mRNA_P-littoralis_Contig740.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig740.10.1
Unique NamemRNA_P-littoralis_Contig740.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig740.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig740contigP-littoralis_Contig740:66808..67577 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size171
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size171
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791534.619715-CDS-P-littoralis_Contig740:66807..668891680791534.619715-CDS-P-littoralis_Contig740:66807..66889Pylaiella littoralis U1_48CDSP-littoralis_Contig740 66808..66889 -
1680791534.6327553-CDS-P-littoralis_Contig740:67488..675771680791534.6327553-CDS-P-littoralis_Contig740:67488..67577Pylaiella littoralis U1_48CDSP-littoralis_Contig740 67489..67577 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig740.10.1prot_P-littoralis_Contig740.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig740 66808..67577 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig740.10.1

>prot_P-littoralis_Contig740.10.1 ID=prot_P-littoralis_Contig740.10.1|Name=mRNA_P-littoralis_Contig740.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=57bp
MSTPRYGPPRTMGVDQGRPELPGVPSYMVRKLGSEGRQACSGVTLDRPTL
HPTHDTH
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mRNA from alignment at P-littoralis_Contig740:66808..67577-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig740.10.1 ID=mRNA_P-littoralis_Contig740.10.1|Name=mRNA_P-littoralis_Contig740.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=770bp|location=Sequence derived from alignment at P-littoralis_Contig740:66808..67577- (Pylaiella littoralis U1_48)
ATGAGCACTCCACGGTATGGGCCGCCACGGACGATGGGCGTGGATCAAGG
GAGGCCAGAACTACCAGGGGTGCCATCCTACATGGTGAGGTACCGGTGCG
CGCTGCGCGTTGCTGCTGTGTGTGGTGCTGTTTGAAAAAAAAAATAAAAA
ATTGCGGCAGATTTTTTTTTTTCGCCGCAAAGAAGATAAGAAAAGTATAT
ACGTTGAATAACATGCCCCAACAGAGCTGCCGGGGTTTTTCAGCTGCGAT
TCCTCTTGTTGTTGTGAGGTAGGGAGTGCATCAACCGGCCCTCCTCCAAC
CGCTCTTTGGACAGATTGAATGTTGGTGGCAGACTGTGATATAGAGCAGA
CCAAAACTATTTTTTTCCCCCCTTTCAGAACTGCGCTGAATAAAATTTTA
TTTATTGATGTAAATCAGTGGCGCTTTTATCGTCACCACTCAAGCGATAT
ATAAAAGGCACCATGCAGACTAACTATTAGGTGTTTTTTATTTTCAATTA
AGTTATTTATTGTTTGGGGGGGACAATATATATATGTGTAGGTGTTTTTT
TTTAAATTATTTAATTAATTTTTGGTTTTGGGCAGGGGATATCTTGTGTG
TTTATGAAGTACCATCTCATACAATTTGACGAATGACATCGAACACCTGC
TGCTGCTGCTATGTTGCATGTTCGTTGCAACCCTCCAGGAAGCTCGGATC
AGAAGGACGGCAAGCCTGCAGCGGGGTCACGCTCGATCGCCCAACACTTC
ATCCAACCCATGACACCCAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig740:66808..67577-

>mRNA_P-littoralis_Contig740.10.1 ID=mRNA_P-littoralis_Contig740.10.1|Name=mRNA_P-littoralis_Contig740.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=171bp|location=Sequence derived from alignment at P-littoralis_Contig740:66808..67577- (Pylaiella littoralis U1_48)
ATGAGCACTCCACGGTATGGGCCGCCACGGACGATGGGCGTGGATCAAGG
GAGGCCAGAACTACCAGGGGTGCCATCCTACATGGTGAGGAAGCTCGGAT
CAGAAGGACGGCAAGCCTGCAGCGGGGTCACGCTCGATCGCCCAACACTT
CATCCAACCCATGACACCCAC
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