mRNA_P-littoralis_Contig742.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig742.7.1
Unique NamemRNA_P-littoralis_Contig742.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig742.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig742contigP-littoralis_Contig742:13895..14511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size617
Hectar predicted targeting categoryother localisation
Exons1
Cds size588
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791536.8879335-UTR-P-littoralis_Contig742:13894..139061680791536.8879335-UTR-P-littoralis_Contig742:13894..13906Pylaiella littoralis U1_48UTRP-littoralis_Contig742 13895..13906 -
1680791536.9092627-UTR-P-littoralis_Contig742:14494..145111680791536.9092627-UTR-P-littoralis_Contig742:14494..14511Pylaiella littoralis U1_48UTRP-littoralis_Contig742 14495..14511 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791536.8984067-CDS-P-littoralis_Contig742:13906..144941680791536.8984067-CDS-P-littoralis_Contig742:13906..14494Pylaiella littoralis U1_48CDSP-littoralis_Contig742 13907..14494 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig742.7.1prot_P-littoralis_Contig742.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig742 13907..14494 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig742.7.1

>prot_P-littoralis_Contig742.7.1 ID=prot_P-littoralis_Contig742.7.1|Name=mRNA_P-littoralis_Contig742.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=196bp
MVGIAGAMGGALPGRASVGAGCSVGVSMYLSMAVQAYQNAHQQGPVVGGG
GEPARESGVAETKIAGGEDKSVAGDKESAGLDAGSTLRRGDRAGVCEMEE
DFDVDGLGVALEREMEVDVGGAKDDNLDLTDTSTMEWEKEYSQGVKECDD
DFMKQPVVLPGEIEGGSEAGGSTEFHSTGLFFPEKHVGNVETPND*
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mRNA from alignment at P-littoralis_Contig742:13895..14511-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig742.7.1 ID=mRNA_P-littoralis_Contig742.7.1|Name=mRNA_P-littoralis_Contig742.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=617bp|location=Sequence derived from alignment at P-littoralis_Contig742:13895..14511- (Pylaiella littoralis U1_48)
CTGTCTCTGGACTGGGGATGGTCGGCATTGCGGGGGCGATGGGCGGCGCA
CTGCCGGGTCGCGCAAGTGTAGGCGCCGGTTGCAGTGTGGGGGTGAGTAT
GTACCTAAGTATGGCCGTGCAAGCATACCAGAATGCGCACCAGCAAGGAC
CGGTAGTGGGTGGAGGGGGGGAGCCAGCCCGGGAGTCGGGGGTTGCCGAG
ACAAAGATTGCGGGAGGGGAAGATAAGAGTGTTGCGGGCGACAAGGAGAG
TGCAGGTCTAGATGCAGGTAGTACTCTTCGTCGTGGTGATCGAGCAGGGG
TGTGCGAAATGGAAGAGGATTTCGATGTGGATGGGTTAGGAGTTGCGTTG
GAACGGGAGATGGAGGTAGACGTAGGGGGTGCAAAGGATGATAACCTTGA
CTTGACGGATACATCCACGATGGAATGGGAAAAGGAATATAGCCAGGGAG
TCAAGGAGTGCGACGATGACTTCATGAAGCAACCAGTCGTCCTTCCGGGT
GAGATCGAGGGGGGTTCCGAGGCGGGGGGATCTACGGAGTTCCACAGCAC
CGGTTTGTTTTTTCCCGAAAAGCATGTGGGGAACGTCGAAACACCTAACG
ATTAGGCTTGACTTTCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig742:13895..14511-

>mRNA_P-littoralis_Contig742.7.1 ID=mRNA_P-littoralis_Contig742.7.1|Name=mRNA_P-littoralis_Contig742.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=588bp|location=Sequence derived from alignment at P-littoralis_Contig742:13895..14511- (Pylaiella littoralis U1_48)
ATGGTCGGCATTGCGGGGGCGATGGGCGGCGCACTGCCGGGTCGCGCAAG
TGTAGGCGCCGGTTGCAGTGTGGGGGTGAGTATGTACCTAAGTATGGCCG
TGCAAGCATACCAGAATGCGCACCAGCAAGGACCGGTAGTGGGTGGAGGG
GGGGAGCCAGCCCGGGAGTCGGGGGTTGCCGAGACAAAGATTGCGGGAGG
GGAAGATAAGAGTGTTGCGGGCGACAAGGAGAGTGCAGGTCTAGATGCAG
GTAGTACTCTTCGTCGTGGTGATCGAGCAGGGGTGTGCGAAATGGAAGAG
GATTTCGATGTGGATGGGTTAGGAGTTGCGTTGGAACGGGAGATGGAGGT
AGACGTAGGGGGTGCAAAGGATGATAACCTTGACTTGACGGATACATCCA
CGATGGAATGGGAAAAGGAATATAGCCAGGGAGTCAAGGAGTGCGACGAT
GACTTCATGAAGCAACCAGTCGTCCTTCCGGGTGAGATCGAGGGGGGTTC
CGAGGCGGGGGGATCTACGGAGTTCCACAGCACCGGTTTGTTTTTTCCCG
AAAAGCATGTGGGGAACGTCGAAACACCTAACGATTAG
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