mRNA_P-littoralis_Contig1188.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1188.1.1
Unique NamemRNA_P-littoralis_Contig1188.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1188.1.1 vs. uniprot
Match: A0A6H5JJ79_9PHAE (NADAR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ79_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 3.240e-38
Identity = 77/135 (57.04%), Postives = 90/135 (66.67%), Query Frame = 1 
Query:   76 FGLRGARPAVCVRRAIFNEEEAKLFGDSGSY-AIMASTDPSVHKSPGRGIRPFDYAKWETHRSEIALTGKYAKFAQKTHLAKHLLATGDRLLAEASPYDMLWGIDIPASHPHAAHPSKW--KGKNLLGDTLMRVR 471
            F + G R A C  + I +E+ AKLFGD  SY  IMA+TDP  HK  GR +RPFDYA+WE  R E+ LTG YAKFAQ   +  HLL TG RLLAEASP+D +WGI + A  P A+  SKW   GKNLLG  LM VR
Sbjct:   26 FDVLGVRYA-CGEQLIMSEK-AKLFGDMTSYDKIMAATDPKTHKFLGRNVRPFDYAEWERRREEVVLTGSYAKFAQNHAMKHHLLETGTRLLAEASPFDRVWGIGMSACFPGASDSSKWAASGKNLLGKALMEVR 158
[Close]
BLAST of mRNA_P-littoralis_Contig1188.1.1 vs. uniprot
Match: A0A6H5L3B4_9PHAE (NADAR domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3B4_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 3.410e-38
Identity = 72/116 (62.07%), Postives = 80/116 (68.97%), Query Frame = 1 
Query:  133 EEAKLFGDSGSY-AIMASTDPSVHKSPGRGIRPFDYAKWETHRSEIALTGKYAKFAQKTHLAKHLLATGDRLLAEASPYDMLWGIDIPASHPHAAHPSKW--KGKNLLGDTLMRVR 471
            E+AKLFGD  SY  IMA+TDP  HK  GR +RPFDYA+WE  R EI LTG YAKFAQ   +  HLL TG RLLAEASP+D  WGI + A  P A+  SKW   GKNLLG  LM VR
Sbjct:  113 EKAKLFGDLTSYDKIMAATDPKTHKFLGRNVRPFDYAEWERRREEIVLTGSYAKFAQNHDMKHHLLETGTRLLAEASPFDRFWGIGMSACFPDASVSSKWAASGKNLLGKALMEVR 228
[Close]
BLAST of mRNA_P-littoralis_Contig1188.1.1 vs. uniprot
Match: A0A6H5KB53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB53_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 6.310e-38
Identity = 72/116 (62.07%), Postives = 83/116 (71.55%), Query Frame = 1 
Query:  133 EEAKLFGDSGSY-AIMASTDPSVHKSPGRGIRPFDYAKWETHRSEIALTGKYAKFAQKTHLAKHLLATGDRLLAEASPYDMLWGIDIPASHPHAAHPSKW--KGKNLLGDTLMRVR 471
            E+AKLFGD+ SY  IMA+TDP  HK  GR +RPFDYA+WE  R EI +TG YAKFAQ   +  HLL TG RLLAEASP+D +WGI + A  P A+ PSKW   GKNLLG  LM VR
Sbjct:    4 EKAKLFGDTTSYDKIMAATDPKTHKFLGRNVRPFDYAEWERRREEIVVTGSYAKFAQNHDMKHHLLETGTRLLAEASPFDRVWGIGMSACFPDASDPSKWAASGKNLLGKALMEVR 119
[Close]
BLAST of mRNA_P-littoralis_Contig1188.1.1 vs. uniprot
Match: A0A6H5KWH8_9PHAE (NADAR domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWH8_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 8.560e-38
Identity = 67/116 (57.76%), Postives = 81/116 (69.83%), Query Frame = 1 
Query:  133 EEAKLFGDSGSY-AIMASTDPSVHKSPGRGIRPFDYAKWETHRSEIALTGKYAKFAQKTHLAKHLLATGDRLLAEASPYDMLWGIDIPASHPHAAHPSKW--KGKNLLGDTLMRVR 471
            E+AKLFGD  SY  IM +TDP  +K  GR +RPFDYA+WE  R EI LTG YAKFAQ   + +HL+ATG R LAEASP+D +WGI + A+ P A+  S W   G+NLLG  LM VR
Sbjct:   38 EKAKLFGDMASYDKIMTATDPKTYKYLGRKVRPFDYAEWERRREEIVLTGSYAKFAQNPAMKQHLMATGTRFLAEASPFDPVWGIGMAATSPEASDSSNWPNSGRNLLGKVLMEVR 153
[Close]
BLAST of mRNA_P-littoralis_Contig1188.1.1 vs. uniprot
Match: A0A6H5J9B4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9B4_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 1.690e-37
Identity = 72/116 (62.07%), Postives = 82/116 (70.69%), Query Frame = 1 
Query:  133 EEAKLFGDSGSY-AIMASTDPSVHKSPGRGIRPFDYAKWETHRSEIALTGKYAKFAQKTHLAKHLLATGDRLLAEASPYDMLWGIDIPASHPHAAHPSKW--KGKNLLGDTLMRVR 471
            E+AKLFGD  SY  IMA+TDP  HK  GR +RPFDYA+WE  R EI LTG YAKFAQ  ++  HLL TG RLLAEASP+D  WGI + A  P A+  SKW   GKNLLG+ LM VR
Sbjct: 1070 EKAKLFGDMTSYDKIMAATDPKTHKFLGRNVRPFDYAEWERRREEIVLTGSYAKFAQNHYMKHHLLETGTRLLAEASPFDRFWGIGMSACFPDASDSSKWAASGKNLLGNALMEVR 1185
[Close]
BLAST of mRNA_P-littoralis_Contig1188.1.1 vs. uniprot
Match: A0A6H5JDD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDD1_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 2.420e-37
Identity = 72/116 (62.07%), Postives = 81/116 (69.83%), Query Frame = 1 
Query:  133 EEAKLFGDSGSY-AIMASTDPSVHKSPGRGIRPFDYAKWETHRSEIALTGKYAKFAQKTHLAKHLLATGDRLLAEASPYDMLWGIDIPASHPHAAHPSKW--KGKNLLGDTLMRVR 471
            E+AKLFGD  SY  IMA+TDP  HK  GR +RPFDYA+WE  R EI LTG YAKFAQ   +  HLL TG RLLAEASP+D +WGI + A  P A+  SKW   GKNLLG  LM VR
Sbjct:  113 EKAKLFGDMTSYDKIMAATDPKTHKFLGRNVRPFDYAEWERRREEIVLTGSYAKFAQNHDMKHHLLETGTRLLAEASPFDRVWGIGMSACFPDASDSSKWAASGKNLLGKALMEVR 228
[Close]
BLAST of mRNA_P-littoralis_Contig1188.1.1 vs. uniprot
Match: A0A6H5K020_9PHAE (NADAR domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K020_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 4.220e-37
Identity = 72/116 (62.07%), Postives = 82/116 (70.69%), Query Frame = 1 
Query:  133 EEAKLFGDSGSY-AIMASTDPSVHKSPGRGIRPFDYAKWETHRSEIALTGKYAKFAQKTHLAKHLLATGDRLLAEASPYDMLWGIDIPASHPHAAHPSKW--KGKNLLGDTLMRVR 471
            E+AKLFGD  SY  IMA+TDP +HK  GR +RPFDYA+WE  R EI LTG YAKFAQ   +  HLL TG RLLAEASP+D +WGI + A  P A+  SKW   GKNLLG  LM VR
Sbjct:  797 EKAKLFGDMTSYDKIMAATDPKIHKFLGRNVRPFDYAEWERRREEIVLTGSYAKFAQNHDMKHHLLETGTRLLAEASPFDRVWGIGMSACFPDASVSSKWAASGKNLLGKALMEVR 912
[Close]
BLAST of mRNA_P-littoralis_Contig1188.1.1 vs. uniprot
Match: A0A6H5K8W4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W4_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 5.590e-37
Identity = 72/116 (62.07%), Postives = 81/116 (69.83%), Query Frame = 1 
Query:  133 EEAKLFGDSGSY-AIMASTDPSVHKSPGRGIRPFDYAKWETHRSEIALTGKYAKFAQKTHLAKHLLATGDRLLAEASPYDMLWGIDIPASHPHAAHPSKW--KGKNLLGDTLMRVR 471
            E+AKLFGD  SY  IMA+TDP  HK  GR +RPFDYA+WE  R EI LTG YAKFAQ   +  HLL TG RLLAEASP+D +WGI + A  P A+  SKW   GKNLLG  LM VR
Sbjct:  630 EKAKLFGDMTSYDKIMAATDPKTHKFLGRNVRPFDYAEWERRREEIVLTGSYAKFAQNHDMKHHLLETGTRLLAEASPFDRVWGIGMSACFPDASDSSKWAASGKNLLGKALMEVR 745
[Close]
BLAST of mRNA_P-littoralis_Contig1188.1.1 vs. uniprot
Match: A0A6H5JVW3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVW3_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 5.760e-37
Identity = 72/116 (62.07%), Postives = 81/116 (69.83%), Query Frame = 1 
Query:  133 EEAKLFGDSGSY-AIMASTDPSVHKSPGRGIRPFDYAKWETHRSEIALTGKYAKFAQKTHLAKHLLATGDRLLAEASPYDMLWGIDIPASHPHAAHPSKW--KGKNLLGDTLMRVR 471
            E+AKLFGD  SY  IMA+TDP  HK  GR +RPFDYA+WE  R EI LTG YAKFAQ   +  HLL TG RLLAEASP+D +WGI + A  P A+  SKW   GKNLLG  LM VR
Sbjct:  113 EKAKLFGDMTSYDKIMAATDPKTHKFLGRNVRPFDYAEWERRREEIVLTGSYAKFAQNHDMKHHLLETGTRLLAEASPFDRVWGIGMSACFPDASDSSKWAASGKNLLGKALMEVR 228
[Close]
BLAST of mRNA_P-littoralis_Contig1188.1.1 vs. uniprot
Match: A0A6H5JGS1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGS1_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 1.080e-36
Identity = 77/139 (55.40%), Postives = 91/139 (65.47%), Query Frame = 1 
Query:   64 ALDSFGLRGARPAVCVRRAIFNEEEAKLFGDSGSY-AIMASTDPSVHKSPGRGIRPFDYAKWETHRSEIALTGKYAKFAQKTHLAKHLLATGDRLLAEASPYDMLWGIDIPASHPHAAHPSKW--KGKNLLGDTLMRVR 471
            A D  G+R +    C  + + +E+ AKLFGD  SY  IMA+TDP  HK  GR +RPFDYA+WE  R EI LTG YAKFAQ   +  HLL TG RLLAEASP+D +WGI + A  P A+  SKW   GKNLLG  LM VR
Sbjct:  364 AFDVLGVRYS----CGEQLMMSEK-AKLFGDMTSYDKIMAATDPKTHKFLGRNVRPFDYAEWERRREEIVLTGSYAKFAQNHDMKHHLLETGTRLLAEASPFDRVWGIGMSACCPDASDSSKWAASGKNLLGKALMEVR 497
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1188.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJ79_9PHAE3.240e-3857.04NADAR domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L3B4_9PHAE3.410e-3862.07NADAR domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5KB53_9PHAE6.310e-3862.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KWH8_9PHAE8.560e-3857.76NADAR domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5J9B4_9PHAE1.690e-3762.07Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JDD1_9PHAE2.420e-3762.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K020_9PHAE4.220e-3762.07NADAR domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5K8W4_9PHAE5.590e-3762.07Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JVW3_9PHAE5.760e-3762.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGS1_9PHAE1.080e-3655.40Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1188contigP-littoralis_Contig1188:12159..12629 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FYJ3
PFAMsDUF1768
Model size473
Max annot lvl2759|Eukaryota
KEGG koko:K09935
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.28e-33
EggNOG OGsCOG3236@1|root,2S4FY@2759|Eukaryota
DescriptionDomain of unknown function (DUF1768)
Cds size471
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789498.0697782-CDS-P-littoralis_Contig1188:12158..126291680789498.0697782-CDS-P-littoralis_Contig1188:12158..12629Pylaiella littoralis U1_48CDSP-littoralis_Contig1188 12159..12629 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1188.1.1prot_P-littoralis_Contig1188.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1188 12159..12629 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1188.1.1

>prot_P-littoralis_Contig1188.1.1 ID=prot_P-littoralis_Contig1188.1.1|Name=mRNA_P-littoralis_Contig1188.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=157bp
QRPRVRFRHRASLLESTIGLLALDSFGLRGARPAVCVRRAIFNEEEAKLF
GDSGSYAIMASTDPSVHKSPGRGIRPFDYAKWETHRSEIALTGKYAKFAQ
KTHLAKHLLATGDRLLAEASPYDMLWGIDIPASHPHAAHPSKWKGKNLLG
DTLMRVR
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mRNA from alignment at P-littoralis_Contig1188:12159..12629+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1188.1.1 ID=mRNA_P-littoralis_Contig1188.1.1|Name=mRNA_P-littoralis_Contig1188.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=471bp|location=Sequence derived from alignment at P-littoralis_Contig1188:12159..12629+ (Pylaiella littoralis U1_48)
CAGCGCCCGCGAGTACGTTTCCGACACCGTGCTTCTCTTTTGGAATCCAC
CATCGGTCTTCTCGCATTGGACTCCTTCGGACTTCGAGGTGCTAGGCCTG
CGGTATGTGTGCGGCGAGCCATATTTAATGAGGAAGAGGCTAAATTGTTC
GGTGACAGTGGTAGCTATGCAATCATGGCCTCCACTGACCCCAGCGTTCA
TAAGTCTCCCGGACGCGGCATCCGTCCGTTTGACTATGCTAAGTGGGAAA
CGCACCGTTCCGAAATTGCTCTCACGGGGAAATATGCCAAATTTGCCCAA
AAAACTCATCTCGCCAAACACTTACTCGCTACGGGTGACCGCTTATTGGC
GGAAGCCAGCCCTTATGATATGCTTTGGGGGATTGACATTCCCGCTAGTC
ACCCGCACGCTGCCCATCCCTCTAAATGGAAAGGCAAAAACTTGCTCGGG
GACACTCTCATGAGAGTTCGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1188:12159..12629+

>mRNA_P-littoralis_Contig1188.1.1 ID=mRNA_P-littoralis_Contig1188.1.1|Name=mRNA_P-littoralis_Contig1188.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=471bp|location=Sequence derived from alignment at P-littoralis_Contig1188:12159..12629+ (Pylaiella littoralis U1_48)
CAGCGCCCGCGAGTACGTTTCCGACACCGTGCTTCTCTTTTGGAATCCAC
CATCGGTCTTCTCGCATTGGACTCCTTCGGACTTCGAGGTGCTAGGCCTG
CGGTATGTGTGCGGCGAGCCATATTTAATGAGGAAGAGGCTAAATTGTTC
GGTGACAGTGGTAGCTATGCAATCATGGCCTCCACTGACCCCAGCGTTCA
TAAGTCTCCCGGACGCGGCATCCGTCCGTTTGACTATGCTAAGTGGGAAA
CGCACCGTTCCGAAATTGCTCTCACGGGGAAATATGCCAAATTTGCCCAA
AAAACTCATCTCGCCAAACACTTACTCGCTACGGGTGACCGCTTATTGGC
GGAAGCCAGCCCTTATGATATGCTTTGGGGGATTGACATTCCCGCTAGTC
ACCCGCACGCTGCCCATCCCTCTAAATGGAAAGGCAAAAACTTGCTCGGG
GACACTCTCATGAGAGTTCGC
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