTGATTCCTC
ATGCCATGGTTTCGTGTCACAAAGTAAGTACTGTCAATGCCTATGCGTAG
CACAGGCGTGTCGAAAACTTAGTTCACCCTGCTTGAATACGATCTTCCTC
ATTAGGTCCCTTCCTCAGCGGTCAGCGTTGTGACCGCGGTGTTGGTCGAA
CTTTCATACACATGTCCCGCCCCGTCACTCTCCCCCCCTCCCTCCCTCCC
CCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCC
CCCTCCCTTCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCT
CCGTGCTTTCGCAAAAACAGCTATCTCTCACCGGACTGCCACGAGAATAT
CGTGAAGTACCTGTGGGTCAACGTCCGCGTCAATCCGTCCGGCATCATCA
TCATGGAGGCGATGGAGTTCGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig119:232826..234848+

>mRNA_P-littoralis_Contig119.37.1 ID=mRNA_P-littoralis_Contig119.37.1|Name=mRNA_P-littoralis_Contig119.37.1|organism=Pylaiella littoralis U1_48|type=CDS|length=258bp|location=Sequence derived from alignment at P-littoralis_Contig119:232826..234848+ (Pylaiella littoralis U1_48)
GTCTACTTCTTGGATTTCGAGGACCCGGGCCAGGCGTTTGCGGTGCAGGA
GTACACGCAGGGGGAGGGGCTCGTCGTGAAGCGGATGCGCCGCACCAAGA
AAACCAACGAGTTCGCTGCTGAATGCTTTCGGAGAGAGCTGGACATCGTT
TCGAGCTATCTCTCACCGGACTGCCACGAGAATATCGTGAAGTACCTGTG
GGTCAACGTCCGCGTCAATCCGTCCGGCATCATCATCATGGAGGCGATGG
AGTTCGAC
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