mRNA_P-littoralis_Contig74.149.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig74.149.2
Unique NamemRNA_P-littoralis_Contig74.149.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig74.149.2 vs. uniprot
Match: A0A6H5JJG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG9_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 4.210e-13
Identity = 40/109 (36.70%), Postives = 56/109 (51.38%), Query Frame = 1 
Query:    4 VVAFLKARGELVGQYMPDKAVIRLYDKSKSGVYDMYLTEQKGLHGNISGA-----CSASHFNRIWREECQFLKLTQGRDFMLCNVCTLANQTLHGTPGGEATTDSSIRE 315
            VVAFL    ++ GQ MP+     LY KSK  +Y+ Y    + L+G    +     CS ++FN++W      LKL    DFMLC +CTL  + +HG  G     D + RE
Sbjct:  254 VVAFLHRHEDMYGQKMPNSDQSYLYLKSKLELYEEYSKNTRELYGQDPASLAERLCSKNYFNQVWSAHFGNLKLKPNGDFMLCEICTLLKEKIHGQAGSRGVLDEAERE 362
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig74.149.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JJG9_9PHAE4.210e-1336.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig74contigP-littoralis_Contig74:608512..613489 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size328
Hectar predicted targeting categoryother localisation
Exons2
Cds size327
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791534.1353936-CDS-P-littoralis_Contig74:608512..6087461680791534.1353936-CDS-P-littoralis_Contig74:608512..608746Pylaiella littoralis U1_48CDSP-littoralis_Contig74 608513..608746 -
1680791534.1461656-CDS-P-littoralis_Contig74:613396..6134891680791534.1461656-CDS-P-littoralis_Contig74:613396..613489Pylaiella littoralis U1_48CDSP-littoralis_Contig74 613397..613489 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig74.149.2prot_P-littoralis_Contig74.149.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig74 608513..613489 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig74.149.2

>prot_P-littoralis_Contig74.149.2 ID=prot_P-littoralis_Contig74.149.2|Name=mRNA_P-littoralis_Contig74.149.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=109bp
EVVAFLKARGELVGQYMPDKAVIRLYDKSKSGVYDMYLTEQKGLHGNISG
ACSASHFNRIWREECQFLKLTQGRDFMLCNVCTLANQTLHGTPGGEATTD
SSIRESTEA
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mRNA from alignment at P-littoralis_Contig74:608512..613489-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig74.149.2 ID=mRNA_P-littoralis_Contig74.149.2|Name=mRNA_P-littoralis_Contig74.149.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=4978bp|location=Sequence derived from alignment at P-littoralis_Contig74:608512..613489- (Pylaiella littoralis U1_48)
GAGGTTGTGGCGTTTCTGAAGGCACGAGGCGAACTAGTTGGTCAGTACAT
GCCAGACAAGGCGGTCATCCGACTGTACGACAAGAGCAAGTCGGTAAGAA
GCTCGTTTCGGTTTCGTCAAAGTTTATACTTTATGAAATTGATTTGGCAT
TTTCATAAGAGCGGTGAGCAAAGCGCATCTCCCGTACGTAAGTAAATCTT
TTCCTGGCATCACGACTACCTACCCAACCTTTACCTACGCCCCCCCAACC
CGAGGGGGGTGGGGGGGAGCAACCTGACGTAACTCAACGAAGTCAACGCA
ACTTAACCTAACCCCACCCAAACAATGTCAGCCAAATCCCCCGCGTACGC
TTGCCTGGCCACAGAGGGCTTGAGACACATCCGAGGATTAGAGGGGGCGG
GTTCCACACGGGCGCCTTCATAAAACCGATATTCTCGGTATTCTGCTGTT
CGTATCCCTAGCGACATTTTTGCATTTTAGTTGAGACATATGTCCCTGAC
ATGGGCGAGACCCTCCCCCTACCCGCTAGAGTAGATATCTGGGAATCGAC
GATGACCGGCATTCACGGAACCCCCCTTTTTTTCGGGAGAATCGATTGTT
TTCGGGAAAAGCAGGGAGTGTTGCTTGCTGCCGAAAGAGCACGCCCAAAA
ACACGCACCGACCCATCCTCGCACTACCCCTCGACCCCAACCGGATCCAT
TCTGTCACTCCCACCCGACGAACGCTCACAACCCGGCTGTGTTCTATAGT
CTGATGTTAGAGTAGCAGCAGTAAACGCCAGCACTAGTTCCAGGAAGAGG
ACGGGAGAGGGCTGTGGGTGCTTTGCCTATCGTTAGGGGCTCAATGCTGG
TGGTTGTTTCTGCATACAGCAGTAGTACAGCAGTGTAGTATGAAGTACGA
TTAGTACTGCTGACTCCACGACGAGTAGGTAGGTGACCACACACAGCAGT
ACCAGGACGAGGAGGCCACTCCGCGCACAGCACATAGACCTTTGAGACTC
CAGAGTGAGAAATATAGAGAGGTTTTCGAACGATATCCCGACGTAACTCA
AACGCCAACCCAACGAAACTACCCCAACCCAAGCCACCCTTACAATCCCC
CCTAACCCAACTTAACCCAACCGCCCCAACTCATCCGAACCCAACCCTAA
CCAACCCAAACCAACCCAACCATACGGTACCCTCCCCTACCCCCCCCCCA
GAGAGTGGGGCGCAACCCTACACAACTCAACTCAACCCGACCCAACTCTA
CCGAACTCAACCCTCCCCAACCCAACGCTACCCGACCCAACCCAACCCAA
CCATACGGTACCCCCCCCCAACCCCCCCCCTGGAGGGGGGAGGGGGGGGG
CGCGCGACTCAACATAACACAACACAACACAACACAACCCCGATCATGAG
TGGGGGGCGTAACCCTACAGACCCAACCCAACCGTACTGTACCCCTCCCC
AACCCCCCCAGAGGAGACAAGTTGCAAACTCGCGACCTCGCATGATCGCC
CAAATTTGAGACTTTGTTTTTTTATCGGTCTCTTTCGACGCCTGCTTCAT
TTTGGCCTGATAAAGCCGGATTGGGCTTCCGTGTTTCATACTCGCAAAGC
CCCAGTGGATTTGTTTCCATGTCAGAGTACCCGCTCAAGAAACGGAATAA
TCAATCAAGAGACAAAGCAAAAAAGGAATACTGCTGTCGTACGAGTAGAG
TACCACCCACTAAACAACCAACAATCAATAGTGATGATGTGGTATCATCT
GTAAAACATTGCGGGCTAGCCCACTTTCTTGTGCTCGATGGAACTCACGT
CCCGCCGCCTTCAACCTACTCCAGATAACAATACTGCTCGTGATTGTGCA
CCACAACAGTTGGTGTAGACAGACGGTTTTGCAAGCCAGCTTTTAATATC
AGCAGGCAGCCCGAAATTAGACAAAACGAAATCACACCCTTTCATCTATC
TCTACAGACACCTTTGATGCTCGTTTTAGCAACACTCCGCTTCTGTACAG
AGTAGGTACAAATGGGGCTCCCAAAAAGCAGGGGAAAGGCCATGTACAGC
AGCATATTGAAGCAGGTTCAAGGCGACGGGTAGGTGTGTATAGGTGTACA
GAAGCAGCAGCACGTGATCAAAGCTCTCGATTATCGCATGTTGGAATGAG
AACGCACGGCGAATCATTTTATTTTTCCTGGAATAGTTGGATGTATTTTT
TTGTTTTTGCTGCTTCGCGCTCTCATTGCTCGGCTGCCTTGCGGGCTCCG
ATCTCGCGCGGTTTGCTAAGCGGAAGCCTTAGGAAGCTTTTTGATATCGA
CGTTGTTAGCGAGGCAGTGCAGTCAGCGGTGTCACGAGTCGACCATGTAT
AGAGCTTTCTGGCATCGTCTTCGTGTGTGTGTGTCTTAGGGTTGGTACTC
GTAAAAGTAGTGCTGGTGTGCTGTGCTGTGCTACAGCAGCAGCAGTGCGG
CAGCACGGCAGAAGTATTTATTCGCTGGGTGTTCTCATCATGGTGTTGTG
TACTCGTATCACAAGATTGATCGTGGGGGTGATTTGGTGAGGAACGAAGC
CCCCCCGTGATGGCCGTCTGTGAATCCCCCGCTTGATGAAGCTTTGGTGA
AGAAAAGCTACTTAGTTTGATCGAGCGGGAATTTTGCAACTTGGGACGTC
CTCCCAAATCCTGCTATATTTGGATGCCGAAAGAAGCAAGGAAAAACTGC
CCTTTGTTTCACACTCGTAAAGCTATATCGCCCATTTCTCGGAATGTTTG
TGATGAAGAGCCTTATACTGACTACGGTTATGCAAGGTCTCGATTTTGCA
ACGTGTCTAGGGGGGGCACGCGACCCAACCCAACCCCCCAACCGTACGGT
ACCCCACCCAAACCCCCCCAAACCCCCCCAGAGGGGAGGGCGCAACCCTA
CACAACTCAACCCGACCCAACCCTCCCCAACCCAACCCTACCCAATCGAA
CCAAAACCAACCATACGGTATCCCCCCCAACCCCCCCACCCAACCCAGCC
CAACACAACCCACACAACCCAATACAACACAACACAGCCCAACCGTACGG
TACCCCCCCCAACCCCCCGAGGGGGGGGCGCAACCTTTCCCTACCCAACC
CAATCGTGGGTGGGGGGCAGCGCAACCCTACACAACCCAACTCAAATGAA
AACACCACCCAACCAAACACAACCTAAAACCCCTGCCCAACCCCCTCCCG
GCAACCCAACCCAACCAAACACGACCCAAAACCCTACACAACCCAACTCA
AATACAAACACCAACCCAACCATACGGTACCCCTCCCAACCCCCCCAAAG
GGGGGGGGCGCAACCCTACCCTACCCAACCAAACTAACCAACCCCGCCCA
ACACAACCCAACTCAACCCAACATCTTCCAACCCCCCCCCCCCCAGGGGC
CCCGTGGTGGAATGTTTTTTCACTAATAGATTTGTGTTTTATTTTAACTC
AGAAAAATTGTTTGCAGTGCACTCGCGCGATTCAGTGGTTGATTGAGGCC
TAGCTCCGATTCGTTTTGTTGAAATCAGGGCGTCTACGACATGGAACCCT
AACCCCTACCAGAAGCTTTGGTGAAGAAAAGCTACTTTGCTTGATCAAGC
GGGAACTCTGCAACTTAAAACATCCTTCCAAACCCTGCTAAATTTAGATG
CCGAAGGAAGGAAAAATTGCCCTTTGTTTCACACTTGTAAAGCTATATCG
CCCATTTCTCGGAATGTTTGGCATTAAGAGCCGAATATTGGCTACGATCA
TGCAAGGTCTCGATTTTTTATGATGTGTCTAGGGGGGCACGCGACCCAAC
CCAACTCCCCAACCGTACGGTATCCCCCCCCCCCCCCCAACCCCCCCAGA
GGTGAGGGCGCAACCCTACACAACTCAACCCAACCCAACCCTCCCCAACC
CAGCCCTACCCAATCGAACCAAACCCAACCAAACGATACCCCTCCCAACC
CCCCGACCCAACCCAGCCCAACACAACCCCACACAACCCAACACAACATA
ACACAGCCCAACCGTACGGTACTCCCCCCAACCCCCCGAGGGGGGGGCGC
AACCTTACCCTACCCAACCCAATCGTGGGGGGGGGGCGCAACCCTACCCT
ACCCAACCCAATCATGGCGAGGGGCGTAATCCTACCAACCCAACCCAACC
GTACGGTACCCCCCCAACCCCCCCCAGAGGGGGGGGCGCAACCCGACACA
ACCCAACCCAACCCAACCGTACGGTACCCCCCAACCCCTCTCCCCAGAGG
GGGGGGCAACAACCCGACACAACCCAACCCAACCCAACCGTACGGTATCC
CCCCAGCCTCCCCCATAGGGGGGCGCAACCATACCGTACCCTACCCAACC
CCCTCCCGAGGGGGGCAACAACAAGACAACCAAACACAACCCAAAACCCT
ACACAACCCAACTCAATTGAAAACACCACAACCAAACACAACCCAAAACC
CTACACAACCCAACTCAATTATAAACACCACCCCAACCCAACCATACGGT
TCCCCTCCCAACCCCCCGGGCGCAACCCTACCCTACTCAACCAAACCAAC
CAACCCAACGAAACACAACCCAACTCAACCCAACACCTCACCAACCCTCC
CCCCCCGACAGGGGCCCCGTGGTGGAATATTTTTTTACAAATAGTTTTGT
GTTATTTTTTGACTCAGAAAAATTGTTTGCAGTGCACTCGCGCGATTCAG
TGGTTTAATGAGGCCTAGCTCCGATTCGTTTTGTTGAAATCAGGGCGTCT
ACGACATGTACCTGACCGAACAGAAGGGGCTACATGGCAACATTTCCGGA
GCCTGCAGCGCCTCGCACTTCAACAGGATTTGGAGGGAAGAATGCCAGTT
TCTGAAGCTCACACAAGGGAGAGACTTTATGCTCTGCAATGTTTGTACGC
TAGCGAACCAAACCCTTCATGGAACACCCGGGGGAGAGGCTACGACTGAC
TCGTCGATCAGAGAGTCGACAGAAGCGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig74:608512..613489-

>mRNA_P-littoralis_Contig74.149.2 ID=mRNA_P-littoralis_Contig74.149.2|Name=mRNA_P-littoralis_Contig74.149.2|organism=Pylaiella littoralis U1_48|type=CDS|length=327bp|location=Sequence derived from alignment at P-littoralis_Contig74:608512..613489- (Pylaiella littoralis U1_48)
GAGGTTGTGGCGTTTCTGAAGGCACGAGGCGAACTAGTTGGTCAGTACAT
GCCAGACAAGGCGGTCATCCGACTGTACGACAAGAGCAAGTCGGGCGTCT
ACGACATGTACCTGACCGAACAGAAGGGGCTACATGGCAACATTTCCGGA
GCCTGCAGCGCCTCGCACTTCAACAGGATTTGGAGGGAAGAATGCCAGTT
TCTGAAGCTCACACAAGGGAGAGACTTTATGCTCTGCAATGTTTGTACGC
TAGCGAACCAAACCCTTCATGGAACACCCGGGGGAGAGGCTACGACTGAC
TCGTCGATCAGAGAGTCGACAGAAGCG
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