mRNA_P-littoralis_Contig741.34.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig741.34.1
Unique NamemRNA_P-littoralis_Contig741.34.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig741.34.1 vs. uniprot
Match: D7FXD3_ECTSI (DDE-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXD3_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 6.990e-25
Identity = 48/102 (47.06%), Postives = 67/102 (65.69%), Query Frame = 1 
Query:    1 PAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTS 303
            P GG+S GVQ+ SWCD  +   W+   +  RP + S   QRP +LVLDDF+CH+++ F  +L   A T+V+ + GGLTP+ QPLDR +NK  KR +R  YT+
Sbjct:  151 PVGGMSFGVQEKSWCDLRECKLWIKHSWTLRPNNGSLVKQRPCILVLDDFKCHKDDTFIAELKRQANTIVIFIPGGLTPLLQPLDRMLNKRMKRLLRGMYTN 252
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BLAST of mRNA_P-littoralis_Contig741.34.1 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 5.080e-23
Identity = 47/102 (46.08%), Postives = 70/102 (68.63%), Query Frame = 1 
Query:    1 PAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTS 303
            PA G+S GVQ+ SW D  + + W++  +  RP + S   QRP +LVLDDF+CH++E +   L   A T+V+++ GGLTP+ QPLDR +NK+ KR +R +YT+
Sbjct:  213 PANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGYIAALKRDANTIVIVIPGGLTPLLQPLDRMLNKQMKRLLRGKYTA 314
[Close]
BLAST of mRNA_P-littoralis_Contig741.34.1 vs. uniprot
Match: A0A6H5JHT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT8_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.070e-22
Identity = 48/102 (47.06%), Postives = 68/102 (66.67%), Query Frame = 1 
Query:    1 PAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTS 303
            PA G+S GVQ+ SW D  + + W++  +  RP + S   QRP +LVLDDF+CH +E F   L   A T+V+ + GGLTP+ QPLDR +NK+ KR +R +YT+
Sbjct:  408 PANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPRILVLDDFKCHNDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTA 509
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BLAST of mRNA_P-littoralis_Contig741.34.1 vs. uniprot
Match: A0A6H5KII4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KII4_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 1.100e-22
Identity = 48/102 (47.06%), Postives = 69/102 (67.65%), Query Frame = 1 
Query:    1 PAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTS 303
            PA G+S GVQ+ SW D  + + W +  +  RP + S   QRP +LVLDDF+CH++E F   L   A T+V+ + GGLTP+ QPLDR +NK+ KR +R++YT+
Sbjct:  147 PANGMSFGVQEKSWSDQRECNGWTSGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQTKRLLRSKYTA 248
[Close]
BLAST of mRNA_P-littoralis_Contig741.34.1 vs. uniprot
Match: A0A6H5L467_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L467_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.780e-22
Identity = 44/98 (44.90%), Postives = 66/98 (67.35%), Query Frame = 1 
Query:   13 ISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTS 303
            +S GVQ+ SW D  + + W++  +  RP + S   QRP +LVLDDF+CH++E F   L + A T+V+ + GGL P+ QPLDR +NK+ KR +R +YT+
Sbjct:    1 MSFGVQEKSWSDQRECNGWISGSWNLRPNNGSIVQQRPCILVLDDFKCHKDESFIAALKNDANTIVIFIPGGLAPLLQPLDRMLNKQMKRLLRGKYTA 98
[Close]
BLAST of mRNA_P-littoralis_Contig741.34.1 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 4.780e-22
Identity = 49/103 (47.57%), Postives = 67/103 (65.05%), Query Frame = 1 
Query:    1 PAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTS 303
            P GG+S GVQ+ SWCD  +   W+   +  RP  GS  R QR  +LVLDDF+CH+++ F   L   A T+V+ + GGLTP+ QPLDR +NK+ KR +R  YT+
Sbjct:  326 PVGGMSFGVQEKSWCDLREYKLWIKDSWKLRPNNGSVVR-QRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTA 427
[Close]
BLAST of mRNA_P-littoralis_Contig741.34.1 vs. uniprot
Match: A0A6H5KRZ1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ1_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 4.820e-22
Identity = 49/103 (47.57%), Postives = 67/103 (65.05%), Query Frame = 1 
Query:    1 PAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTS 303
            P GG+S GVQ+ SWCD  +   W+   +  RP  GS  R QR  +LVLDDF+CH+++ F   L   A T+V+ + GGLTP+ QPLDR +NK+ KR +R  YT+
Sbjct:  333 PVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVR-QRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTA 434
[Close]
BLAST of mRNA_P-littoralis_Contig741.34.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 6.660e-22
Identity = 47/102 (46.08%), Postives = 68/102 (66.67%), Query Frame = 1 
Query:    1 PAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTS 303
            PA G+S GVQ+ SW D  + + W++  +  RP + S   QRP +LVLDDF+CH++E F   L   A T+V+ + G LTP+ QPLDR +NK+ KR +R +YT+
Sbjct:  213 PANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGRLTPLLQPLDRMLNKQMKRLLRRKYTA 314
[Close]
BLAST of mRNA_P-littoralis_Contig741.34.1 vs. uniprot
Match: A0A6H5L4U1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4U1_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.420e-21
Identity = 45/102 (44.12%), Postives = 67/102 (65.69%), Query Frame = 1 
Query:    1 PAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTS 303
            PA G+S GVQ  SW D  + + W++  +  RP + S   QRP +LVLDDF+CH++E F   L   A T+++ + GG+T + QPLDR +NK+ KR +R +YT+
Sbjct:   74 PANGMSFGVQGKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIIIFIPGGMTLLLQPLDRLLNKQMKRLLRGKYTA 175
[Close]
BLAST of mRNA_P-littoralis_Contig741.34.1 vs. uniprot
Match: A0A6H5K8Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y4_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 4.640e-21
Identity = 48/103 (46.60%), Postives = 66/103 (64.08%), Query Frame = 1 
Query:    1 PAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTS 303
            P GG+S GVQ+ SWCD  +   W+   +  RP  GS  R QR  +LVLDDF+CH+++ F   L   A T+V+ + GGL P+ QPLDR +NK+ KR +R  YT+
Sbjct:  367 PVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVR-QRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLIPLFQPLDRMLNKQMKRLLRGMYTA 468
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig741.34.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXD3_ECTSI6.990e-2547.06DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JUK2_9PHAE5.080e-2346.08DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JHT8_9PHAE1.070e-2247.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KII4_9PHAE1.100e-2247.06DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L467_9PHAE1.780e-2244.90DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KE45_9PHAE4.780e-2247.57DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KRZ1_9PHAE4.820e-2247.57DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K6L9_9PHAE6.660e-2246.08DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L4U1_9PHAE1.420e-2144.12DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K8Y4_9PHAE4.640e-2146.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig741contigP-littoralis_Contig741:135213..135517 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FXD3
Preferred namePOGK
PFAMsBrkDBD,DDE_1,HTH_Tnp_Tc5,KRAB
Model size305
Max annot lvl2759|Eukaryota
KEGG koko:K09228
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.15e-25
EggNOG OGsKOG3105@1|root,KOG3105@2759|Eukaryota
DescriptionDNA binding
Cds size303
COG categoryCH
BRITEko00000,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791536.6634426-CDS-P-littoralis_Contig741:135214..1355171680791536.6634426-CDS-P-littoralis_Contig741:135214..135517Pylaiella littoralis U1_48CDSP-littoralis_Contig741 135215..135517 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig741.34.1prot_P-littoralis_Contig741.34.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig741 135215..135517 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig741.34.1

>prot_P-littoralis_Contig741.34.1 ID=prot_P-littoralis_Contig741.34.1|Name=mRNA_P-littoralis_Contig741.34.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=101bp
PAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSRDQRPSVLVLDDFR
CHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYT
S
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mRNA from alignment at P-littoralis_Contig741:135213..135517-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig741.34.1 ID=mRNA_P-littoralis_Contig741.34.1|Name=mRNA_P-littoralis_Contig741.34.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=305bp|location=Sequence derived from alignment at P-littoralis_Contig741:135213..135517- (Pylaiella littoralis U1_48)
CCGGCTGGCGGCATCAGCCTCGGGGTGCAGAAGTCGTCGTGGTGCGACGG
CACCCAGTCCGACGAGTGGGTAACCCAGGACTTCATGCGCCGCCCAGGGT
CTACCTCCAGAGATCAGCGTCCCAGCGTTCTCGTGCTCGACGACTTCAGG
TGCCACCGGGAAGAGAGGTTCCAAAAGAAGCTAATGGACCTGGCCAAGAC
GCTGGTGGTGATGCTTGGTGGAGGGCTGACCCCGGTGTGCCAGCCGCTCG
ACCGGAACATCAACAAGGAGTTCAAGCGAGGTGTTCGGGCCAGGTACACC
AGCTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig741:135213..135517-

>mRNA_P-littoralis_Contig741.34.1 ID=mRNA_P-littoralis_Contig741.34.1|Name=mRNA_P-littoralis_Contig741.34.1|organism=Pylaiella littoralis U1_48|type=CDS|length=303bp|location=Sequence derived from alignment at P-littoralis_Contig741:135213..135517- (Pylaiella littoralis U1_48)
CCGGCTGGCGGCATCAGCCTCGGGGTGCAGAAGTCGTCGTGGTGCGACGG
CACCCAGTCCGACGAGTGGGTAACCCAGGACTTCATGCGCCGCCCAGGGT
CTACCTCCAGAGATCAGCGTCCCAGCGTTCTCGTGCTCGACGACTTCAGG
TGCCACCGGGAAGAGAGGTTCCAAAAGAAGCTAATGGACCTGGCCAAGAC
GCTGGTGGTGATGCTTGGTGGAGGGCTGACCCCGGTGTGCCAGCCGCTCG
ACCGGAACATCAACAAGGAGTTCAAGCGAGGTGTTCGGGCCAGGTACACC
AGC
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