mRNA_P-littoralis_Contig741.32.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig741.32.1
Unique NamemRNA_P-littoralis_Contig741.32.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig741.32.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.170e-13
Identity = 32/51 (62.75%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:    4 IARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLNKHLI 156
            IARL+LG++ATSCQAERNFSAL  ++  LR N  P+KVE+ +F+RLN+HL+
Sbjct:  561 IARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLNRHLV 611
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BLAST of mRNA_P-littoralis_Contig741.32.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.170e-13
Identity = 32/51 (62.75%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:    4 IARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLNKHLI 156
            IARL+LG++ATSCQAERNFSAL  ++  LR N  P+KVE+ +F+RLN+HL+
Sbjct:  756 IARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLNRHLV 806
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BLAST of mRNA_P-littoralis_Contig741.32.1 vs. uniprot
Match: A0A6H5KAS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS2_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 2.580e-12
Identity = 30/51 (58.82%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    4 IARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLNKHLI 156
            IARL+LG++ATSCQAERNFSA   ++  LR    P+K E+T+F+RLN+HL+
Sbjct:  350 IARLYLGIEATSCQAERNFSARSHLIGQLRCKILPSKFERTMFIRLNRHLV 400
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BLAST of mRNA_P-littoralis_Contig741.32.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 2.630e-12
Identity = 35/61 (57.38%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:    1 LIARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLNKHLIPGLGKALRD 183
            LIARL  G+++TSCQAERNFSAL  ++  LR++  P KVE+ +FLRLN+  IP + KAL D
Sbjct:  416 LIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLNRLYIPEV-KALHD 475
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BLAST of mRNA_P-littoralis_Contig741.32.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 2.660e-12
Identity = 35/61 (57.38%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:    1 LIARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLNKHLIPGLGKALRD 183
            LIARL  G+++TSCQAERNFSAL  ++  LR++  P KVE+ +FLRLN+  IP + KAL D
Sbjct:  744 LIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLNRLYIPEV-KALHD 803
[Close]
BLAST of mRNA_P-littoralis_Contig741.32.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 4.930e-12
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    4 IARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLNKHLI 156
            IARLHLG++ATSCQAERNFSAL  ++  LR N    KVE+ + +RLN+HL+
Sbjct:  439 IARLHLGIEATSCQAERNFSALAHLIGTLRCNMLARKVERMMLIRLNRHLL 489
[Close]
BLAST of mRNA_P-littoralis_Contig741.32.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.260e-11
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    4 IARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLNKHLI 156
            IARLHLG++ATSCQAERNFSAL  ++ DL  N    +VE+ + +RLNKHL+
Sbjct:  557 IARLHLGIEATSCQAERNFSALAHLIGDLCCNMLSHRVERMMLVRLNKHLL 607
[Close]
BLAST of mRNA_P-littoralis_Contig741.32.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.720e-11
Identity = 29/51 (56.86%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    4 IARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLNKHLI 156
            IARLHLG++ATSCQAERNFSAL  ++ +LR N  P +VE+ + +RLN+ ++
Sbjct:  453 IARLHLGIEATSCQAERNFSALAHLIGNLRCNMLPHRVERMMLIRLNRRML 503
[Close]
BLAST of mRNA_P-littoralis_Contig741.32.1 vs. uniprot
Match: A0A6H5KJT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT6_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 9.320e-11
Identity = 29/51 (56.86%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    4 IARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLNKHLI 156
            IARL LG++A+SCQAERNFSAL  ++  LR N    KVE+ + +RLN+HL+
Sbjct:  179 IARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIRLNRHLV 229
[Close]
BLAST of mRNA_P-littoralis_Contig741.32.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.540e-10
Identity = 29/51 (56.86%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    4 IARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLNKHLI 156
            IARL LG++A+SCQAERNFSAL  ++  LR N    KVE+ + +RLN+HL+
Sbjct:  744 IARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIRLNRHLV 794
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig741.32.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5JTB8_9PHAE1.170e-1362.75Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGG8_9PHAE1.170e-1362.75Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5KAS2_9PHAE2.580e-1258.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAN7_9PHAE2.630e-1257.38Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE2.660e-1257.38Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KDJ6_9PHAE4.930e-1260.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQI6_9PHAE1.260e-1160.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXV5_9PHAE1.720e-1156.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJT6_9PHAE9.320e-1156.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRT6_9PHAE1.540e-1056.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig741contigP-littoralis_Contig741:131935..132118 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog7029.ACYPI069491-PA
PFAMsDimer_Tnp_hAT
Model size184
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000117
EggNOG OGsKOG1121@1|root,KOG1121@2759|Eukaryota,3AJC9@33154|Opisthokonta,3BV3P@33208|Metazoa,3DF56@33213|Bilateria,4224I@6656|Arthropoda,3SQFR@50557|Insecta
DescriptionhAT family C-terminal dimerisation region
Cds size183
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791536.6278577-CDS-P-littoralis_Contig741:131935..1321181680791536.6278577-CDS-P-littoralis_Contig741:131935..132118Pylaiella littoralis U1_48CDSP-littoralis_Contig741 131936..132118 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig741.32.1prot_P-littoralis_Contig741.32.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig741 131936..132118 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig741.32.1

>prot_P-littoralis_Contig741.32.1 ID=prot_P-littoralis_Contig741.32.1|Name=mRNA_P-littoralis_Contig741.32.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=61bp
LIARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLNKH
LIPGLGKALRD
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mRNA from alignment at P-littoralis_Contig741:131935..132118-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig741.32.1 ID=mRNA_P-littoralis_Contig741.32.1|Name=mRNA_P-littoralis_Contig741.32.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=184bp|location=Sequence derived from alignment at P-littoralis_Contig741:131935..132118- (Pylaiella littoralis U1_48)
TTGATAGCGCGGTTGCACCTAGGCGTTGATGCAACCAGTTGCCAAGCGGA
AAGGAATTTTTCCGCCCTCAAGTTGATCGTTAGCGACCTACGTGCGAACA
CTTCCCCCGCCAAGGTTGAGAAGACTATTTTTCTTAGGCTTAACAAGCAC
CTTATCCCCGGGCTAGGGAAGGCGTTGAGGGATT
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Coding sequence (CDS) from alignment at P-littoralis_Contig741:131935..132118-

>mRNA_P-littoralis_Contig741.32.1 ID=mRNA_P-littoralis_Contig741.32.1|Name=mRNA_P-littoralis_Contig741.32.1|organism=Pylaiella littoralis U1_48|type=CDS|length=183bp|location=Sequence derived from alignment at P-littoralis_Contig741:131935..132118- (Pylaiella littoralis U1_48)
TTGATAGCGCGGTTGCACCTAGGCGTTGATGCAACCAGTTGCCAAGCGGA
AAGGAATTTTTCCGCCCTCAAGTTGATCGTTAGCGACCTACGTGCGAACA
CTTCCCCCGCCAAGGTTGAGAAGACTATTTTTCTTAGGCTTAACAAGCAC
CTTATCCCCGGGCTAGGGAAGGCGTTGAGGGAT
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