mRNA_P-littoralis_Contig741.28.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig741.28.1
Unique NamemRNA_P-littoralis_Contig741.28.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig741.28.1 vs. uniprot
Match: A0A6H5KEH2_9PHAE (RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH2_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 9.270e-15
Identity = 35/60 (58.33%), Postives = 43/60 (71.67%), Query Frame = 2
Query:  221 LSRKAALQLYPIGTHVQKDFGSGLTLNGQVFDYKDRYWRVRYTDNNWEEVTRTELKRLLR 400
            LSR  AL ++PIG   QK+   G+ L GQV+DY   YWRVRYTD NWEE++R EL+RL R
Sbjct: 1822 LSRAQALHVFPIGFTFQKELAGGILLQGQVYDYVSPYWRVRYTDGNWEELSRRELERLAR 1881          
BLAST of mRNA_P-littoralis_Contig741.28.1 vs. uniprot
Match: A0A6H5JMP6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMP6_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 4.920e-13
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 1
Query:    1 DCRRKCLPTGRMSWEYKGRTQAGVEVDWLSEDQILKAKSFTPLQLDGFIALWHLYHP 171
            DCRR    T ++ WEY+G+  +G   DWLSED +L+  SFTPLQLDGF+ALWHLYHP
Sbjct:  746 DCRRSRSRT-QVVWEYRGKLGSGAVSDWLSEDVMLR--SFTPLQLDGFVALWHLYHP 799          
BLAST of mRNA_P-littoralis_Contig741.28.1 vs. uniprot
Match: A0A6H5KBF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF4_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 2.370e-12
Identity = 33/59 (55.93%), Postives = 42/59 (71.19%), Query Frame = 2
Query:  221 LSRKAALQLYPIGTHVQKDFGSGLTLNGQVFDYKDRYWRVRYTDNNWEEVTRTELKRLL 397
            L R  ++Q+   G   QKDFG G  L GQVF ++DRYWRVRY++ NWEE+TR EL+R L
Sbjct: 1068 LQRGLSVQVKMQGFTSQKDFGGGQKLQGQVFGHRDRYWRVRYSNQNWEELTRQELERCL 1126          
BLAST of mRNA_P-littoralis_Contig741.28.1 vs. uniprot
Match: A0A836CCZ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCZ7_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.870e-7
Identity = 28/79 (35.44%), Postives = 47/79 (59.49%), Query Frame = 2
Query:  179 PSEEANHDPRAAIALSRKAALQLYPIGTHVQKDF----GSGLT-LNGQVFDYKDRYWRVRYTDNNWEEVTRTELKRLLR 400
            P +     P+    + R++ALQLYPIGT + ++     G  +T + G V ++   YWR+RY D  WE++TRT++K  ++
Sbjct:   59 PRQRDRPTPKEDAGMRRESALQLYPIGTALVREHRTVVGGPITYVWGAVKNFVSPYWRIRYEDGEWEQMTRTQVKSAIQ 137          
BLAST of mRNA_P-littoralis_Contig741.28.1 vs. uniprot
Match: A0A6H5JAJ3_9PHAE (RT_RNaseH_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAJ3_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 7.800e-7
Identity = 26/60 (43.33%), Postives = 37/60 (61.67%), Query Frame = 2
Query:  224 SRKAALQLYPIGTHVQKDF----GSGLTLNGQVFDYKDRYWRVRYTDNNWEEVTRTELKR 391
            SR+ ALQL+P+GT V ++F    G         FD  D YWRV Y D +WEE+T++E+ +
Sbjct: 1875 SREQALQLFPVGTQVGREFADSDGHLKVFKATAFDCCDPYWRVEYPDGDWEELTKSEMDK 1934          
BLAST of mRNA_P-littoralis_Contig741.28.1 vs. uniprot
Match: A0A6H5K3V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3V4_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 1.450e-6
Identity = 24/60 (40.00%), Postives = 43/60 (71.67%), Query Frame = 2
Query:  224 SRKAALQLYPIGTHVQKDF----GSGLTLNGQVFDYKDRYWRVRYTDNNWEEVTRTELKR 391
            +R+AAL+ +P+ T V ++     G+ +   G+V D+ D YWRV+++D++WEE+TR EL++
Sbjct: 2172 TREAALKEFPLDTEVARELLDSDGNVVVSRGKVCDFYDPYWRVKFSDDDWEELTRRELRQ 2231          
BLAST of mRNA_P-littoralis_Contig741.28.1 vs. uniprot
Match: A0A6H5KNP4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNP4_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 9.140e-6
Identity = 27/59 (45.76%), Postives = 39/59 (66.10%), Query Frame = 2
Query:  224 SRKAALQLYPIGTHVQK---DFGSGLTLN-GQVFDYKDRYWRVRYTDNNWEEVTRTELK 388
            +R+AALQ +P+ T V K   D    + L+ G+V D+ D YWRV ++D +WEE TR EL+
Sbjct: 1627 TREAALQEFPLNTEVAKELRDKDDNIILSRGKVCDFYDPYWRVEFSDGDWEEFTRRELR 1685          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig741.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KEH2_9PHAE9.270e-1558.33RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A6H5JMP6_9PHAE4.920e-1361.40Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KBF4_9PHAE2.370e-1255.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CCZ7_9STRA1.870e-735.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JAJ3_9PHAE7.800e-743.33RT_RNaseH_2 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5K3V4_9PHAE1.450e-640.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNP4_9PHAE9.140e-645.76Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig741contigP-littoralis_Contig741:103974..104395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size422
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size168
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791536.3973107-UTR-P-littoralis_Contig741:103973..1040061680791536.3973107-UTR-P-littoralis_Contig741:103973..104006Pylaiella littoralis U1_48UTRP-littoralis_Contig741 103974..104006 +
1680791536.4208856-UTR-P-littoralis_Contig741:104174..1043951680791536.4208856-UTR-P-littoralis_Contig741:104174..104395Pylaiella littoralis U1_48UTRP-littoralis_Contig741 104175..104395 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791536.4086845-CDS-P-littoralis_Contig741:104006..1041741680791536.4086845-CDS-P-littoralis_Contig741:104006..104174Pylaiella littoralis U1_48CDSP-littoralis_Contig741 104007..104174 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig741.28.1prot_P-littoralis_Contig741.28.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig741 104007..104174 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig741.28.1

>prot_P-littoralis_Contig741.28.1 ID=prot_P-littoralis_Contig741.28.1|Name=mRNA_P-littoralis_Contig741.28.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=56bp
MSWEYKGRTQAGVEVDWLSEDQILKAKSFTPLQLDGFIALWHLYHPNITL
GRGEP*
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mRNA from alignment at P-littoralis_Contig741:103974..104395+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig741.28.1 ID=mRNA_P-littoralis_Contig741.28.1|Name=mRNA_P-littoralis_Contig741.28.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=422bp|location=Sequence derived from alignment at P-littoralis_Contig741:103974..104395+ (Pylaiella littoralis U1_48)
GACTGCCGCAGAAAATGTCTACCGACAGGCCGAATGAGTTGGGAATACAA AGGTCGCACTCAAGCAGGAGTAGAGGTGGACTGGTTATCGGAGGATCAGA TTTTGAAGGCTAAATCGTTCACACCGCTCCAGTTAGATGGTTTCATAGCT CTTTGGCATCTGTACCACCCCAATATCACCCTCGGAAGAGGCGAACCATG ATCCCCGCGCCGCTATCGCCCTCTCTCGCAAAGCCGCCTTGCAATTGTAT CCGATAGGTACCCACGTGCAGAAGGATTTCGGTTCTGGTCTAACCCTGAA CGGACAGGTGTTCGACTATAAAGATCGATACTGGAGGGTGCGCTACACGG ACAACAACTGGGAGGAAGTCACCCGCACCGAACTCAAGCGTTTACTGCGG GCTTGATAGACTTAGGGTTTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig741:103974..104395+

>mRNA_P-littoralis_Contig741.28.1 ID=mRNA_P-littoralis_Contig741.28.1|Name=mRNA_P-littoralis_Contig741.28.1|organism=Pylaiella littoralis U1_48|type=CDS|length=168bp|location=Sequence derived from alignment at P-littoralis_Contig741:103974..104395+ (Pylaiella littoralis U1_48)
ATGAGTTGGGAATACAAAGGTCGCACTCAAGCAGGAGTAGAGGTGGACTG
GTTATCGGAGGATCAGATTTTGAAGGCTAAATCGTTCACACCGCTCCAGT
TAGATGGTTTCATAGCTCTTTGGCATCTGTACCACCCCAATATCACCCTC
GGAAGAGGCGAACCATGA
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