mRNA_P-littoralis_Contig742.46.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig742.46.1
Unique NamemRNA_P-littoralis_Contig742.46.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig742.46.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig742contigP-littoralis_Contig742:130294..131191 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size411
Hectar predicted targeting categorymitochondrion
Exons2
Cds size303
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791536.941516-UTR-P-littoralis_Contig742:130293..1303201680791536.941516-UTR-P-littoralis_Contig742:130293..130320Pylaiella littoralis U1_48UTRP-littoralis_Contig742 130294..130320 -
1680791536.9590087-UTR-P-littoralis_Contig742:130807..1308881680791536.9590087-UTR-P-littoralis_Contig742:130807..130888Pylaiella littoralis U1_48UTRP-littoralis_Contig742 130808..130888 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791536.9707549-CDS-P-littoralis_Contig742:130888..1311911680791536.9707549-CDS-P-littoralis_Contig742:130888..131191Pylaiella littoralis U1_48CDSP-littoralis_Contig742 130889..131191 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig742.46.1prot_P-littoralis_Contig742.46.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig742 130889..131191 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig742.46.1

>prot_P-littoralis_Contig742.46.1 ID=prot_P-littoralis_Contig742.46.1|Name=mRNA_P-littoralis_Contig742.46.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=101bp
MRLVRSHGYNIREQIALRRAPAQLTNSRTLTLHGTCSGATMISDLGHAIQ
PAAFLLSRPALQTWALKCARRRCRLSYDYLLKLFCEQGTTEGSRRTRGNG
*
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mRNA from alignment at P-littoralis_Contig742:130294..131191-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig742.46.1 ID=mRNA_P-littoralis_Contig742.46.1|Name=mRNA_P-littoralis_Contig742.46.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=898bp|location=Sequence derived from alignment at P-littoralis_Contig742:130294..131191- (Pylaiella littoralis U1_48)
ATGAGACTGGTCCGTTCACACGGATATAATATACGTGAACAGATAGCGCT
TCGACGTGCTCCTGCGCAGTTGACAAACAGCCGAACCCTAACCTTACACG
GCACGTGTTCCGGCGCAACGATGATATCCGATCTCGGACACGCGATCCAA
CCTGCGGCCTTTTTACTTTCCCGCCCTGCTCTGCAAACATGGGCTTTGAA
ATGTGCACGTCGACGTTGCCGGCTTTCATATGATTACCTTCTCAAGCTCT
TCTGCGAGCAAGGTACAACCGAAGGCAGTCGAAGAACAAGAGGGAACGGG
TGACGAAGGACTCGTCGGAGAGACATCACAGACCAACGGCACTGAAGCCT
CACCAGCAGCAACCATCGAAACAGCTCAACCCCTGTGAGTATATTTATAC
ATTTTATGCTGCAAAGAGGGTGCAAAGTTCATGTCACATCATTCGACGGT
TCTTTTACTTTGTTTTTGTTCGTAAATAGTTTCAGACATTCAAGCATTGC
ATTAATTCGTAATCACTTTCAGAAATTCAAGCAATATACGCTCCTGCCAA
TCACTGTTCGAGCTCCGCACGTGAGGAACTAGATGTGAAAAACTTCTGCT
GTAAGGAGGCTACAAAGTCCATATCACATCGACGGTAACTTCGGACTTTG
CATAAGTTCATGATAAGCTCGAGATACATTCAAGCATTGTTTCATCATGT
GCGTTTCAGCGCATGTTTGATTTGTGCACGTAACCAACAACGAGAATAAA
AATCTGAATGAAACAGACAAGTCTCTCACACACGTGCAAGCCATCTGACC
CATCACGCACATGTACTGCGCATTGATAATTTTGCGACGTGTCCGCCTCT
CTTTGTTGCGTCTACTAATAGTTTCTGTTTTACGTGGCGTTGGTCAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig742:130294..131191-

>mRNA_P-littoralis_Contig742.46.1 ID=mRNA_P-littoralis_Contig742.46.1|Name=mRNA_P-littoralis_Contig742.46.1|organism=Pylaiella littoralis U1_48|type=CDS|length=303bp|location=Sequence derived from alignment at P-littoralis_Contig742:130294..131191- (Pylaiella littoralis U1_48)
ATGAGACTGGTCCGTTCACACGGATATAATATACGTGAACAGATAGCGCT
TCGACGTGCTCCTGCGCAGTTGACAAACAGCCGAACCCTAACCTTACACG
GCACGTGTTCCGGCGCAACGATGATATCCGATCTCGGACACGCGATCCAA
CCTGCGGCCTTTTTACTTTCCCGCCCTGCTCTGCAAACATGGGCTTTGAA
ATGTGCACGTCGACGTTGCCGGCTTTCATATGATTACCTTCTCAAGCTCT
TCTGCGAGCAAGGTACAACCGAAGGCAGTCGAAGAACAAGAGGGAACGGG
TGA
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