mRNA_P-littoralis_Contig741.25.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig741.25.1
Unique NamemRNA_P-littoralis_Contig741.25.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig741.25.1 vs. uniprot
Match: A0A6H5J913_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J913_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 7.350e-8
Identity = 27/66 (40.91%), Postives = 39/66 (59.09%), Query Frame = 1 
Query:   16 HFRQDAEEVHPPRCTKYPSYGVAGIKRREFCFGHAKDGMVDVCSKRCNHRGCTKRPSFIVAGTCNK 213
            H +        P CT +PSYG A +K+ EFC  HAK GM++V +++C+H GC K  SF   G+  +
Sbjct:  220 HRQGQRRSCQEPECTTWPSYG-ARLKKAEFCKRHAKQGMINVVTRKCSHPGCIKSASFGKHGSSKR 284
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BLAST of mRNA_P-littoralis_Contig741.25.1 vs. uniprot
Match: D7FI73_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI73_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 1.030e-6
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:   55 CTKYPSYGVAGIKRREFCFGHAKDGMVDVCSKRC 156
            CTK P+YGVAG K+REFC  HA+DGMV+V +KRC
Sbjct:    9 CTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 42
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BLAST of mRNA_P-littoralis_Contig741.25.1 vs. uniprot
Match: A0A6H5JT00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.140e-6
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:   55 CTKYPSYGVAGIKRREFCFGHAKDGMVDVCSKRC 156
            CTK P+YGVAG K+REFC  HA+DGMV+V +KRC
Sbjct:   69 CTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 102
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BLAST of mRNA_P-littoralis_Contig741.25.1 vs. uniprot
Match: D7FIE1_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIE1_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 5.090e-6
Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:   55 CTKYPSYGVAGIKRREFCFGHAKDGMVDVCSKRCNH 162
            CTK+PSYG AG K+ EFC  HAK GMV++ S+RC+H
Sbjct:  114 CTKWPSYGGAGSKKVEFCAQHAKKGMVNLRSRRCDH 149
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BLAST of mRNA_P-littoralis_Contig741.25.1 vs. uniprot
Match: D8LCH9_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCH9_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 1.060e-5
Identity = 26/43 (60.47%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:  130 MVDVCSKRCNHRGCTKRPSFIVAGTCNKTAGFCSRHAEDGMVD 258
            M+ V +K C+H GCT R +F V G+  K A FCSRHAEDGMVD
Sbjct:    1 MIHVRAKTCDHVGCTTRANFGVPGS--KKAEFCSRHAEDGMVD 41
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig741.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5J913_9PHAE7.350e-840.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI73_ECTSI1.030e-670.59EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JT00_9PHAE1.140e-670.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIE1_ECTSI5.090e-663.89EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D8LCH9_ECTSI1.060e-560.47EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig741contigP-littoralis_Contig741:84255..84735 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FHY3
Model size482
Max annot lvl2880.D7FHY3|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.22e-08
EggNOG OGs29ZCP@1|root,2RXW0@2759|Eukaryota
Cds size480
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791535.6109416-CDS-P-littoralis_Contig741:84254..847341680791535.6109416-CDS-P-littoralis_Contig741:84254..84734Pylaiella littoralis U1_48CDSP-littoralis_Contig741 84255..84734 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig741.25.1prot_P-littoralis_Contig741.25.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig741 84255..84734 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig741.25.1

>prot_P-littoralis_Contig741.25.1 ID=prot_P-littoralis_Contig741.25.1|Name=mRNA_P-littoralis_Contig741.25.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=160bp
QRSLLHFRQDAEEVHPPRCTKYPSYGVAGIKRREFCFGHAKDGMVDVCSK
RCNHRGCTKRPSFIVAGTCNKTAGFCSRHAEDGMVDKKCTHRGCTKCPSY
GVAGTKTAELCSGHAKDGMVNVIKKKCTVAAPGGRAMAWQAPRRRNSAQS
GHANDGMVDV
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mRNA from alignment at P-littoralis_Contig741:84255..84735+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig741.25.1 ID=mRNA_P-littoralis_Contig741.25.1|Name=mRNA_P-littoralis_Contig741.25.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=481bp|location=Sequence derived from alignment at P-littoralis_Contig741:84255..84735+ (Pylaiella littoralis U1_48)
CAGAGGTCCCTCCTTCATTTCAGGCAGGATGCCGAGGAAGTGCACCCACC
GCGGTGCACCAAGTATCCGAGCTATGGTGTGGCAGGTATCAAGAGGAGGG
AATTCTGTTTTGGACACGCCAAGGATGGGATGGTGGACGTCTGCAGCAAG
AGGTGCAACCACCGTGGCTGCACCAAGCGACCGAGCTTTATCGTTGCAGG
TACTTGTAACAAGACGGCGGGATTCTGCTCTAGGCACGCCGAGGACGGGA
TGGTGGATAAGAAGTGCACCCACCGTGGCTGCACCAAGTGTCCGAGCTAT
GGTGTGGCAGGTACCAAGACGGCGGAGTTATGCTCTGGACACGCCAAAGA
CGGGATGGTGAACGTTATCAAAAAGAAGTGCACCGTGGCTGCACCAGGCG
GCCGAGCTATGGCGTGGCAGGCACCAAGACGGCGGAATTCTGCTCAGTCA
GGACACGCCAACGACGGGATGGTGGACGTCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig741:84255..84735+

>mRNA_P-littoralis_Contig741.25.1 ID=mRNA_P-littoralis_Contig741.25.1|Name=mRNA_P-littoralis_Contig741.25.1|organism=Pylaiella littoralis U1_48|type=CDS|length=480bp|location=Sequence derived from alignment at P-littoralis_Contig741:84255..84735+ (Pylaiella littoralis U1_48)
CAGAGGTCCCTCCTTCATTTCAGGCAGGATGCCGAGGAAGTGCACCCACC
GCGGTGCACCAAGTATCCGAGCTATGGTGTGGCAGGTATCAAGAGGAGGG
AATTCTGTTTTGGACACGCCAAGGATGGGATGGTGGACGTCTGCAGCAAG
AGGTGCAACCACCGTGGCTGCACCAAGCGACCGAGCTTTATCGTTGCAGG
TACTTGTAACAAGACGGCGGGATTCTGCTCTAGGCACGCCGAGGACGGGA
TGGTGGATAAGAAGTGCACCCACCGTGGCTGCACCAAGTGTCCGAGCTAT
GGTGTGGCAGGTACCAAGACGGCGGAGTTATGCTCTGGACACGCCAAAGA
CGGGATGGTGAACGTTATCAAAAAGAAGTGCACCGTGGCTGCACCAGGCG
GCCGAGCTATGGCGTGGCAGGCACCAAGACGGCGGAATTCTGCTCAGTCA
GGACACGCCAACGACGGGATGGTGGACGTC
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