mRNA_P-littoralis_Contig74.154.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig74.154.1
Unique NamemRNA_P-littoralis_Contig74.154.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig74.154.1 vs. uniprot
Match: D8LKD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKD6_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 1.280e-8
Identity = 68/267 (25.47%), Postives = 111/267 (41.57%), Query Frame = 1 
Query:  379 VTSRSRRKKSARVLKPISPAACDILE--ERRSSTVVLHKADPFERDSELLARGSLDLQQAAKLVVLNLGADPSLLSHTSDATRRRKLLSDAIYASMHPAGTVFAPIPQPWHHNLGIVHDAMESTGLRAEDHPLVVHYVSTRGGRPSSANILHQRPTADMVLIAHCDTGGSQSFTCNDKVTSEHPFGAPAGTVAIPKSSMIQLPAPGRNQAV--------PTTAL-------SYAVNRFTSVGDTVCCLPIETSLEMSGVALRTGRKI 1128
            +T R +++K    ++ +S AA    +  + R     +   D F  D +   R     + +A LV +NLGADPSLL  T +AT R      A+ + +HP GTV   +    + +   +   +++  L  E +P+V  Y+  + GR       H       VL+AH     +  F C+      HP G          S+  + P     +AV        P+TA         + +NRFT  GD V     E +  ++ + L  GR +
Sbjct:   13 MTGRFQQRKGTPSVRTLSKAAAKTEQWAKLRKEVTTVQSVDIFSSDFDSTTRPLEVDRDSAMLVFVNLGADPSLLDGTDEATERLHAGLVALESVLHPRGTVVIAMGSIANFDFPCMEARLKAADLAMEKNPVVSIYLEGQPGRIPERLKNHLTTQGCSVLVAH----KTNDFACHG-----HPLGKRRAARGAASSASFKSPRQASFEAVGFVVSDKHPSTATFLSTSTADHLINRFTVPGDCVLVTTFEEN-PLASLVLGQGRHL 269
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig74.154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKD6_ECTSI1.280e-825.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig74contigP-littoralis_Contig74:621625..623478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1170
Hectar predicted targeting categoryother localisation
Exons5
Cds size1170
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791534.1899643-CDS-P-littoralis_Contig74:621624..6218151680791534.1899643-CDS-P-littoralis_Contig74:621624..621815Pylaiella littoralis U1_48CDSP-littoralis_Contig74 621625..621815 +
1680791534.2054408-CDS-P-littoralis_Contig74:621993..6222661680791534.2054408-CDS-P-littoralis_Contig74:621993..622266Pylaiella littoralis U1_48CDSP-littoralis_Contig74 621994..622266 +
1680791534.2210631-CDS-P-littoralis_Contig74:622444..6227071680791534.2210631-CDS-P-littoralis_Contig74:622444..622707Pylaiella littoralis U1_48CDSP-littoralis_Contig74 622445..622707 +
1680791534.234563-CDS-P-littoralis_Contig74:622865..6231751680791534.234563-CDS-P-littoralis_Contig74:622865..623175Pylaiella littoralis U1_48CDSP-littoralis_Contig74 622866..623175 +
1680791534.2483132-CDS-P-littoralis_Contig74:623345..6234781680791534.2483132-CDS-P-littoralis_Contig74:623345..623478Pylaiella littoralis U1_48CDSP-littoralis_Contig74 623346..623478 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig74.154.1prot_P-littoralis_Contig74.154.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig74 621625..623478 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig74.154.1

>prot_P-littoralis_Contig74.154.1 ID=prot_P-littoralis_Contig74.154.1|Name=mRNA_P-littoralis_Contig74.154.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=390bp
MDADERLDDDYPGGSIDSGGYSDDDEPDGNMEFGGDDSADGASGAGSGVP
DELCDACTPPATSSYRCVVCNMTHTGGGCGASESFGQRDDFAHSLGDKAR
ICVKCKPALEQQGRASNQKERAADGVVTSRSRRKKSARVLKPISPAACDI
LEERRSSTVVLHKADPFERDSELLARGSLDLQQAAKLVVLNLGADPSLLS
HTSDATRRRKLLSDAIYASMHPAGTVFAPIPQPWHHNLGIVHDAMESTGL
RAEDHPLVVHYVSTRGGRPSSANILHQRPTADMVLIAHCDTGGSQSFTCN
DKVTSEHPFGAPAGTVAIPKSSMIQLPAPGRNQAVPTTALSYAVNRFTSV
GDTVCCLPIETSLEMSGVALRTGRKIEVFGRSDAGRETFR
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mRNA from alignment at P-littoralis_Contig74:621625..623478+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig74.154.1 ID=mRNA_P-littoralis_Contig74.154.1|Name=mRNA_P-littoralis_Contig74.154.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1854bp|location=Sequence derived from alignment at P-littoralis_Contig74:621625..623478+ (Pylaiella littoralis U1_48)
ATGGACGCAGACGAACGCCTTGACGACGACTATCCGGGCGGAAGCATAGA
TTCAGGTGGATATTCAGACGACGATGAACCGGACGGCAACATGGAGTTTG
GTGGAGATGACAGCGCGGATGGCGCCAGTGGTGCTGGCTCTGGAGTACCA
GATGAGCTTTGTGACGCATGCACGCCACCAGCCACTTCAAGGTACGGGGA
CGTACGTACCCCTGATTTTCTTTCGGTTCATTTGAGCGGTTGCGGTTTGC
CGTGGCCGAATTTTCGGTTCGTTTGGGCGACTCCTAGGTAGCGATGAACA
AGGTATGCAAACCAGCCATTTAAAACGAAGCACATGTCTCCGTTGTTTAT
TTTGTTACCTGTCAAGCAGCTACCGTTGCGTAGTTTGCAACATGACGCAC
ACAGGAGGCGGTTGCGGTGCATCCGAGAGCTTTGGCCAACGCGACGACTT
TGCCCACAGCCTTGGCGACAAAGCGAGAATCTGTGTGAAATGTAAGCCCG
CCCTGGAGCAGCAGGGACGAGCTTCCAACCAAAAGGAGAGGGCGGCTGAC
GGCGTTGTCACGTCCAGGAGTAGACGAAAGAAATCTGCGCGTGTATTGAA
GCCCATCAGCCCTGCTGCCTGCGATATCTTGGAAGAGAGGAGGTGAAGCA
CCAGTACGCCTTCCTTTTGCCTGTTTTGTCGGTTAGTGTCGATGTATACC
ATTATTATGTGGTGCGTGGTTGTTTATCACATAGTTCACTATTCTTTTAC
GTTTCTTCCTTGTAATCCGAGCCGCCTATTTACCTTCTTTACCCCAAACA
CACTCAACTATCTTCAACAGATCGTCGACGGTCGTACTTCACAAGGCCGA
CCCCTTTGAGAGAGACTCGGAGCTTCTGGCACGCGGTAGCCTCGATCTTC
AGCAAGCGGCTAAACTTGTTGTGCTGAACCTAGGGGCCGACCCTTCGCTT
CTCTCACACACTTCCGATGCTACTCGACGCCGTAAACTGCTCAGTGACGC
CATATACGCAAGCATGCACCCTGCTGGCACCGTGTTTGCCCCCATCCCCC
AACCTTGGCATCACAATCTAGGAATCGTCCACGGTAAGGAGAGGGGTCAT
GAGTACCGGCTGATAATTGGTTGTAGGTTGGTGTCAATCATTAGTCTCCG
TCCCCATTACGGCAATGATAAGCCAGTGCAATGAGCCCAACCCGTTGCTC
AAAATCAACACTGCTTATCGACCAACTGAAACCTGTTGCAGACGCCATGG
AAAGCACCGGGCTGAGAGCGGAGGACCACCCTCTCGTTGTCCACTACGTT
TCCACGCGAGGAGGCCGACCCTCCAGCGCAAATATTTTGCACCAGCGGCC
CACTGCTGATATGGTACTCATCGCTCACTGCGATACAGGGGGAAGCCAGT
CCTTCACATGCAACGACAAGGTGACCTCCGAACATCCTTTCGGAGCTCCG
GCGGGGACGGTGGCCATTCCGAAATCATCCATGATTCAACTTCCAGCTCC
GGGCAGGAACCAAGCCGTACCGACTACAGCTTTGAGTTACGCCGTTAACA
GGTGCGCATGACGTCTTCTATCAATGCCCCTCGGAACATGTGGGTGGCTT
CGTCCATATTGTTGTGTTTATCAGCACAGAACAGCAGCGTCTCATCATAG
CCAGATTTCGTGGAGACTATTTTCGCTGGTTGTAGCGATCTGAACCCAGC
CGCTTGTATCGTCGAATTTAGGTTCACCTCTGTCGGAGACACGGTGTGCT
GCTTGCCGATCGAAACATCGTTAGAGATGTCTGGAGTCGCCTTGAGGACA
GGCAGAAAGATCGAGGTGTTCGGGCGAAGTGATGCAGGGCGCGAGACTTT
TCGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig74:621625..623478+

>mRNA_P-littoralis_Contig74.154.1 ID=mRNA_P-littoralis_Contig74.154.1|Name=mRNA_P-littoralis_Contig74.154.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1170bp|location=Sequence derived from alignment at P-littoralis_Contig74:621625..623478+ (Pylaiella littoralis U1_48)
ATGGACGCAGACGAACGCCTTGACGACGACTATCCGGGCGGAAGCATAGA
TTCAGGTGGATATTCAGACGACGATGAACCGGACGGCAACATGGAGTTTG
GTGGAGATGACAGCGCGGATGGCGCCAGTGGTGCTGGCTCTGGAGTACCA
GATGAGCTTTGTGACGCATGCACGCCACCAGCCACTTCAAGCTACCGTTG
CGTAGTTTGCAACATGACGCACACAGGAGGCGGTTGCGGTGCATCCGAGA
GCTTTGGCCAACGCGACGACTTTGCCCACAGCCTTGGCGACAAAGCGAGA
ATCTGTGTGAAATGTAAGCCCGCCCTGGAGCAGCAGGGACGAGCTTCCAA
CCAAAAGGAGAGGGCGGCTGACGGCGTTGTCACGTCCAGGAGTAGACGAA
AGAAATCTGCGCGTGTATTGAAGCCCATCAGCCCTGCTGCCTGCGATATC
TTGGAAGAGAGGAGATCGTCGACGGTCGTACTTCACAAGGCCGACCCCTT
TGAGAGAGACTCGGAGCTTCTGGCACGCGGTAGCCTCGATCTTCAGCAAG
CGGCTAAACTTGTTGTGCTGAACCTAGGGGCCGACCCTTCGCTTCTCTCA
CACACTTCCGATGCTACTCGACGCCGTAAACTGCTCAGTGACGCCATATA
CGCAAGCATGCACCCTGCTGGCACCGTGTTTGCCCCCATCCCCCAACCTT
GGCATCACAATCTAGGAATCGTCCACGACGCCATGGAAAGCACCGGGCTG
AGAGCGGAGGACCACCCTCTCGTTGTCCACTACGTTTCCACGCGAGGAGG
CCGACCCTCCAGCGCAAATATTTTGCACCAGCGGCCCACTGCTGATATGG
TACTCATCGCTCACTGCGATACAGGGGGAAGCCAGTCCTTCACATGCAAC
GACAAGGTGACCTCCGAACATCCTTTCGGAGCTCCGGCGGGGACGGTGGC
CATTCCGAAATCATCCATGATTCAACTTCCAGCTCCGGGCAGGAACCAAG
CCGTACCGACTACAGCTTTGAGTTACGCCGTTAACAGGTTCACCTCTGTC
GGAGACACGGTGTGCTGCTTGCCGATCGAAACATCGTTAGAGATGTCTGG
AGTCGCCTTGAGGACAGGCAGAAAGATCGAGGTGTTCGGGCGAAGTGATG
CAGGGCGCGAGACTTTTCGA
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