mRNA_P-littoralis_Contig741.26.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig741.26.1
Unique NamemRNA_P-littoralis_Contig741.26.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig741.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig741contigP-littoralis_Contig741:85329..86605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size625
Hectar predicted targeting categoryother localisation
Exons2
Cds size468
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791535.4477036-CDS-P-littoralis_Contig741:85328..856471680791535.4477036-CDS-P-littoralis_Contig741:85328..85647Pylaiella littoralis U1_48CDSP-littoralis_Contig741 85329..85647 +
1680791535.4591694-CDS-P-littoralis_Contig741:86300..864491680791535.4591694-CDS-P-littoralis_Contig741:86300..86449Pylaiella littoralis U1_48CDSP-littoralis_Contig741 86301..86449 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791535.4727159-UTR-P-littoralis_Contig741:86449..866051680791535.4727159-UTR-P-littoralis_Contig741:86449..86605Pylaiella littoralis U1_48UTRP-littoralis_Contig741 86450..86605 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig741.26.1prot_P-littoralis_Contig741.26.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig741 85329..86449 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig741.26.1

>prot_P-littoralis_Contig741.26.1 ID=prot_P-littoralis_Contig741.26.1|Name=mRNA_P-littoralis_Contig741.26.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=156bp
KSSSAGGSRAETKRTRQAPSHTTATKIPIHERHPPFKNGSISEPDDTAVK
AEVKVFSKVDPRRALAIEAVAGEGATPVEDCSYADSESTVKTEVGIVFPS
KYAVAGGQLEAQEPDERNASVARLYPYGRSTALRTPSLLWAVTGSRPFCP
VVMPT*
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mRNA from alignment at P-littoralis_Contig741:85329..86605+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig741.26.1 ID=mRNA_P-littoralis_Contig741.26.1|Name=mRNA_P-littoralis_Contig741.26.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1277bp|location=Sequence derived from alignment at P-littoralis_Contig741:85329..86605+ (Pylaiella littoralis U1_48)
AAGTCGTCATCCGCCGGCGGGAGCAGGGCAGAAACCAAGCGAACCCGCCA
GGCGCCCTCCCACACAACTGCAACCAAAATACCCATACATGAACGCCATC
CCCCGTTCAAGAACGGTTCGATTTCGGAGCCAGACGACACTGCGGTGAAG
GCGGAAGTGAAGGTCTTTTCAAAAGTGGATCCGAGGAGAGCTTTGGCCAT
TGAAGCAGTCGCAGGAGAAGGGGCCACCCCCGTGGAAGATTGTTCGTATG
CTGATTCAGAATCTACAGTGAAGACGGAAGTGGGAATCGTATTCCCATCG
AAATATGCGGTTGCTGGTGGTGAGTTGTAAATCAGTCATTCCTGCTCCAA
AGCAGCTGAGTCTAACAAGTCGCCCTTATCTCGCCATGAACCCCGCGTTA
CTTGTGGTTTCAACCTCGTGTCATACAGAGGCAGCTCGTTCCTTTCCTTG
TGGTTGTTTTGTTTGGTGTACCAGGAGCTTTCTCAGCTCTGTAGGCGTAA
CCCGTGTGTTGTGTTGCTGTAGAGAGTGAAGCTTGTAGACGACCGACGTG
CGTGTGTTGCTTAGACTACCCTGAAATTATGCTTGGAAACTCGTGCGATT
CGACAGTTTCATGCGTATTCGTTGTTTTTTCGCAGCTTGCTCACACGGTG
TTGTTGGTTTGCTGATTCTGCATCATTTAAGGTATGACCAGGTACTGGTT
TGTTTTTTTCGATGAGAGATTTACGCGCATCACTTTAAGCTTGTTCGTAC
AATAGGTTGGCCCGTGGTTTTATTACTGCTCAAACGTTGTGGCGGTCTTG
GTTGGCACAAGTCATGCTGCTTCCATACAGCACCCCTAGCTGCATCTGCG
AAGGTGACGCAATCGAAAACCTGTACATCACCAGCGTTTCTACCGCCGTA
CCTGACGACCACCGTCATTACTTGACGCTCCTGCTGATATTTCTTGATGT
ATCGATACGTTGCTTGAAACAGGCCAGCTTGAGGCGCAAGAGCCGGACGA
GAGAAACGCGTCTGTAGCACGGTTATATCCTTATGGACGGTCGACAGCGC
TACGGACACCTTCACTGCTCTGGGCGGTAACGGGCAGTCGGCCGTTCTGC
CCGGTCGTCATGCCAACATGATTCCATGCTACAGGAGTACGTTGACACCG
ATTGAGGAAGGTGTCAGCCTTTGGCGTTCAGGGAGTTAAGCCGTGAACGT
GCGTTTGTGGCGGCATCAAACGAAACAGCCGAGCAAATGCTAATACTTCA
GCTTACAGCAAAGTGACAAAAAACTGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig741:85329..86605+

>mRNA_P-littoralis_Contig741.26.1 ID=mRNA_P-littoralis_Contig741.26.1|Name=mRNA_P-littoralis_Contig741.26.1|organism=Pylaiella littoralis U1_48|type=CDS|length=468bp|location=Sequence derived from alignment at P-littoralis_Contig741:85329..86605+ (Pylaiella littoralis U1_48)
AAGTCGTCATCCGCCGGCGGGAGCAGGGCAGAAACCAAGCGAACCCGCCA
GGCGCCCTCCCACACAACTGCAACCAAAATACCCATACATGAACGCCATC
CCCCGTTCAAGAACGGTTCGATTTCGGAGCCAGACGACACTGCGGTGAAG
GCGGAAGTGAAGGTCTTTTCAAAAGTGGATCCGAGGAGAGCTTTGGCCAT
TGAAGCAGTCGCAGGAGAAGGGGCCACCCCCGTGGAAGATTGTTCGTATG
CTGATTCAGAATCTACAGTGAAGACGGAAGTGGGAATCGTATTCCCATCG
AAATATGCGGTTGCTGGTGGCCAGCTTGAGGCGCAAGAGCCGGACGAGAG
AAACGCGTCTGTAGCACGGTTATATCCTTATGGACGGTCGACAGCGCTAC
GGACACCTTCACTGCTCTGGGCGGTAACGGGCAGTCGGCCGTTCTGCCCG
GTCGTCATGCCAACATGA
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