mRNA_P-littoralis_Contig74.127.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig74.127.1
Unique NamemRNA_P-littoralis_Contig74.127.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig74.127.1 vs. uniprot
Match: A0A6H5KAF3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAF3_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 2.550e-16
Identity = 46/121 (38.02%), Postives = 70/121 (57.85%), Query Frame = 1 
Query:    1 MTAEGSPSGGWSAFKNYYTPQADAEKERARQEWYDLRQGLNEAPKQFFSRVTVLESKLCRHGIVMEERETNTHVIRRLSSLFNTQAEILLANPFA-TRANIESVVLNKHGAMEMNSKRERE 360
            + A+GSPSGGW  F NYY P+A AEKER   +++ L   + E P+ +F R  VL S+L  HG++  + + N H++  LS  +  + +IL  +P   +R  IE  V + H   E+  +RE E
Sbjct:   94 IIADGSPSGGWKIFLNYYEPRARAEKERLSSQYHGLEMKVGETPQDYFGRFAVLRSRLAPHGVIFSDEDANAHMVYHLSDEYMME-KILTMSPIPRSREKIEKGVRDAHA--ELLRRREEE 211
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig74.127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KAF3_9PHAE2.550e-1638.02Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig74contigP-littoralis_Contig74:535296..535766 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size472
Hectar predicted targeting categoryother localisation
Exons1
Cds size471
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791533.6929054-CDS-P-littoralis_Contig74:535295..5357661680791533.6929054-CDS-P-littoralis_Contig74:535295..535766Pylaiella littoralis U1_48CDSP-littoralis_Contig74 535296..535766 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig74.127.1prot_P-littoralis_Contig74.127.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig74 535296..535766 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig74.127.1

>prot_P-littoralis_Contig74.127.1 ID=prot_P-littoralis_Contig74.127.1|Name=mRNA_P-littoralis_Contig74.127.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=157bp
MTAEGSPSGGWSAFKNYYTPQADAEKERARQEWYDLRQGLNEAPKQFFSR
VTVLESKLCRHGIVMEERETNTHVIRRLSSLFNTQAEILLANPFATRANI
ESVVLNKHGAMEMNSKREREMGEQLALVAAGRGIGGGGGNNGGGNGGHFM
GTPHGGT
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mRNA from alignment at P-littoralis_Contig74:535296..535766+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig74.127.1 ID=mRNA_P-littoralis_Contig74.127.1|Name=mRNA_P-littoralis_Contig74.127.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=471bp|location=Sequence derived from alignment at P-littoralis_Contig74:535296..535766+ (Pylaiella littoralis U1_48)
ATGACGGCGGAAGGTAGTCCCAGTGGAGGGTGGTCTGCGTTCAAGAATTA
CTACACTCCGCAGGCAGATGCTGAGAAAGAAAGAGCACGACAAGAATGGT
ATGATTTGCGCCAGGGACTGAACGAAGCACCAAAGCAGTTTTTCTCCAGG
GTAACAGTGCTGGAAAGTAAACTTTGTAGACATGGGATTGTAATGGAGGA
GAGAGAAACAAACACGCATGTGATCCGCCGGTTGTCGTCGCTGTTTAACA
CGCAAGCCGAAATTTTGCTCGCCAATCCGTTTGCTACCCGCGCGAATATA
GAGAGTGTGGTGCTCAACAAACATGGAGCCATGGAGATGAACTCGAAGAG
GGAGAGAGAGATGGGAGAACAGCTCGCCCTCGTTGCCGCAGGACGCGGGA
TCGGGGGCGGCGGAGGGAACAACGGCGGTGGCAACGGAGGACACTTCATG
GGGACACCGCATGGAGGGACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig74:535296..535766+

>mRNA_P-littoralis_Contig74.127.1 ID=mRNA_P-littoralis_Contig74.127.1|Name=mRNA_P-littoralis_Contig74.127.1|organism=Pylaiella littoralis U1_48|type=CDS|length=471bp|location=Sequence derived from alignment at P-littoralis_Contig74:535296..535766+ (Pylaiella littoralis U1_48)
ATGACGGCGGAAGGTAGTCCCAGTGGAGGGTGGTCTGCGTTCAAGAATTA
CTACACTCCGCAGGCAGATGCTGAGAAAGAAAGAGCACGACAAGAATGGT
ATGATTTGCGCCAGGGACTGAACGAAGCACCAAAGCAGTTTTTCTCCAGG
GTAACAGTGCTGGAAAGTAAACTTTGTAGACATGGGATTGTAATGGAGGA
GAGAGAAACAAACACGCATGTGATCCGCCGGTTGTCGTCGCTGTTTAACA
CGCAAGCCGAAATTTTGCTCGCCAATCCGTTTGCTACCCGCGCGAATATA
GAGAGTGTGGTGCTCAACAAACATGGAGCCATGGAGATGAACTCGAAGAG
GGAGAGAGAGATGGGAGAACAGCTCGCCCTCGTTGCCGCAGGACGCGGGA
TCGGGGGCGGCGGAGGGAACAACGGCGGTGGCAACGGAGGACACTTCATG
GGGACACCGCATGGAGGGACG
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