mRNA_P-littoralis_Contig741.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig741.2.1
Unique NamemRNA_P-littoralis_Contig741.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig741.2.1 vs. uniprot
Match: A0A6H5KKK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK7_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 4.250e-7
Identity = 25/56 (44.64%), Postives = 40/56 (71.43%), Query Frame = 3 
Query:   24 SIADLVAMENDLEGLPPSLERDAKSNLLKYLLISKVKEYELHYDDLFYNLQLEGSL 191
            +I +L+ +E ++    PSL+RDAK NLLKYL + +V+EY++ YD L++ L   G+L
Sbjct:   10 NIQELLELEKEIRSKIPSLDRDAKVNLLKYLQVQRVQEYQVEYDRLYFTLSRGGNL 65
[Close]
BLAST of mRNA_P-littoralis_Contig741.2.1 vs. uniprot
Match: D7G3B1_ECTSI (Kinesin light chain-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3B1_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 5.130e-6
Identity = 30/74 (40.54%), Postives = 42/74 (56.76%), Query Frame = 3 
Query:   18 EFSIADLVAMENDLEGL----------------PPSLERDAKSNLLKYLLISKVKEYELHYDDLFYNLQLEGSL 191
            E  I +L+ +EN+L+G                 PPSLERDAK NLLK+L +  V +Y+  YD+L+Y L  +G L
Sbjct:    4 EPGINELLRLENELQGNAPSVWDKLFECVSIREPPSLERDAKVNLLKFLQVKTVDKYKRAYDNLYYELNKQGGL 77
[Close]
BLAST of mRNA_P-littoralis_Contig741.2.1 vs. uniprot
Match: A0A6H5KZG4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZG4_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 8.560e-5
Identity = 27/62 (43.55%), Postives = 37/62 (59.68%), Query Frame = 3 
Query:   18 EFSIADLVAMENDL----EGLPPSLERDAKSNLLKYLLISKVKEYELHYDDLFYNLQLEGSL 191
            +  I DL+ +E +L    +   P + RDAK NLLKYL I  V ++E  YD+L+Y L  EG L
Sbjct:    2 KVDIKDLIGLEAELKKSCDSATPPVVRDAKVNLLKYLQIQTVLQFEAAYDNLYYELGKEGGL 63
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig741.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KKK7_9PHAE4.250e-744.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3B1_ECTSI5.130e-640.54Kinesin light chain-like protein n=1 Tax=Ectocarpu... [more]
A0A6H5KZG4_9PHAE8.560e-543.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig741contigP-littoralis_Contig741:5424..5686 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FY64
PFAMsNB-ARC,TPR_10,TPR_12,TPR_16,TPR_4,TPR_7,TPR_8
Model size265
Max annot lvl2759|Eukaryota
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.13e-10
EggNOG OGsCOG0457@1|root,KOG1840@2759|Eukaryota
Descriptiondetermination of stomach left/right asymmetry
Cds size258
COG categoryC
BRITEko00000,ko00001,ko03019,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791535.6861224-UTR-P-littoralis_Contig741:5423..54281680791535.6861224-UTR-P-littoralis_Contig741:5423..5428Pylaiella littoralis U1_48UTRP-littoralis_Contig741 5424..5428 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791535.7036793-CDS-P-littoralis_Contig741:5428..56861680791535.7036793-CDS-P-littoralis_Contig741:5428..5686Pylaiella littoralis U1_48CDSP-littoralis_Contig741 5429..5686 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig741.2.1prot_P-littoralis_Contig741.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig741 5429..5686 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig741.2.1

>prot_P-littoralis_Contig741.2.1 ID=prot_P-littoralis_Contig741.2.1|Name=mRNA_P-littoralis_Contig741.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=86bp
MNVTEFSIADLVAMENDLEGLPPSLERDAKSNLLKYLLISKVKEYELHYD
DLFYNLQLEGSLVWGIRYSIRIMWNSGDVCGVWVYG
back to top

mRNA from alignment at P-littoralis_Contig741:5424..5686+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig741.2.1 ID=mRNA_P-littoralis_Contig741.2.1|Name=mRNA_P-littoralis_Contig741.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=263bp|location=Sequence derived from alignment at P-littoralis_Contig741:5424..5686+ (Pylaiella littoralis U1_48)
CCAGGATGAACGTCACGGAGTTCTCTATAGCGGACCTAGTGGCGATGGAA
AATGACCTGGAAGGACTGCCCCCTTCCCTGGAGCGGGACGCTAAATCCAA
CCTGCTCAAGTACCTTCTGATCAGCAAGGTGAAGGAGTACGAGCTCCACT
ATGACGACCTATTCTACAACCTGCAGCTGGAGGGAAGCCTTGTTTGGGGT
ATACGGTACTCGATTCGTATTATGTGGAACTCTGGGGATGTGTGTGGTGT
ATGGGTGTATGGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig741:5424..5686+

>mRNA_P-littoralis_Contig741.2.1 ID=mRNA_P-littoralis_Contig741.2.1|Name=mRNA_P-littoralis_Contig741.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=258bp|location=Sequence derived from alignment at P-littoralis_Contig741:5424..5686+ (Pylaiella littoralis U1_48)
ATGAACGTCACGGAGTTCTCTATAGCGGACCTAGTGGCGATGGAAAATGA
CCTGGAAGGACTGCCCCCTTCCCTGGAGCGGGACGCTAAATCCAACCTGC
TCAAGTACCTTCTGATCAGCAAGGTGAAGGAGTACGAGCTCCACTATGAC
GACCTATTCTACAACCTGCAGCTGGAGGGAAGCCTTGTTTGGGGTATACG
GTACTCGATTCGTATTATGTGGAACTCTGGGGATGTGTGTGGTGTATGGG
TGTATGGC
back to top