mRNA_P-littoralis_Contig742.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig742.12.1
Unique NamemRNA_P-littoralis_Contig742.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig742.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig742contigP-littoralis_Contig742:16536..19674 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size165
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size165
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791536.7117102-CDS-P-littoralis_Contig742:16535..166171680791536.7117102-CDS-P-littoralis_Contig742:16535..16617Pylaiella littoralis U1_48CDSP-littoralis_Contig742 16536..16617 -
1680791536.7276874-CDS-P-littoralis_Contig742:19591..196741680791536.7276874-CDS-P-littoralis_Contig742:19591..19674Pylaiella littoralis U1_48CDSP-littoralis_Contig742 19592..19674 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig742.12.1prot_P-littoralis_Contig742.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig742 16536..19674 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig742.12.1

>prot_P-littoralis_Contig742.12.1 ID=prot_P-littoralis_Contig742.12.1|Name=mRNA_P-littoralis_Contig742.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=55bp
ARRRNLLVHLSIAPVEPRVQGSATEGSRGPPAPGRRPCWMPTQTSCWRTR
KPSFS
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mRNA from alignment at P-littoralis_Contig742:16536..19674-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig742.12.1 ID=mRNA_P-littoralis_Contig742.12.1|Name=mRNA_P-littoralis_Contig742.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3139bp|location=Sequence derived from alignment at P-littoralis_Contig742:16536..19674- (Pylaiella littoralis U1_48)
GCGCGGAGGCGAAACCTCTTGGTTCACCTGAGCATTGCACCAGTGGAGCC
TCGAGTCCAAGGTTCAGCGACGGAAGGTTCGCGGTGAGTGCAAAAATCGT
ATTTTCTAGGGTCTCACAAGCGGCCCCTTCTGACCCCGGCTTCCGACTAC
CCTCTCTAGCACGACAGTGTGCTCCTTCCACAGCGGTGGCAAGTGAAGGC
TCGCCCATCCTAGCCGTTCGCCATACTCATGATCTACTCTCGGGAGCAAT
CCACGTGGGAAACGATCGAGTGTGGGCGAAGATATCAACACATACATGGG
CACATGTCATGTTCGGTTAGGGTTACGCCGCACCAACAGGCGCACGCGGT
GCTGTTTTTTGGTTTTCGCTTGTATTTTTTTTCGAAAATATGGGCGACCT
GGAAGAAGGCCCTGGTGGGTGAAATGCTACTATTAATGTACTATGGTATG
GAGTATGACTACAAATTCGCTATAAACTCGCTACAAGTATACGGCATATA
GTCATACTCCATAGGTGCCACTATGTCCCCTCTTGTGCCATCTTGTGCGT
AAGAGTGGGGGTAGTTGTGAGTGTGGGACCCCGTCGTGCATGCTGGGATT
TTTCACTTTAGGGCGGGCCTTGTATATTTTCTCGTGTATAGCACTGCTGC
ACTAGTCTAGTCTTGCTGCGGCAGTTCAGCATCAGAAATTGCCCGTCCGT
AGGTAGTCGTGCCCTCAAAGTTTGCCAGTTTTTTTCGTGGGTCCAAATCT
CGCAGCAGTACAGGACGTAAGGCGGTTTCTTGTAGGGCCGGATTTTTTTT
TCATTTTTTGATAGAATCCGAACGAACTTTTTCCGGCCAACCGTTGCCGA
TCCGCTGTTCTTATAGGTAAATAGGTGTTCGGATTTTCGGTGATCCCTTG
TTTTGAGTATGTGGTTGAAGAGTCGGCTCCAGAGTGTATCTGCATCGAAG
GACCGCAGGATGGTGTTTTTTGCGCCGAAACCCGTTTGCATCGCCGCTCG
TAACTTTCGAACGAATGAAGACACAGCAATGACGAAGGCATCTTCCGTGA
GCTGTGTATATGATCCCCCTCGTGTCGTGATCGCTTGGGTTAGGATTACA
TCCGTACATTCGCGACGTAGGTTTGCTCATGGCCAACTCATGCGAAACAA
ATTTAGAAAGATGTATCAGCCGGACTGCTGTACAGCAGCATTATTATATA
CTGCTGTATGTATGGCAGTTGTACAGCAGTAGAGAAAGGAGATGACAGCT
CGGGTTCTTTTTTACAACACAACAACATGCCACAGCCACGAGCGATGACC
ATTTTGCGAACATGCCAGTGTAATCCTCACCCAAACGATTACCACACGAG
GGGAGCCATACGCACAGCTCACGGGAGATGGGCTTGTCATCGCTGTGGCT
TCATTCATTGGGGAGTTACGAGCGAAGATGCAACTTGTGGTCTCTCTCAG
AGGAAGCTTTGATACTCCTCCTCCTGCTGCTGCTGCTGTGCTGATGATGC
TGCTGCTACATACGGTTGGTTTTGGTTGCTGATGAACACGATGGAATGAA
CGATGACACGGCAAGCGCACGCAGAAAGACGGTGGACACATGTTATGTAT
GGACAGCAGCAAGCAGTAGTAGCAGCAGCAGCAGGAGCAGCAGCTGCAAC
AACACAGAAAGTAGTAGCAGAGCTCTCCTCCTCTGATGCTCTGTTGTGAT
TAATATCGTTTGTTTTGTCCACACACAAAGAGAGAGATAACTTCACACAT
TTTTTTTTAATATATTTTCCGATCGTATTTTCCGAACCGATCCAGCGTTC
GGAAAATGTCCGATTTTCCGAACGTAATCCGATTAAAAGCTGTTCGGAAA
ATTTTGCTCGAAAAATGTTGTTCGGAAAAAGGTGTTTTCTGAGCCTATAA
GAAGCCTTGACTCTAAAAAAATTCGGAATCTATCAAAAAATGAATAAAAT
ATCCGGCCCTACAAGAAACCGCCTAAGCCCTGAAAAGACTGGCGTGGTAT
TGCTTCATCACGAAGGTATACTCATTCATGCCTAAATATGTACGTCGAAC
GTTAGGTTGTTCAGACATGGAGACGGAAGATGTGCGAGACGCCGCCGAAG
CCGGAGCGGCTGCGGTTGAAGACATGTCGCCTGTTCCGGCGAGACGGATG
TTCGCCGAGGTAAGACAGCGACCCTTGCATGCAAGACCTTGGTTTCTCTG
GCTCAGAATAAGCATGTTGTGCTTTCATCGGCTGGCAATTGGGGCGCTTC
TTCCGCGACATGTCCGCCTACGCACACGTTAAACCCCCCCCCGTCCTTGG
GCCCCCCATCTCTGTACGTTGCCCATACCAGGGGGATGAAGAGTACGGGG
ACGACGAGGATGACGTCGTGGCTATCAACAACTCAGATCGTAAAAGAGGT
GCGTGATTATGTTGTTGTCTGGTATCCCGCCGATGTGTGAGGGGGGGGGG
ACCTCGGGGCGTTCACGACTCTCGCGTTGGCACGTTCGGATCGGGGCGGG
AAGGAGCGTTACTCTAGGATGAGAGAATAAAGTGGAGGTGCCTGTAGAGA
ATCGCGACTGTTCAAAAGTCCGCAATAAAGAAGCGGTACGCTTAACTGCG
AGGGCGCCTGATTTCGTCTCATGAAATTAATGCAGGCGAACCCCACGAAG
AAGACGAGGAGGGGGAGGAGGACGGAGACTGGGAACACGTGGAGAGGTTC
GAGGTCCTCGCTGCGTGACGACGACAACGGACAGGGTCAGCTGGTCAGTT
TCGATTCTGCCACATCCAAAACTCATACTCCCGTAGCCCTCGTCTGTGGC
GATTTATGGGATCGGAGTTCAGGCGTGTTCGTTTGACGAAGGATTGAAAA
AGATTTATCTCGTTAATTCTCTGCCATGTTGTCGGTTCGCCGCACACCGT
CTTCTGTCACATTCGAGCTCATGGTGGTACTCGCAAATAGGGCTCTATAG
TTTCTGTGAGTTCCGGACAACATCTCTCAAATGCCTGCCCTTGGCATGTC
CCACCCCATAAACCAGCTTTGCCTCGTGCTTTCTTTGGCTGTACCTTTCA
ACGGCAGGGGACCGCCAGCTCCCGGACGCAGGCCTTGTTGGATGCCCACG
CAGACAAGCTGCTGGCGGACCCGGAAGCCATCGTTCAGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig742:16536..19674-

>mRNA_P-littoralis_Contig742.12.1 ID=mRNA_P-littoralis_Contig742.12.1|Name=mRNA_P-littoralis_Contig742.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=165bp|location=Sequence derived from alignment at P-littoralis_Contig742:16536..19674- (Pylaiella littoralis U1_48)
GCGCGGAGGCGAAACCTCTTGGTTCACCTGAGCATTGCACCAGTGGAGCC
TCGAGTCCAAGGTTCAGCGACGGAAGGTTCGCGGGGACCGCCAGCTCCCG
GACGCAGGCCTTGTTGGATGCCCACGCAGACAAGCTGCTGGCGGACCCGG
AAGCCATCGTTCAGC
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