prot_P-littoralis_Contig1189.4.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig1189.4.1
Unique Nameprot_P-littoralis_Contig1189.4.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length128
Homology
BLAST of mRNA_P-littoralis_Contig1189.4.1 vs. uniprot
Match: A0A6H5KQS5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQS5_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 5.730e-28
Identity = 56/123 (45.53%), Postives = 80/123 (65.04%), Query Frame = 0
Query:    6 TQAKLDCRVVMKLPGGCGELSGKYVDLEKALYGLKQSGLLWNDLLVVKLVKKHGMEQCKTDPCVFRLIVKGVVMLILTVHVDDMAVAGPRVEVDKLLVTLNEDFTTVDLGELSFFTGCAVIQD 128
            T A LD  V ++LP GCG+ S   V  E+A+YGLKQSG  W       LV+ +G E+C  DPCVFR++V  VV++I+ ++VDD  VAG   + ++LL +LN+ F T +LGE  +F G A+ +D
Sbjct:   58 THATLDEEVFLRLPAGCGDKSHNIVKAERAIYGLKQSGRQWGYHAADTLVE-NGFERCNADPCVFRMMVDEVVVMIIVINVDDFLVAGSDEDCEELLASLNKKFPTKNLGECEWFDGYAIERD 179          
BLAST of mRNA_P-littoralis_Contig1189.4.1 vs. uniprot
Match: A0A6H5JUN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN0_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.530e-26
Identity = 53/124 (42.74%), Postives = 78/124 (62.90%), Query Frame = 0
Query:    5 FTQAKLDCRVVMKLPGGCGELSGKYVDLEKALYGLKQSGLLWNDLLVVKLVKKHGMEQCKTDPCVFRLIVKGVVMLILTVHVDDMAVAGPRVEVDKLLVTLNEDFTTVDLGELSFFTGCAVIQD 128
            +  AKL   + ++ P GCG +SGK V +E+ALYGLKQSG  W       L++ +G EQC+ DPC+FR +V G V+ ++ ++VDD+ VA    E + L  +LN  F   DLGE +++ GCA+  D
Sbjct:  133 YIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIE-YGYEQCRVDPCIFRKVVDGEVVGLIVINVDDILVAADEGEREDLFASLNNRFPVKDLGECTWYDGCAIAMD 255          
BLAST of mRNA_P-littoralis_Contig1189.4.1 vs. uniprot
Match: A0A6H5K1I0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I0_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 2.050e-26
Identity = 54/124 (43.55%), Postives = 80/124 (64.52%), Query Frame = 0
Query:    5 FTQAKLDCRVVMKLPGGCGELSGKYVDLEKALYGLKQSGLLWNDLLVVKLVKKHGMEQCKTDPCVFRLIVKGVVMLILTVHVDDMAVAGPRVEVDKLLVTLNEDFTTVDLGELSFFTGCAVIQD 128
            +  AKL   + ++ P GCG +SGK V +E+ALYGLKQSG  W       L++ +G EQC+ DPCVFR +V G V+ ++ ++VDD+ VA    E ++L  +LN+ F   DLGE +++ GCA+  D
Sbjct:  476 YIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIE-NGYEQCRVDPCVFRKVVDGEVVGLIVMYVDDILVAADEGEREELFASLNKKFPVKDLGECTWYDGCAIAMD 598          
BLAST of mRNA_P-littoralis_Contig1189.4.1 vs. uniprot
Match: A0A6H5K738_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K738_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 2.180e-26
Identity = 53/128 (41.41%), Postives = 79/128 (61.72%), Query Frame = 0
Query:    1 MSNRFTQAKLDCRVVMKLPGGCGELSGKYVDLEKALYGLKQSGLLWNDLLVVKLVKKHGMEQCKTDPCVFRLIVKGVVMLILTVHVDDMAVAGPRVEVDKLLVTLNEDFTTVDLGELSFFTGCAVIQD 128
            ++  +  AKL   + ++ P GCG +SGK V +E+ALYG KQSG  W       LV+ +G EQC+ DPCVFR +V   V+ ++ ++VDD+ VA    E + L  +LN+ F   DLGE +++ GCA+  D
Sbjct:   46 VNQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGPKQSGREWGFEAADALVE-NGYEQCRVDPCVFRKVVDREVVGLIVIYVDDIFVAADEGEREVLFASLNKKFPVKDLGECTWYDGCAIAMD 172          
BLAST of mRNA_P-littoralis_Contig1189.4.1 vs. uniprot
Match: A0A6H5JXU1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU1_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 2.470e-26
Identity = 52/124 (41.94%), Postives = 79/124 (63.71%), Query Frame = 0
Query:    5 FTQAKLDCRVVMKLPGGCGELSGKYVDLEKALYGLKQSGLLWNDLLVVKLVKKHGMEQCKTDPCVFRLIVKGVVMLILTVHVDDMAVAGPRVEVDKLLVTLNEDFTTVDLGELSFFTGCAVIQD 128
            +  AKL   + +  P GC  +SGK V +E+ALYGLKQSG  W       L++ +G EQC+ DPCVFR +V G V+ ++ ++VDD+ VA    + ++L  +LN+ F   DLGE +++ GCA++ D
Sbjct:   50 YIHAKLREEIYLSFPEGCSSMSGKVVKIERALYGLKQSGREWGFEAADALIE-NGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGDREELFASLNKKFPVKDLGECTWYDGCAIVMD 172          
BLAST of mRNA_P-littoralis_Contig1189.4.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 2.640e-26
Identity = 53/124 (42.74%), Postives = 80/124 (64.52%), Query Frame = 0
Query:    5 FTQAKLDCRVVMKLPGGCGELSGKYVDLEKALYGLKQSGLLWNDLLVVKLVKKHGMEQCKTDPCVFRLIVKGVVMLILTVHVDDMAVAGPRVEVDKLLVTLNEDFTTVDLGELSFFTGCAVIQD 128
            +  AKL   + ++ P GCG +SGK V +E+ALYGLKQSG  W       L++ +G EQC+ DPCVFR +V G V+ ++ ++VDD+ VA    E ++L  +LN+ F   D+GE +++ GCA+  D
Sbjct:  330 YIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIE-NGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDIIVAADEGEREELFASLNKKFPVKDVGECTWYDGCAIAMD 452          
BLAST of mRNA_P-littoralis_Contig1189.4.1 vs. uniprot
Match: A0A6H5J7P7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P7_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 2.660e-26
Identity = 54/124 (43.55%), Postives = 80/124 (64.52%), Query Frame = 0
Query:    5 FTQAKLDCRVVMKLPGGCGELSGKYVDLEKALYGLKQSGLLWNDLLVVKLVKKHGMEQCKTDPCVFRLIVKGVVMLILTVHVDDMAVAGPRVEVDKLLVTLNEDFTTVDLGELSFFTGCAVIQD 128
            +  AKL   + ++ P GCG +SGK V +E+ALYGLKQSG  W       L++ +G EQC+ DPCVFR +V G V+ ++ ++VDD+ VA    E ++L  +LN+ F   DLGE +++ GCA+  D
Sbjct:  261 YIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWWFEAADALIE-NGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKKFPVKDLGECTWYDGCAIAMD 383          
BLAST of mRNA_P-littoralis_Contig1189.4.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 3.810e-26
Identity = 53/124 (42.74%), Postives = 79/124 (63.71%), Query Frame = 0
Query:    5 FTQAKLDCRVVMKLPGGCGELSGKYVDLEKALYGLKQSGLLWNDLLVVKLVKKHGMEQCKTDPCVFRLIVKGVVMLILTVHVDDMAVAGPRVEVDKLLVTLNEDFTTVDLGELSFFTGCAVIQD 128
            +  AKL   + ++ P GCG +SGK V +E+ALYGLKQ G  W       L++ +G EQC+ DPCVFR +V G V+ ++ ++VDD+ VA    E ++L  +LN+ F   DLGE +++ GCA+  D
Sbjct:  617 YIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQGGREWGFEAADALIE-NGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKKFPVKDLGECTWYDGCAIAMD 739          
BLAST of mRNA_P-littoralis_Contig1189.4.1 vs. uniprot
Match: A0A6H5JK49_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK49_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 6.070e-26
Identity = 53/124 (42.74%), Postives = 81/124 (65.32%), Query Frame = 0
Query:    5 FTQAKLDCRVVMKLPGGCGELSGKYVDLEKALYGLKQSGLLWNDLLVVKLVKKHGMEQCKTDPCVFRLIVKGVVMLILTVHVDDMAVAGPRVEVDKLLVTLNEDFTTVDLGELSFFTGCAVIQD 128
            +  AKL   + ++LP GCG +SGK V +E+ALYGLKQSG  W   +   L++ +G EQC+ DPCVFR +V G V+ ++ ++VD++ VA    E ++L  +LN+ F    +GE ++F GCA+  D
Sbjct:  400 YIHAKLKEEIYLRLPEGCGSMSGKVVKVERALYGLKQSGREWGFEVADALIE-NGCEQCRVDPCVFRKVVDGEVVGLIVIYVDEILVAADEGEREELFASLNKKFPVKYMGECTWFDGCAIAMD 522          
BLAST of mRNA_P-littoralis_Contig1189.4.1 vs. uniprot
Match: A0A6H5JFZ2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFZ2_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.530e-25
Identity = 55/124 (44.35%), Postives = 80/124 (64.52%), Query Frame = 0
Query:    5 FTQAKLDCRVVMKLPGGCGELSGKYVDLEKALYGLKQSGLLWNDLLVVKLVKKHGMEQCKTDPCVFRLIVKGVVMLILTVHVDDMAVAGPRVEVDKLLVTLNEDFTTVDLGELSFFTGCAVIQD 128
            +  AKL   + ++ P GCG +SGK V +E+ALYGLKQSG  W       L++ +G EQC+ DPCVFR +V G V+ ++ ++VDD+ VA    E  +LL +LN+ F   DLGE +++ GCA+  D
Sbjct:  353 YINAKLK-EIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIE-NGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADGGERGELLASLNKKFPVKDLGECTWYDGCAIAMD 474          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1189.4.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQS5_9PHAE5.730e-2845.53Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JUN0_9PHAE1.530e-2642.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1I0_9PHAE2.050e-2643.55Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K738_9PHAE2.180e-2641.41Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JXU1_9PHAE2.470e-2641.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KF18_9PHAE2.640e-2642.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J7P7_9PHAE2.660e-2643.55Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JI74_9PHAE3.810e-2642.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JK49_9PHAE6.070e-2642.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JFZ2_9PHAE1.530e-2544.35Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 4..128
e-value: 1.7E-16
score: 60.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1189contigP-littoralis_Contig1189:18404..18787 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1189.4.1mRNA_P-littoralis_Contig1189.4.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig1189 18404..18941 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig1189.4.1 ID=prot_P-littoralis_Contig1189.4.1|Name=mRNA_P-littoralis_Contig1189.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=128bp
MSNRFTQAKLDCRVVMKLPGGCGELSGKYVDLEKALYGLKQSGLLWNDLL
VVKLVKKHGMEQCKTDPCVFRLIVKGVVMLILTVHVDDMAVAGPRVEVDK
LLVTLNEDFTTVDLGELSFFTGCAVIQD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2