mRNA_P-littoralis_Contig74.143.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig74.143.1
Unique NamemRNA_P-littoralis_Contig74.143.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig74.143.1 vs. uniprot
Match: A0A6H5JFH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFH8_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 9.970e-35
Identity = 61/88 (69.32%), Postives = 72/88 (81.82%), Query Frame = 1
Query:    1 ELPKTLRDRVTSKRLYPDGKKVKFCHQDECIYRSNDSERKSWVPPNVHGLKKKGDGTGIMISGTIVDNEGFIIGDEDDIKKAQELRRK 264
            ELP+ LR+RVTSK+ Y DG++  FC+QDECIYR+ND +R +WVPPN H LKKKGDG GIMISGTIVDN GF+  D+ DI KAQ LRRK
Sbjct:  152 ELPQHLRERVTSKKTYSDGRRAIFCYQDECIYRANDGQRFAWVPPNYHALKKKGDGQGIMISGTIVDNVGFVASDQADIDKAQALRRK 239          
BLAST of mRNA_P-littoralis_Contig74.143.1 vs. uniprot
Match: A0A6H5JXQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXQ2_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.790e-33
Identity = 60/88 (68.18%), Postives = 71/88 (80.68%), Query Frame = 1
Query:    1 ELPKTLRDRVTSKRLYPDGKKVKFCHQDECIYRSNDSERKSWVPPNVHGLKKKGDGTGIMISGTIVDNEGFIIGDEDDIKKAQELRRK 264
            ELP+ LR+RVTSK+ Y DG++  FC+QDECIYR+ND +R +WVPPN H LKKKGDG GIM SGTIVDN GF+ GD+ DI KAQ  RRK
Sbjct:  177 ELPQHLRERVTSKKTYSDGRRAIFCYQDECIYRANDDQRFAWVPPNYHALKKKGDGQGIMTSGTIVDNVGFVAGDQADIDKAQAFRRK 264          
BLAST of mRNA_P-littoralis_Contig74.143.1 vs. uniprot
Match: A0A6H5KPN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPN2_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 3.650e-33
Identity = 58/88 (65.91%), Postives = 71/88 (80.68%), Query Frame = 1
Query:    1 ELPKTLRDRVTSKRLYPDGKKVKFCHQDECIYRSNDSERKSWVPPNVHGLKKKGDGTGIMISGTIVDNEGFIIGDEDDIKKAQELRRK 264
            ELP+ L +RVTSK+ Y +G++  FC+QDECIYR+ND +R +WVPPN H LKKKGDG GIMISGTIVDN GF+ G + DI +AQ LRRK
Sbjct:  146 ELPQHLCERVTSKKTYSNGRRAIFCYQDECIYRANDGQRSAWVPPNYHALKKKGDGQGIMISGTIVDNVGFVAGGQADIDEAQALRRK 233          
BLAST of mRNA_P-littoralis_Contig74.143.1 vs. uniprot
Match: A0A6H5JU25_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU25_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 6.520e-33
Identity = 60/88 (68.18%), Postives = 72/88 (81.82%), Query Frame = 1
Query:    1 ELPKTLRDRVTSKRLYPDGKKVKFCHQDECIYRSNDSERKSWVPPNVHGLKKKGDGTGIMISGTIVDNEGFIIGDEDDIKKAQELRRK 264
            ELP+ LR+RVTSK+ Y DG++  FC+QDECIYR+ND +R +WVPPN H LKKKGDG GIMISGTIVDN GF+ GD+ DI +A  LRRK
Sbjct:  514 ELPQHLRERVTSKKTYSDGRRAIFCYQDECIYRANDGQRYAWVPPNFHALKKKGDGQGIMISGTIVDNVGFVAGDQADIDEAHALRRK 601          
BLAST of mRNA_P-littoralis_Contig74.143.1 vs. uniprot
Match: A0A6H5JC29_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC29_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 2.750e-32
Identity = 58/82 (70.73%), Postives = 68/82 (82.93%), Query Frame = 1
Query:   16 LRDRVTSKRLYPDGKKVKFCHQDECIYRSNDSERKSWVPPNVHGLKKKGDGTGIMISGTIVDNEGFIIGDEDDIKKAQELRR 261
            LR RVTSK+ YP+GK+  FC QDEC+YR ND +R SWVPPN +GLKKKG+G GIMISGTIVDN GF+ G++ DI KAQELRR
Sbjct:  167 LRKRVTSKKAYPEGKRAIFCFQDECMYRGNDDQRCSWVPPNFNGLKKKGEGAGIMISGTIVDNVGFVAGNQSDIDKAQELRR 248          
BLAST of mRNA_P-littoralis_Contig74.143.1 vs. uniprot
Match: A0A6H5KNH0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH0_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 2.920e-31
Identity = 58/88 (65.91%), Postives = 70/88 (79.55%), Query Frame = 1
Query:    1 ELPKTLRDRVTSKRLYPDGKKVKFCHQDECIYRSNDSERKSWVPPNVHGLKKKGDGTGIMISGTIVDNEGFIIGDEDDIKKAQELRRK 264
            E P  LR+RVTSK+ Y DG++  FC+QDEC YR+ND +R +WVPPN + LKK+GDG GIMISGTIVDN GF+ GD+ DI KAQ LRRK
Sbjct:  205 EFPLHLRERVTSKKTYSDGRRAIFCYQDECTYRANDGQRFAWVPPNYYALKKQGDGQGIMISGTIVDNVGFVAGDQADIDKAQTLRRK 292          
BLAST of mRNA_P-littoralis_Contig74.143.1 vs. uniprot
Match: A0A6H5KFI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFI8_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 1.290e-28
Identity = 54/82 (65.85%), Postives = 67/82 (81.71%), Query Frame = 1
Query:   16 LRDRVTSKRLYPDGKKVKFCHQDECIYRSNDSERKSWVPPNVHGLKKKGDGTGIMISGTIVDNEGFIIGDEDDIKKAQELRR 261
            LR RVTSK+ Y DG++  FC+QDECIYR++D E K+W PP +HGLKKKG+G GIMISGTIV + GF+ G +DDI KAQ+LRR
Sbjct:  252 LRARVTSKKKYADGRRAIFCYQDECIYRAHDGESKAWWPPMMHGLKKKGEGQGIMISGTIVGDVGFVEGTQDDIDKAQDLRR 333          
BLAST of mRNA_P-littoralis_Contig74.143.1 vs. uniprot
Match: A0A6H5JEX5_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX5_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 4.480e-28
Identity = 54/82 (65.85%), Postives = 67/82 (81.71%), Query Frame = 1
Query:   16 LRDRVTSKRLYPDGKKVKFCHQDECIYRSNDSERKSWVPPNVHGLKKKGDGTGIMISGTIVDNEGFIIGDEDDIKKAQELRR 261
            LR RVTSK+ Y DG++  FC+QDECIYR++D E K+W PP +HGLKKKG+G GIMISGTIV + GF+ G +DDI KAQ+LRR
Sbjct:  268 LRARVTSKKKYADGRRAIFCYQDECIYRAHDGESKAWWPPMMHGLKKKGEGQGIMISGTIVGDVGFVEGTQDDIDKAQDLRR 349          
BLAST of mRNA_P-littoralis_Contig74.143.1 vs. uniprot
Match: A0A6H5JJP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP5_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 4.690e-26
Identity = 51/81 (62.96%), Postives = 62/81 (76.54%), Query Frame = 1
Query:    1 ELPKTLRDRVTSKRLYPDGKKVKFCHQDECIYRSNDSERKSWVPPNVHGLKKKGDGTGIMISGTIVDNEGFIIGDEDDIKK 243
            EL   LR RVTSK+ Y DG+K  FCHQDECIYR+ND ER +W PP  HGL+KKG+G GIMISGTIV + GF+ G +++I K
Sbjct:  117 ELHPNLRARVTSKKEYADGRKAIFCHQDECIYRANDGERMAWWPPTTHGLRKKGEGQGIMISGTIVGDVGFVEGTQEEIDK 197          
BLAST of mRNA_P-littoralis_Contig74.143.1 vs. uniprot
Match: A0A6H5JUL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUL0_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 3.450e-23
Identity = 46/74 (62.16%), Postives = 56/74 (75.68%), Query Frame = 1
Query:    1 ELPKTLRDRVTSKRLYPDGKKVKFCHQDECIYRSNDSERKSWVPPNVHGLKKKGDGTGIMISGTIVDNEGFIIG 222
            ELP+ LR+RVTSK+ Y DG++   C+ DECIYR+ND +R +WVPPN H  K+KGD  GIMISGTIVDN G   G
Sbjct:  378 ELPQHLRERVTSKKTYSDGRRAILCYHDECIYRANDGQRFAWVPPNYHAFKRKGDSQGIMISGTIVDNVGVEYG 451          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig74.143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5JFH8_9PHAE9.970e-3569.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXQ2_9PHAE1.790e-3368.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPN2_9PHAE3.650e-3365.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU25_9PHAE6.520e-3368.18Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JC29_9PHAE2.750e-3270.73Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KNH0_9PHAE2.920e-3165.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFI8_9PHAE1.290e-2865.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEX5_9PHAE4.480e-2865.85Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJP5_9PHAE4.690e-2662.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUL0_9PHAE3.450e-2362.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig74contigP-littoralis_Contig74:596700..596963 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size265
Hectar predicted targeting categoryother localisation
Exons1
Cds size264
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791534.0518868-CDS-P-littoralis_Contig74:596699..5969631680791534.0518868-CDS-P-littoralis_Contig74:596699..596963Pylaiella littoralis U1_48CDSP-littoralis_Contig74 596700..596963 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig74.143.1prot_P-littoralis_Contig74.143.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig74 596700..596963 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig74.143.1

>prot_P-littoralis_Contig74.143.1 ID=prot_P-littoralis_Contig74.143.1|Name=mRNA_P-littoralis_Contig74.143.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=88bp
ELPKTLRDRVTSKRLYPDGKKVKFCHQDECIYRSNDSERKSWVPPNVHGL
KKKGDGTGIMISGTIVDNEGFIIGDEDDIKKAQELRRK
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mRNA from alignment at P-littoralis_Contig74:596700..596963+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig74.143.1 ID=mRNA_P-littoralis_Contig74.143.1|Name=mRNA_P-littoralis_Contig74.143.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=264bp|location=Sequence derived from alignment at P-littoralis_Contig74:596700..596963+ (Pylaiella littoralis U1_48)
GAACTCCCGAAAACGCTCCGAGATCGAGTCACCAGCAAACGACTTTATCC CGACGGCAAGAAAGTGAAATTCTGCCACCAAGACGAGTGCATCTACCGAT CCAACGACAGTGAGCGCAAATCGTGGGTCCCGCCCAATGTGCATGGGCTC AAAAAGAAGGGAGACGGAACCGGCATCATGATTTCTGGTACCATCGTGGA CAACGAGGGCTTCATCATCGGTGACGAAGATGACATCAAGAAGGCGCAAG AGTTGCGCCGCAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig74:596700..596963+

>mRNA_P-littoralis_Contig74.143.1 ID=mRNA_P-littoralis_Contig74.143.1|Name=mRNA_P-littoralis_Contig74.143.1|organism=Pylaiella littoralis U1_48|type=CDS|length=264bp|location=Sequence derived from alignment at P-littoralis_Contig74:596700..596963+ (Pylaiella littoralis U1_48)
GAACTCCCGAAAACGCTCCGAGATCGAGTCACCAGCAAACGACTTTATCC
CGACGGCAAGAAAGTGAAATTCTGCCACCAAGACGAGTGCATCTACCGAT
CCAACGACAGTGAGCGCAAATCGTGGGTCCCGCCCAATGTGCATGGGCTC
AAAAAGAAGGGAGACGGAACCGGCATCATGATTTCTGGTACCATCGTGGA
CAACGAGGGCTTCATCATCGGTGACGAAGATGACATCAAGAAGGCGCAAG
AGTTGCGCCGCAAG
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