mRNA_P-littoralis_Contig74.165.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig74.165.1 vs. uniprot
Match: A0A6H5JD90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD90_9PHAE) HSP 1 Score: 241 bits (614), Expect = 1.310e-61 Identity = 242/620 (39.03%), Postives = 300/620 (48.39%), Query Frame = 1
Query: 268 PLREPAGPTDDGPPRRPSSNVIGTANTPVFVYSGKLKEAGSGASARGGTPTPSTKRGFSGRKIIRHGESNEYEHGELPLSE--GMEVGADDIPGSVRSAGGVGSSGKFAFDRLKSRRPVESDVPERRGVDPLGSGGGSFF---SMAFWDSARHFGDEPPDG-----ERVDGSSVKHTRGLPRLPWGERGLAEVDIPRRRSVDTSGHMGVA-----SESEVPDADSDSHLP---HLLDGSKGKQRLGAALSRFPVGFRNNPTESSLPRRRSSHAPDWNLSGEGSGGSPDTSTREGEHQDSSSPD---GGNVGDVATGKGGDLAGLDV-----SAGHTISKGGGVGGWAVKSRAPVVVDLPRRRSGYSVDSSAQSMHDASVAAGSLQQVVADNSRAKGNESVG---DERGAPNG-------SGIQGSSVLAELAGLNRGPAESGLPRRRRSSDISLPKGGVVLPMDDVSSRGGDGTSGVVVNNDQAVSESSASASRRL--SCRVSARGGWRSGLNSRTPVVVDLPRRSSGYSFDGSGRSVGGLDVSGGESFRLQQGARAGDGDTEDTKSDADAGLSSARLGSGGVPSVSADRRSVFPALAGQKRAPIESDLPRRRPSKYLTA 2013
P R GPT+ + V+ NT +FV S + S A A GG S R IIR GESNE+E+ E VG+D I G+ R+ G K AF L+SR PVE DVP RRGV L + + + DE DG E +D S + +GL ++PWG RG E+D+ S H+ A + SE ADSD H GS+ K G AL R + RN PTESSLPRRRS A W+ + S S S +E E+ ++S GG D+ T + DL +DV S+ S GG G W +K++APV DLPRR SGYS DSS + A GS Q++ G+ VG D GA G SG + +SV A L G R P ES PRRR S + SL VVLP +DVS G V ++ AVS ASRR S +VS W +G TPV DLPRRSS YS D S G LDVSGG +F Q+ A + +SDA G+ SAR S G P S R+SVFP L G K AP+ESDLPRRR S+Y A
Sbjct: 2309 PCRHDVGPTNISSAKE---RVLRFQNT-LFVSSSDIASESSSA-ANGG----------SSRSIIRRGESNEHENYAPSPKETRATGVGSDQISGAGRAGGDRKGEPKLAF--LRSRPPVEKDVPRRRGVAGLALAAATTTVPSATVPGSESTTIDDEKLDGDGGADESMDSSGRGNPKGLLQVPWGARGSTEIDV--------SEHILPALCDSPAASEFLSADSDKQRTGAGHHHGGSRRK--FGGALPRLSLTSRNIPTESSLPRRRSVDA--WHHPVDESMNSLRVSIQEEENGGATSIGAGIGGGTSDMNTEEEDDLPRVDVTTREGSSNRGESGKGGSGLWGLKNKAPVAYDLPRRGSGYSADSSGR-------ADGSRGQILPQREET-GDVWVGNDPDSAGATAGEGRERSSSGARSTSVFAGLMGQARRPLESDRPRRRESMETSLVSERVVLPGEDVSKASGASAEDVDSSSGFAVS-----ASRRAGGSNKVSRELRWPAGAKGTTPVASDLPRRSSSYSADTSTHFTGELDVSGGRAF--QEEAHNAERIAFGIRSDAKPGVDSARQDSRGNPVASGGRKSVFPTLVGYKHAPVESDLPRRRASEYSGA 2884
BLAST of mRNA_P-littoralis_Contig74.165.1 vs. uniprot
Match: D8LLG6_ECTSI (Mucin-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG6_ECTSI) HSP 1 Score: 239 bits (610), Expect = 4.100e-61 Identity = 227/573 (39.62%), Postives = 279/573 (48.69%), Query Frame = 1
Query: 424 STKRGFSGRKIIRHGESNEYE-HGELPLSEGME-VGADDIPGSVRSAGGVGSSGKFAFDRLKSRRPVESDVPERRGVDPLGSGGGSFF---------SMAFWDSARHFGDEPPDGERVDGSSVKHTRGLPRLPWGERGLAEVDIPRRRSVDTSGHM-GVASESEVPDADSD---SHLPHLLDGSKGKQRLGAALSRFPVGFRNNPTESSLPRRRSSHAPDWNLSGEGSGGSPDTSTREGEHQDSSSPDGGNVG---DVATGKGGDLAGLDVSAGHTISKGGGVGG-----WAVKSRAPVVVDLPRRRSGYSVDSSAQSMHDASVAAGSLQQVVA------------DNSRAKGNESVGDERGAPNGSGIQGSSVLAELAGLNRGPAESGLPRRRRSSDISLPKGGVVLPMDDVSSRGG------DGTSGVVVNNDQAVSESSASASRRL--SCRVSARGGWRSGLNSRTPVVVDLPRRSSGYSFDGSGRSVGGLDVSGGESFRLQQGARAGDGDTEDTKSDADAGLSSARLGSGGVPSVSADRRSVFPALAGQKRAPIESDLPRRRPSKYLTA 2013
S +G S R IIR GESNE+E + P G VG+D I G+ R GG K AF L+SR PVE DVP RRGV L + D + GDE D E +D S + +G +LP G RG E+D+ S D + + SE ADSD + H GS+ K G A R + RNNPTESS PRRRS+ A WN + S S S +E E +S GN G D+ T + DL +DV+A S G G W +K++APV DLPRR SGYS DSS + A GS Q + D G ER SG + +SV A L G P ES PRRR S + SL +G VLP +D+S G D +SG VV SASRR S VS GW +G +TPV DLPRR+SGYS D S SVG LDVSGG +F+ ++ D +SDA G+ SAR GS G P S R+S+FP L G AP+ESDLPRRR S+Y A
Sbjct: 2306 SAAKGGSSRSIIRRGESNEHENYTPSPKETGATGVGSDQISGAGRVGGGRKGEPKLAF--LRSRPPVEKDVPRRRGVAGLALAAATNAVPSATVPESESTTIDDEKLDGDEGAD-ESMDSSGRGNPKGPFQLPRGARGSTEIDV----SEDILPAICDSPAASEFLSADSDKQQTRAGHHHGGSRRK--FGGAFPRLSLTSRNNPTESSFPRRRSADA--WNHPVDESMNSLRASIQEEEDGGASGIGAGNGGGKSDMNTEEEDDLPRVDVTASEENSNRGESGKGESGLWGLKNKAPVAYDLPRRSSGYSADSSGR-------ADGSRGQFLPWREETGDVWVGNDPDSTGATACEGRERSI---SGARSTSVFAGLMGQVARPLESDRPRRRGSMETSLVRGRAVLPGEDLSKSSGASAEDVDSSSGFVV-----------SASRRAGGSNNVSRDLGWPAGSKGKTPVASDLPRRTSGYSADTSAHSVGELDVSGGRAFQEEE--HTADRIAFGIRSDAKPGVDSARQGSRGNPVASGGRKSLFPTLVGYNHAPVESDLPRRRASEYSGA 2844
BLAST of mRNA_P-littoralis_Contig74.165.1 vs. uniprot
Match: D7FWS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWS4_ECTSI) HSP 1 Score: 177 bits (448), Expect = 2.320e-41 Identity = 94/134 (70.15%), Postives = 104/134 (77.61%), Query Frame = 1
Query: 1 ALVIPVYFDAVTIVMGAILNRLRKLMDKARQEEEDEEREARAYIRSFTRRQWCGTWCAMLRHNLFACVRDTSEGVRKPRSSAAARSGPYP---LREPAGPTDDG--PPRRPSSNVIGTANTPVFVYSGKLKEAG 387
ALVIPVY DAVTIVMGAI NR+RK + K E DEEREAR YIRS+TRRQWCGTWC MLRHN+FAC RDTSEGVRKPR + AARSGPYP + AG T+DG PPRRPS N +GTANTPV V S + + AG
Sbjct: 1637 ALVIPVYLDAVTIVMGAIRNRIRKALGKTGHELTDEEREARHYIRSYTRRQWCGTWCTMLRHNVFACARDTSEGVRKPRFTTAARSGPYPPLDRSKQAGGTEDGGGPPRRPSCNAVGTANTPVIVISDRKEAAG 1770
BLAST of mRNA_P-littoralis_Contig74.165.1 vs. uniprot
Match: A0A6H5JR60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR60_9PHAE) HSP 1 Score: 101 bits (252), Expect = 2.730e-18 Identity = 46/56 (82.14%), Postives = 50/56 (89.29%), Query Frame = 1
Query: 103 DEEREARAYIRSFTRRQWCGTWCAMLRHNLFACVRDTSEGVRKPRSSAAARSGPYP 270
DEEREAR YIRS+TRRQWCGTWC +L HN+FAC RDTSEGVRKPR + AARSGPYP
Sbjct: 657 DEEREARDYIRSYTRRQWCGTWCTVLGHNVFACARDTSEGVRKPRFTTAARSGPYP 712
BLAST of mRNA_P-littoralis_Contig74.165.1 vs. uniprot
Match: D7G1L9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L9_ECTSI) HSP 1 Score: 73.2 bits (178), Expect = 1.640e-9 Identity = 43/93 (46.24%), Postives = 58/93 (62.37%), Query Frame = 1
Query: 1 ALVIPVYFDAVTIVMGAILNRLRKLM-----DKARQEEEDEEREARAYIRSFTRRQWCGTWCAMLRHNLFACVRDTSEGVRKPRSSAAARSGP 264
AL+IP+Y DA T+++GAI ++R L D R EEE +E R +IR + R W TWC ML N+ ACV DT+ G R+ +SAA R+GP
Sbjct: 504 ALIIPMYIDASTVILGAIREKIRSLTKSNTCDDGRTEEEA--KEERKFIRGYIFRAWGPTWCRMLGSNVLACVADTTRGTRRVNTSAA-RTGP 593
BLAST of mRNA_P-littoralis_Contig74.165.1 vs. uniprot
Match: A0A6H5JZX1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZX1_9PHAE) HSP 1 Score: 67.8 bits (164), Expect = 1.200e-7 Identity = 42/96 (43.75%), Postives = 56/96 (58.33%), Query Frame = 1
Query: 1 ALVIPVYFDAVTIVMGAILNRLRKLMDKARQEEEDEEREARAYIRSFTRRQWCGTWCAMLRHNLFACVRDTSEGVRKPRSSA------AARSGPYP 270
ALV+P+Y D ++G + +R ++ KAR E ++ER R +I T R W TW M+ +NLFACVRDT EG+R P S A R GPYP
Sbjct: 609 ALVVPLYLDTCVSLLGVVRSRRGRV--KAR--ENEDERAEREFIIRRTLRLWAPTWFRMVGNNLFACVRDTREGIRDPTGSRLQARLRAGRIGPYP 700
BLAST of mRNA_P-littoralis_Contig74.165.1 vs. uniprot
Match: A0A6H5JTJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTJ3_9PHAE) HSP 1 Score: 65.1 bits (157), Expect = 7.850e-7 Identity = 160/616 (25.97%), Postives = 224/616 (36.36%), Query Frame = 1
Query: 4 LVIPVYFDAVTIVMGAILNRLR--KLMDKARQEEEDEEREARAYIRSFTRRQWCGTWCAMLRHNLFACVRDTSEGVRKPRSSA------AARSGPYP------LREPA---------------------------------------GPTDDGPPRRPSSNVIGTANTPVFVYSGKLKEAGSGASARGGTPTPSTKRGFSGRKIIRHGESN-EYEHGELPLSEGMEVGADDIPGSVRSAGGVGSSGKFAFDRLKSRRP-------VESDVPERRGVDPLGSGGGSFFSMAFWDSARHFGDEPPDGERVDGSSVKHTRGLPRLPWGERGL-AEVDIPRRR---------SVDTSGHMGVASESEVPDADSD-SHLPHLLDGSKGKQRLGAALSRFPVGFRNNPTESSLPRRR--SSHAPDWNLSGEGSGGSPDTSTREGEHQDSSSPDGGNVGDVATGKGGDLAGLDVSAGHTISKGGGVGGWAVKSRAPVVVDLPRRRSGYSV----------DSSAQSMH--DASVAAGSLQQVVADNSRAKGNESVGDERGAPNGSGIQGSSVLAELAGLNRGPAESGLPRRRRSSDI---------SLPKGGVVLPMDDVSSR 1566
LV+P+Y D + +V GAI NR K D A Q E R +I T R W TW M+ N+FACVRDT EG+R P S A + GPYP LR P GP ++ P R SS + + V ++EAG +S R + S +R SG E N + H + + + V G + V + + R +E D+P RR +G G D A H ++ D + + +G R RG A D PRRR SVD H+ VP+ D+D H + G+ R R P E SLPRRR SS P +L S D + R+ P+ GN D+ A + G + GW + + DLP RRSGYS D S +MH D ++ S+QQ + K E V D+ P + S+ A + ++ G + +P+ D+ S P GG V +D+SSR
Sbjct: 560 LVVPLYVDTLLLVWGAIRNRRGPVKTRDNAAQRAE------REFINRRTLRLWGRTWFNMVGSNVFACVRDTREGIRDPTGSRRQDRLRAGQIGPYPEWSLKNLRAPVPIDLPRRNFGGFDWYGGQDDDADAITDQPASGRRRKWKRGPAENDYPIRRSSYSLDSTIAAV-----SMEEAGQTSSPRSAGISGSDER--SGSNENGPIEDNLSFRHSNILVPSAVVVDRRGDAGPLTGREYVSHAQSISAKRRHGSHGRQCGAGLIEDDLPRRR----IGLAAGP----EILDDAVH--EQGIDENEAGLEADEDVQGPRRRRGRRRGEPAGEDFPRRRPSVWSVSGFSVD---HVDNTDLQSVPEHDNDLEHFSDVHGPQNGQSRT-----------RRGPVEDSLPRRRFCSSSIPMSSLD------SSDEADRQ------PLPEYGN---------------DLEA---VVDDGSLHGWGHRQGRHLEDDLPHRRSGYSAASGFARHLDEDLSLPAMHNLDTNMWPASVQQSARSDRTHKWGEPVQDD--LPRRRSVFCSASTASMDSIH-GSSRQAVPKDGLKFDVDETPPQRRGSCPHGGPV--QNDLSSR 1103 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig74.165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig74.165.1 >prot_P-littoralis_Contig74.165.1 ID=prot_P-littoralis_Contig74.165.1|Name=mRNA_P-littoralis_Contig74.165.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=694bp MGAILNRLRKLMDKARQEEEDEEREARAYIRSFTRRQWCGTWCAMLRHNLback to top mRNA from alignment at P-littoralis_Contig74:649670..652764- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig74.165.1 ID=mRNA_P-littoralis_Contig74.165.1|Name=mRNA_P-littoralis_Contig74.165.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3095bp|location=Sequence derived from alignment at P-littoralis_Contig74:649670..652764- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig74:649670..652764- >mRNA_P-littoralis_Contig74.165.1 ID=mRNA_P-littoralis_Contig74.165.1|Name=mRNA_P-littoralis_Contig74.165.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2082bp|location=Sequence derived from alignment at P-littoralis_Contig74:649670..652764- (Pylaiella littoralis U1_48)back to top |