mRNA_P-littoralis_Contig74.92.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig74.92.1
Unique NamemRNA_P-littoralis_Contig74.92.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig74.92.1 vs. uniprot
Match: D7FQY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQY1_ECTSI)

HSP 1 Score: 1065 bits (2755), Expect = 0.000e+0
Identity = 550/731 (75.24%), Postives = 605/731 (82.76%), Query Frame = 1
Query:    4 TRRRELLLAHLFAAPLVRETTVGGEENEPGGIVPIKQRNYSRERHVITKAMAEASRDIAFLSEFADGQNFLMNLTGCRVLHFTWNGDGDQEKVMFENTKGLAAPVTEDWLQNTCYNNRDQLPELVVLTAASAKLVARVFIRAGISNVVAVETSDDDDATLGFIHSFYLSLAQGFTLRDSFGAGVHSLPDGQEGRCVLLPDDGAHWISPFDDAESGSFTYRIPRSPRKM--SKAPTLSTLLGREIQVQEVYAHMVQHSKVITISGRPGIGKTEVALRACEYARERGLFVKTFFVPLQDKKTGAPITTLKEVAARIASVFGIVEQEVRDHTEGFLGCIQHKCGLINGDLLLVLDGCSPYFVSKSDEPIRLSSVVEQLCQRVSNLQYIVTIVTQVGIAKEKVVNIGRLSELAAAELFVASASRDVPVEELRGGMVVSGPQERSAECMRLFAGGVIMAALGCHPGAIIAASSMLKKWHLLTNEDDYLQFIAVQLRRYVELEHAFARRLHQCPQTHSDSVVERELGRQARERRSSRASE-------PPN------PS-----------PPGVGPGQ---SNGELWWRRALELHTGELGVFSQTIPWEALCKHSLAAYFLQTLGDEGRDRPLLSEDFQALGKNKDLWDPYCPPGNAQGASASQQGFLGTFWPWFEAATLLLKRTGCWGFQKFPVICGLTTTRSDGMKLLQGRPRGTFLLRLSSKPGALVLMHVKPMQ 2109
            TRR   LLAHLFAAPLVRE  VG EE E GGIV IKQ NY RER VIT+A+A+A+R IAF+SE ADG+NFLMNLTGCRVLHFTWNGDGDQEKV+FE   GLAAPVTEDWLQNTC   +D+LPELVVLTAASAKLVA VFIRAGISNVVAV+TS DD  TL F+ SFYLSLAQGFTLRDSF AGV SLPDGQE RCVLLP +G HW+SPFDDAESG+FTYR+P SP KM  SK   +S+  GREI VQEVY HMVQHSKVITISGRPGIGKTEVALRACEYARER LF++TFFV LQDK TG PITTLKEVAARIA+ FGI +QE++DHTEGFLGCIQHKCGL  GDLLLVLDGCSPYFV++ DE I+LSSVVEQLC RVSNLQYIVT+VTQVGIAKEKVVNIGRL ELAAAELFVASA R V VEELRGGMVVSGP  + AECMRLFAGGVIM+AL  HPGAI+A+S ML++WHLLTNEDDYLQ IAVQL+RY +LE  FARRL +CPQT SDSV+ERE GRQ+R  R SR S        PP+      PS           PP +   +   +NGE WWR ALE HTGE+G  SQTIPWEALC+HSLA+YF++ LGDEGRDRPLL++DF ALG N  LWDPY  PG+ QG  AS+Q FLGTFWPWF+AATLLLKRTGCWGFQK+PVICGL+TTR DGMKLLQGRP GTFLLRLSSKPGAL  M+VKPMQ
Sbjct:    9 TRRSGCLLAHLFAAPLVREVGVG-EEKEDGGIVGIKQENYGRERDVITRALADANRAIAFVSEVADGRNFLMNLTGCRVLHFTWNGDGDQEKVIFEKPNGLAAPVTEDWLQNTCGGQKDKLPELVVLTAASAKLVAGVFIRAGISNVVAVDTSGDDAVTLSFVRSFYLSLAQGFTLRDSFDAGVQSLPDGQEDRCVLLPANGEHWLSPFDDAESGTFTYRVPHSPSKMKMSKKKKISSFRGREIPVQEVYMHMVQHSKVITISGRPGIGKTEVALRACEYARERCLFIETFFVSLQDKTTGTPITTLKEVAARIANAFGISKQEIQDHTEGFLGCIQHKCGLQKGDLLLVLDGCSPYFVNERDEKIKLSSVVEQLCPRVSNLQYIVTVVTQVGIAKEKVVNIGRLGELAAAELFVASAPRKVTVEELRGGMVVSGPHVQLAECMRLFAGGVIMSALRRHPGAIVASSGMLEQWHLLTNEDDYLQDIAVQLQRYEKLEQEFARRLQECPQTQSDSVIEREWGRQSRPERPSRQSSSLVKDRCPPHHDPRRVPSIPRKQDASKSPPPALATTELRTTNGEFWWRLALEKHTGEVGAISQTIPWEALCRHSLASYFVEVLGDEGRDRPLLNDDFNALGNNPALWDPYRAPGSVQGGIASRQEFLGTFWPWFKAATLLLKRTGCWGFQKYPVICGLSTTRFDGMKLLQGRPAGTFLLRLSSKPGALAAMYVKPMQ 738          
BLAST of mRNA_P-littoralis_Contig74.92.1 vs. uniprot
Match: A0A1V9Z989_9STRA (SH2 domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z989_9STRA)

HSP 1 Score: 188 bits (477), Expect = 1.080e-46
Identity = 205/778 (26.35%), Postives = 335/778 (43.06%), Query Frame = 1
Query:   22 LLAHLFAAPLVRETTVGGEE----NEPGG----IVPIKQRNYSRERHVITKAMAEASRDIAFLSEFADGQNFLMNLT-GCRVLHFTWNGDGDQEKVMFENTKGLAAPVTEDWLQNTCYNNRDQLPE----LVVLTAASAKLVARVFIRAGISNVVAVETSDD--DDATLGFIHSFYLSLAQGFTLRDSFGAG-----VHSLPDGQEGRCVLLPDDGAHWISP-FDDAESGSFTYRIPRSPRKMSKAPTLSTLLGREIQVQEVYAHMVQHSKVITISGRPGIGKTEVALRACEYARERGLFVKTFFVPLQDKKTGAPITTLKEVAARIASVFGI-VEQEVRDHTEGFLGCIQHKCGLINGDL---------LLVLDGCSPYFVSKSDEPI---RLSSVVEQLCQRVSNLQYIVTIVTQVGIAK-------EKVVNIGRLSELAAAELFVASASRDVPVEELRGGMVVSGPQERSAECMRLFAGGVIMAALGCHPGAIIAASSMLKKWHLLTNEDDYLQFIAVQLRRYVELEHAFARRLHQCPQTHSDSVVERELGRQARERRSSRASEPPNPSP-----------PGVGPGQ----------------SNGELWWRRALELHTG-----ELGVFSQT--IPWEALCKHSLAAYFLQTLGDEGRDRPLLSEDFQALGKNKDLWDPYCPPGNAQGASASQQ-----GFLGTFWPWFEAATLLLKRTGCWGFQKFPVICGLTTTRSDGMKLLQGRPRGTFLLRLS-SKPGALVLMHVKPMQR 2112
            +  HL ++PLV   T    +    + P      + PI+  +   ER ++ + + E  + + + SE AD   F   ++ GCR LHF+  G G   KV+FEN    A  +++  L+          PE    LV ++A  ++ VA  F+ AG+ +VV V   D   D   + F  +FY +L  G ++  SF  G     + S+ D    +  LL  +G H  S  F D   G +    P  P     A      +GR I+V  VY  +V+ ++++ ++G PGIGKTEVAL++C+YA +R LF + FF+     K        + V +R+A  FG+ V+  V D  +  L  +   C  I   L         LLVLDGC+  F SK+        L S++ QL +RV +L  +VT  +++G          E+++ I RL  L AA LF   A R + + E+ G + V             F+ G++M ALG HP  I A + +L+   L  +E ++L ++   +   ++           CP           L + A   +S+    PP   P            G+ P Q                  G + W  A+    G     +L   + T  +P+E L +  +  +F   +     +RPL     + L  +  +W P        G S  ++          FW WFE   + +++T  W F+   ++ G  +  +    L    P GTFLLR S ++   LV++++   +R
Sbjct:    1 MFVHLHSSPLVARQTTSLPKPLNSSHPFSFSLDLQPIEILDVKEERRLLLQCLQECGKQVRWRSEVADVHTFRKVISYGCRALHFS--GHGVPGKVIFENGNCEAHFLSQKELKTLLLAGVQGSPENTMRLVFVSACHSESVAEAFVSAGVPHVVVVPKEDKVLDQKAMEFSKAFYTALLAGHSVYKSFEIGQVQADIVSIADHHRSKFKLL-GNGDHAASHLFSDIPLGRYQDLTPPLPLNECDA-VAEVFVGRSIEVHAVYTALVEGARMVCLTGPPGIGKTEVALQSCQYATDRYLFERIFFLRFTPAKAPTASALRQYVLSRLAKSFGVPVDAAVDDDGDEVLTKL---CDRIRDQLDSLGTAAKYLLVLDGCNAMFPSKALARTLLPELRSIISQLLRRVRSLSLLVTNDSRLGGGAGLDCGVGERIIPIERLPALDAALLFTVRAPRRLQLHEMGGDLGV-------------FSRGLVMDALGGHPRTICAVAQLLELRDLQHDEREFLDYLIPSVIAGLDPTSKQDLANDYCPLLPYGHARPPPLAKAA-SAKSAPLVAPPFEQPLRRHGSCFAADEGISPQQLQVLAVRQHARAFIASPEGCMVWAHAVVECEGRGAGRDLHAVAHTTAVPFEFLAQQ-IGRFFAAKVRQAAVERPLSGRCMEFLASSSLIWGP-------GGRSPKKERRVDMAMFQAFWTWFEPLIVCIQQTSVWAFKHPRLLHGFISKEASRAMLAATVP-GTFLLRFSETRKSCLVVVYLTASRR 748          
BLAST of mRNA_P-littoralis_Contig74.92.1 vs. uniprot
Match: T0RP06_SAPDV (SH2 domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RP06_SAPDV)

HSP 1 Score: 185 bits (469), Expect = 1.290e-45
Identity = 189/775 (24.39%), Postives = 337/775 (43.48%), Query Frame = 1
Query:   22 LLAHLFAAPLV-RETTVGGEENEPG-------GIVPIKQRNYSRERHVITKAMAEASRDIAFLSEFADGQNFLMNLT-GCRVLHFTWNGDGDQEKVMFENTKGLAAPVTEDWLQNTCY-----NNRDQLPELVVLTAASAKLVARVFIRAGISNVVAVETSDD--DDATLGFIHSFYLSLAQGFTLRDSFGAG-----VHSLPDGQEGRCVLLPDDGAHWISP-FDDAESGSFTYRIPRSPRKMSKAPTLSTLLGREIQVQEVYAHMVQHSKVITISGRPGIGKTEVALRACEYARERGLFVKTFFVPLQDKKTGAPITTLKEVAARIASVFGIV---------EQEVRDHTEGFLGCIQHKCGLINGDLLLVLDGCSPYFVSKSDEP---IRLSSVVEQLCQRVSNLQYIVTIVTQVGIAK-------EKVVNIGRLSELAAAELFVASASRDVPVEELRGGMVVSGPQERSAECMRLFAGGVIMAALGCHPGAIIAASSMLKKWHLLTNEDDYLQFIAVQLRRYVE--------------LEHAFARRLHQCPQTHSDSVVERELGRQARERRSSRASEPPNP-----SPPGVGPGQ----------------SNGELWWRRAL---ELHTGEL-GVFSQTIPWEALCKHSLAAYFLQTLGDEGRDRPLLSEDFQALGKNKDLWDP--YCPPGNAQGASASQQGFLGTFWPWFEAATLLLKRTGCWGFQKFPVICGLTTTRSDGMKLLQGRPRGTFLLRLS-SKPGALVLMHV 2097
            +  HL ++PLV R+T    +   P         + PI+  +   ER ++ + + E ++ + + SE AD   F   ++ GCR LHF+  G G   KV+FEN    A  +++  L+          + +    LV ++A  ++ VA  F+ AG+ +VV V   D   D   + F  +FY +L  G ++  +F  G     + S+ D  + +  LL  +G H  S  F D   G +    P  P     A      +GR I+V   Y  +V+ ++++ ++G  GIGKTEVAL+ C+YA +R LF + FF+      T + ++  + +  R+A  F +          ++ +   T+     ++      +   LLV+DGC+  F++K+  P    +L SV+ QL +RV +L  ++T  +++G          E+++ I  L  + AA LF   A R + + E+ G +               F+ GV+M ALG HP  I A + +L+   L  +E ++L ++   +   ++              L +  AR  H   ++ S  V   ++      +  S      +      +  G+ P Q                  G + W  A+   E  T  + G  +  +P+E L +  ++ +F   +     +RPL S   + L  +  +W     CP       +A        FW WFE   + +++T  W F+   ++ G  +  +    LL     GTFLLR S ++   LV+ ++
Sbjct:    1 MFVHLHSSPLVVRQTASLPKPLNPAHPFSFSLDLQPIEILDVKEERRLLLQCLQECNKQVCWRSEVADVHTFRKVISYGCRALHFS--GHGVPGKVIFENGTCEAHFLSQQELKTLLLAGVQGTSPENTMRLVFVSACHSESVAEAFVSAGVPHVVVVPKEDKVLDQKAMEFSKAFYTALLAGHSVYKAFEIGQVQADIVSIADHHQSKFKLL-GNGDHARSHLFSDLALGKYQDLTPPLPINECDA-VAEVFVGRSIEVHACYTALVEGARMVCLTGPAGIGKTEVALQTCQYATDRYLFARIFFLRFALATTPSSLSLRQYLMGRLAKSFNVPLSDETDVDSDEALEKLTDRIRDKLESSASSQSTKYLLVMDGCNALFLNKALAPGLMPQLRSVISQLLRRVRSLSLLLTSDSRLGGGTGMDCGVGERIIPIEHLPPMDAALLFTVRAPRRLQIHEMGGDL-------------HAFSRGVVMDALGGHPRTICAVAQLLEVRDLQRDEREFLHYLIPSVIAGLDPSSKQDLANDYCPLLPYGHARHPHGLVKSASSRVASAQMDPTPLRKHGSFLDRRTDAGGTEVATGGMSPQQLLVFAVRQHARAHISSPEGCVVWAHAVVEYEASTPHVDGRRTTAVPFELLAQQ-ISRFFASKVRQAAVERPLSSRCMEFLASSSLIWGAPGRCPKTKE---NAVDVAMFAAFWSWFEPLIVCIQKTNVWAFKHPRLLHGFISKEASKAMLLATNAPGTFLLRFSETRQSCLVVAYL 754          
BLAST of mRNA_P-littoralis_Contig74.92.1 vs. uniprot
Match: A0A024US28_9STRA (SH2 domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024US28_9STRA)

HSP 1 Score: 181 bits (458), Expect = 3.910e-44
Identity = 210/794 (26.45%), Postives = 333/794 (41.94%), Query Frame = 1
Query:   22 LLAHLFAAPLV---RETTVGGEEN------EPGGIVPIKQRNYSRERHVITKAMAEASRDIAFLSEFADGQNFLMNLT-GCRVLHFTWNGDGDQEKVMFENTKGLAAPVTEDWLQNTCYNNRDQLPE----LVVLTAASAKLVARVFIRAGISNVVAVETSDD--DDATLGFIHSFYLSLAQGFTLRDSFGAG-----VHSLPDGQEGRCVLLPDDGAHWISP-FDDAESGSFTYRIPRSPRKMSKAPTLSTLLGREIQVQEVYAHMVQHSKVITISGRPGIGKTEVALRACEYARERGLFVKTFFVPLQDKKTGAPITTLKEVAARIASVFGIVEQEVRDHTEGFLGCIQHKCGLINGD----LLLVLDGCSPYFVSKSDEPIRL---SSVVEQLCQRVSNLQYIVTIVTQVGIAK-------EKVVNIGRLSELAAAELFVASASRDVPVEELRGGMVVSGPQERSAECMRLFAGGVIMAALGCHPGAIIAASSMLKKWHLLTNEDDYLQFIA-------------------VQLRRYVELEHAFARRLHQCPQTHSDSV------VERELG---------RQARERRSSRASEPPNPSPPG-VGPGQ----------------SNGELWWRRALE--------------LHTGELGVFSQTIPWEALCKHSLAAYFLQTLGDEGRDRPLLSEDFQALGKNKDLWDPYCPPGNAQGASASQQGFLGTFWPWFEAATLLLKRTGCWGFQKFPVICGLTTTRSDGMKLLQGRPRGTFLLRLS-SKPGALVLMHV 2097
            +  HL ++PLV     +++G   N            PI+  +   ER ++ + + E  + I + SE AD   F   ++ GCR LHF+  G G   KV+FE+    A  +++D L+          PE    LV ++A  ++ VA  F+ AG+ +VV V   D   D   + F  +FY +L  G ++  SF  G     + ++ D  + R  LL   G H  S  F D   G +    P  P     A      +GR ++V  V+  + + ++++ + G  G+GKTE+AL+AC+YA ER LF + FF+    + T +  +    V AR+A   GI +    D  +G    ++ K   I  D     LLVLDGC+  F SK +E  +L    +++ QL +RV +L  ++T   ++G          E++++I  +    AA LF   A R + V E+ GG+               FA   IM ALG H   I A + +L+   L  +E ++L ++                      L  Y         R     QTH D        +E +L            +    S  +S P + S  G + P Q                  G + W  A+                H  E+   +  +P+E L +  ++ +F   L  E   RPL +     L  +  +W       NA+G     Q F   FW WFE     +K +  WGF K P +     ++S    +L+    GTFLLR S +KP  LV++ V
Sbjct:    1 MFVHLHSSPLVVRQSSSSLGNSVNANCQYGSNNDFQPIEILDVKEERRLLLQCLQECGKQIQWRSEVADVHTFRKVVSHGCRALHFS--GHGVPGKVIFESATCEAHFLSQDELKTLLLAGDQSRPENAMRLVFVSACHSESVAEAFVSAGVPHVVVVPKEDKVLDQKAMEFSKAFYTALLAGHSVSKSFEIGQVQADIVTVSDTHQSRFKLL-GTGNHATSHLFSDLPPGMYEDLTPPLPINECDA-VAEAFIGRSLEVHAVFTALAEGARMVCLVGDAGMGKTEIALQACQYATERHLFERIFFL----RWTTSATSLTSYVLARLAKCVGISQPPTND-LDGLCELLRGKLDAIRPDKRLNFLLVLDGCNHLF-SKPNERNQLPQFQAILSQLLRRVRSLSLLLTSTNRLGGGTGLDCGVGERIISIEPMPPWDAALLFTVRAPRRLQVHEMGGGLAP-------------FAKSSIMEALGGHARTICAVAQLLENHDLARDEGEFLHYLIPAIIAGLDPASKQHFSNDYCPLLPYTASSKKAPTRPPGASQTHDDLHHLSNLHIESKLSPTPLHPPSLHASISVASQMSSSPLSSSTSGGLSPQQLQLFAIKRRVEGSIASPEGCMIWSHAVVEFNKSTQNSSAFDLRHVREVAAIN-AVPFEYLGQQ-VSRFFASQLRQEAVLRPLSTRCMDFLSSSDRIWGRPGMSPNARGGFVDVQMFR-AFWTWFEPLLSCIKTSRLWGF-KHPRLLHGFISKSSCQNMLRPCVPGTFLLRFSETKPSCLVVVFV 767          
BLAST of mRNA_P-littoralis_Contig74.92.1 vs. uniprot
Match: W4HDL0_9STRA (SH2 domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HDL0_9STRA)

HSP 1 Score: 179 bits (454), Expect = 1.070e-43
Identity = 198/780 (25.38%), Postives = 335/780 (42.95%), Query Frame = 1
Query:   22 LLAHLFAAPLVRETTVGGEEN-----EPGGIV----PIKQRNYSRERHVITKAMAEASRDIAFLSEFADGQNFLMNLT-GCRVLHFTWNGDGDQEKVMFENTKGLAAPVTEDWLQNTCYNNRDQLPE----LVVLTAASAKLVARVFIRAGISNVVAVETSDD--DDATLGFIHSFYLSLAQGFTLRDSFGAG---VHSLPDGQEGRCVLLPDDGAHWISP-FDDAESGSFTYRIPRSPRKMSKAPTLSTLLGREIQVQEVYAHMVQHSKVITISGRPGIGKTEVALRACEYARERGLFVKTFFVPLQDKKTGAPITTLKEVAARIASVFGIVEQEVRDHTEGFLGCIQHKCGLINGD----LLLVLDGCSPYFVSKSDEPIRLSSV---VEQLCQRVSNLQYIVTIVTQVGIAK-------EKVVNIGRLSELAAAELFVASASRDVPVEELRGGMVVSGPQERSAECMRLFAGGVIMAALGCHPGAIIAASSMLKKWHLLTNEDDYLQFIAVQLRRYVELEHAFARRLHQCP-----------------QTHSDSVVERELGRQARERRSSRASEPP---------NPSPPGVGPGQ----------------SNGELWWRRAL---------ELHTGELGVFSQTIPWEALCKHSLAAYFLQTLGDEGRDRPLLSEDFQALGKNKDLWDPYCPPGNAQGASASQQGFL-----GTFWPWFEAATLLLKRTGCWGFQKFPVICGLTTTRSDGMKLLQGRPRGTFLLRLSSKPGALVLM 2091
            +  HL ++PLV   +     N      P G+     PI+  +   ER ++ + + E  + + + SE AD   F   ++ GCR LHF+  G G   KV+FE+    A  +++  L+          PE    LV ++A  ++ VA  F+ AG+ +VV V   D   D   + F  +FY +L  G ++  SF  G    + + D  + +  LL   G H  S  F D   G +    P  P     A      +GR ++V  V+  + + ++++++ G  G+GKTEVAL+AC+YA +R LF + FF+ L        +T  + V  R+A  FG++ Q   +  +G    I+ +   +  D     LLVLDGC+ Y ++  +E  +LS++   + QL +RV +L  +VT  T++G          E+++ I  L    AA LF   A R + V E+ GG+               FA   IM ALG HP  I A + +L+   L  +E ++L ++   +   ++           CP                 +TH D +V       A          PP          P+  G+ P Q                S G + W  A+          +   ++   + ++P+E + +  ++ YF   +  +   RPL +   + L  +  +W      G A  +  +++G +     G FW WF+     +K +  WGF K P +     ++S  + +L     GTFLLR S    + V++
Sbjct:    1 MFVHLHSSPLVVRQSCSPLSNPINATRPFGLSSDFQPIEILDVKEERRLLLQCLQECGKQVKWRSEVADVHTFRKVISHGCRALHFS--GHGVPGKVIFESATCEAHFLSQQELKTLLLAGDQPCPESAMRLVFVSACHSESVAEAFVSAGVPHVVVVPKEDKVLDQKAMEFSKAFYTALLAGHSVLKSFEIGQVQANIVTDTHQSKFKLL-GCGNHAASHLFSDLPPGPYEDLTPPLPVNECDA-VAEAFIGRSLEVHAVFTALAEGARMVSLVGDAGMGKTEVALQACQYATDRHLFERVFFLRLSAVPPAPNLT--RYVLTRLAKCFGLLVQG--NDLDGLCEHIRDQLDALKADKRLTFLLVLDGCN-YLLTNPNERSQLSTIQAILSQLLRRVRSLSLLVTSTTRLGGGAGLDCGVGERIIPIEPLPPWDAALLFTLRAPRRLQVHEMGGGLAP-------------FAQSQIMDALGGHPKTICAVAQLLENHDLSRDEGEFLHYLIPAVIAGLDPASKQHFSTDYCPLLPYTVSSKKEPPSDMSRTHDDKLVPVAALPIA-------CPPPPLHQXXSSSSTPASDGLSPQQLQLFAIKRQVEGSIASSEGCMIWAHAVVEFNKSTASSVDVCQVAALT-SVPFEFIGQQ-VSRYFASKIRQDAVLRPLSTRCMEFLSSSDRIW------GRAGVSPNTRRGLVDLDMFGAFWTWFQPLLSCIKTSQLWGF-KHPRLLHGFISKSSCVNMLSPCVPGTFLLRFSETKASCVVV 742          
BLAST of mRNA_P-littoralis_Contig74.92.1 vs. uniprot
Match: A0A1W0AAB8_9STRA (SH2 domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0AAB8_9STRA)

HSP 1 Score: 171 bits (433), Expect = 6.530e-41
Identity = 201/820 (24.51%), Postives = 337/820 (41.10%), Query Frame = 1
Query:   22 LLAHLFAAPLV-RETTVGGEE-------NEPGGIVPIKQRNYSRERHVITKAMAEASRDIAFLSEFADGQNFLMNLT-GCRVLHFTWNGDGDQEKVMFENTKGLAAPVTEDWLQNTCYNNRDQLPE----LVVLTAASAKLVARVFIRAGISNVVAVETSDD--DDATLGFIHSFYLSLAQGFTLRDSFGAG-----VHSLPDGQEGRCVLLPDDGAHWISP-FDDAESGSFTYRIPRSPRKMSKAPTLSTLLGREIQVQEVYAHMVQHSKVITISGRPGIGKTEVALRACEYARERGLFVKTFFVPLQDKKTGAPITTLKEVAARIASVFGI------VEQEV--------RDHTEGF--LGCIQHKCGLINGDLLLVLDGCSPYFVSKSDEPI---RLSSVVEQLCQRVSNLQYIVTIVTQVGIAK-------EKVVNIGRLSELAAAELFVASASRDVPVEELRGGMVVSGPQERSAECMRLFAGGVIMAALGCHPGAIIAASSMLKKWHLLTNEDDYLQFIAVQL--------------------------RRYVELEHAFARRLHQCPQTHSDSVVERELGRQARERRSSRASEPPNPSPPGVG-----------------PGQ----------------SNGELWWRRALELHTGELGVFSQTIPWEA---------LCKHSLAAYFLQTLGDEGRDRPLLSEDFQALGKNKDLWDPYCPPGNAQGASASQQ-------GFLGTFWPWFEAATLLLKRTGCWGFQKFPVICGLTTTRSDGMKLLQGRPRGTFLLRLS-SKPGALVLMHVKPMQR 2112
            +  HL ++PLV R+TT   +        +    + PI+  +   ER ++ + + E  + + + SE AD   F   ++ GCR LHF+  G G   KV+FEN    A  +++  L+          PE    LV ++A  ++ VA  F+ AG+ +VV V   D   D   + F  +FY +L  G ++  +F  G     + S+ D  + +  LL  +G H  S  F D + G +    P  P     A      +GR I+V  VY  +V+ ++++ ++G  GIGKTE+AL+ C+YA +R LF + FF+     K+       + V  R+A  F +      V++EV        R+  + F  +     KC       LLV+DGC+  F +K+        L S++ QL +RV +L  ++T   + G          E+++ I RL  + AA LF   A R + + E+ G +              +F+ GVIM ALG HP  I A + +L+   L  +E ++L F+   +                          RR   L  A + +   C   H+D+         A  R+ S   +P + S   V                  P Q                  G + W  A+  +     +F   +                  ++ +F   +     +RPL S   + L  +  +W         QG S  +        G  G FW WFE   + ++++  W F+   ++ G  +  +    L    P GTFLLR S ++   LV++++   +R
Sbjct:    1 MFVHLHSSPLVARQTTSVSKPLSTSCPFSFSSDLQPIEILDVKEERRLLLQCLQECGKQVCWRSEVADVHTFRKAVSYGCRALHFS--GHGVPGKVIFENGSCEAHFLSQQELKTLLLAGVQGSPENTMRLVFVSACHSESVAEAFVSAGVPHVVVVPKEDKVLDQKAMEFSKAFYTALLAGHSVYKAFEIGQVQADIVSIADHHQSKFKLL-GNGDHARSHLFSDIQPGKYHDLTPVLPVNECDA-VAEVFVGRSIEVHAVYTALVEGARMVCLTGPAGIGKTEIALQCCQYATDRYLFQRIFFLRFTAPKSSNSFR--QYVLQRLAKSFCVPIPENEVDEEVLEQLCERIREKVDAFGSVSTTPAKC-------LLVIDGCNALFATKAQTTSLMPELRSIISQLLRRVRSLSLLLTSDYRFGGGTGMDCGVGERIIPIERLPPMDAALLFTVRAPRRLQIHEMGGDL-------------EMFSRGVIMEALGGHPRTICAVAQLLELRDLKRDEREFLNFLIPAVIAGLDPSSRQDFANDYCPLLPYGHSHRRPPTLSKAASSKSTACLDLHNDTP--------APLRKHSSFFQPKHDSEQTVSIESLSLHEGHNGDHSMSPQQLQVFAIRSHVQSYITSPEGCMIWAHAVVEYKQSPTIFDARLIHNVANTQTIPFEFIAQQISRFFASKVRQAAVERPLSSRCMEFLSSSTLIW-------GKQGLSPKKDRRGYVDIGMFGAFWSWFEPLIVCIQKSQVWAFKHPRLLHGFISKEASKAMLSNTVP-GTFLLRFSETRKSCLVVVYMTSSRR 778          
BLAST of mRNA_P-littoralis_Contig74.92.1 vs. uniprot
Match: W7U5S9_9STRA (Sh2 domain containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U5S9_9STRA)

HSP 1 Score: 150 bits (380), Expect = 3.810e-34
Identity = 153/514 (29.77%), Postives = 240/514 (46.69%), Query Frame = 1
Query:   25 LAHLFAAPLVRETTVGGEENE----PGGIVPIKQRNYSRERHVITKAMAEASRDIAFLSEFADGQNFLMNLT-GCRVLHFTWNGDGDQEKVMFENTKGLAAP-VTEDWLQNTCYNNRDQLPELVVLTAASAKLVARVFIRAGISNVVAV--ETSDDDDATLGFIHSFYLSLAQGFTLRDSF-----GAGVHSLPDGQEGRCVLLPDDGAHWISPFDDAESGSFTYRIPRSPRKMSKAPTLSTLLGREIQVQEVY---AHMVQHSKVITISGRPGIGKTEVALRACEYARERGLFVKTFFVPLQDK--KTGAPITTLKEVAARIASVFGIVEQEVRDHTEGFLGCIQHKCGLINGDLLLVLDGCSPYFVSKSDEPIRLSSVVEQLCQRVSNLQYIVTIVTQV--------GIAKEKVVNIGRLSELAAAELFVASASRDVPVEELRGGMVVSGPQERSAECMRLFAGGVIMAALGCHPGAIIAASSMLKKWHLLTNEDDYLQFIAVQLRRYVELE 1488
            L +L++APLV +   GG+  E     G  + I Q    R +H +     +A R I F +E A  +N    LT GCR+LH+T  G G    ++FE  K +    V         +       +LV ++A  +++V R FI AG+ +VVA+  +    D A   F   FYLS+A G T+R +F      A   +    ++ + +LLP DG H ++ FDDAE G F    P  P   +  P     +GR +  QEV    + + Q ++ IT+ GRPG+GKT +A + C+Y  ER  F   + VPL+ K  ++    T  K + A I       E+E+      FL   +H  G +    ++VLDG   +F ++S+    L  V+  L  R+  L  +VT    V          + EKVV++G LS++A A +    A     +EE+     +S P     E     A   ++  L  HP AI+  + +L+  H L +  D  +   V   + VE++
Sbjct:   63 LGYLYSAPLVHKA--GGQAKELDMQDGMHIDIGQ-ELGRLKHTLH----DAQRRILFRAEVATVKNCRKLLTIGCRMLHYT--GIGKPSCLIFEKEKPVGETNVLSIETLTELFAAGGVRTQLVFVSARHSEIVGRAFIAAGVRHVVAMKWDAKVSDRAACIFAEFFYLSIAMGRTVRQAFEVASTAAVTETGVSSEDEQFLLLPADGEHDLAVFDDAEMGEFVDESP-PPVPNTCDPPPVPFVGRNVAAQEVIGLLSMVSQGNRCITVRGRPGVGKTALASKVCQYLAERNQFDAIYMVPLRRKEYRSYEKETLCKVIGAAIGFEDASNEREIV-----FLLQDKHPSGRV----IMVLDGPDRFF-NRSNS---LVQVLSYLLSRIHGLHLLVTAEGSVLGSGSGRLESSSEKVVHLGPLSDVATAHMLANIAPPGFDLEEM-----MSRPYATREEAYAELAASPVIRELRGHPKAIVMFAPLLED-HRLEDLYDKAKQCYVDASQVVEVD 547          
BLAST of mRNA_P-littoralis_Contig74.92.1 vs. uniprot
Match: K8YZD6_NANGC (Sh2 domain containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YZD6_NANGC)

HSP 1 Score: 128 bits (321), Expect = 2.780e-28
Identity = 113/371 (30.46%), Postives = 178/371 (47.98%), Query Frame = 1
Query:  370 ELVVLTAASAKLVARVFIRAGISNVVAV--ETSDDDDATLGFIHSFYLSLAQGFTLRDSF-----GAGVHSLPDGQEGRCVLLPDDGAHWISPFDDAESGSFTYRIPRSPRKMSKAPTLSTLLGREIQVQEVY---AHMVQHSKVITISGRPGIGKTEVALRACEYARERGLFVKTFFVPLQDK--KTGAPITTLKEVAARIASVFGIVEQEVRDHTEGFLGCIQHKCGLINGDLLLVLDGCSPYFVSKSDEPIRLSSVVEQLCQRVSNLQYIVTIVTQV--------GIAKEKVVNIGRLSELAAAELFVASASRDVPVEELRGGMVVSGPQERSAECMRLFAGGVIMAALGCHPGAIIAASSMLKKWHL 1422
            +LV ++A  +++V R FI AG+ +VVA+  +    D A   F   FYLS+A G T+R +F      A   +    ++ + +LLP DG H ++ FDDAE G F    P  P   +  P     +GR +  QEV    + + Q ++ IT+ GRPG+GKT +A + C+Y  ER  F   + VPL+ K  ++    T  K + A I       E+E+      FL   +H  G +    ++VLDG   +F ++S+    L  V+  L  R+  L  +VT    V          + EKVV++G LS++A A +    A     +EE+     +S P     E     A   ++  L  HP AI+  + +L+   L
Sbjct:   33 QLVFVSARHSEIVGRAFIAAGVRHVVAMKWDAKVSDRAACIFAEFFYLSIAMGRTVRQAFEVASTAAVTETGVSSEDEQFLLLPADGEHDLAVFDDAEMGEFVDESP-PPVPNTCDPPPVPFVGRNVAAQEVIGLLSMVSQGNRCITVRGRPGVGKTALASKVCQYLAERNQFDAIYMVPLRRKEYRSYEKETLCKVIGAAIGFEDASNEREIV-----FLLQDKHPSGRV----IMVLDGPDRFF-NRSNS---LVQVLSYLLSRIHGLHLLVTAEGSVLGSGSGRLESSSEKVVHLGPLSDVATAHMLANIAPPGFDLEEM-----MSRPYATREEAYAELAASPVIRELRGHPKAIVMFAPLLEDHRL 384          
BLAST of mRNA_P-littoralis_Contig74.92.1 vs. uniprot
Match: A0A067D2G1_SAPPC (SH2 domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067D2G1_SAPPC)

HSP 1 Score: 129 bits (323), Expect = 2.130e-27
Identity = 147/612 (24.02%), Postives = 252/612 (41.18%), Query Frame = 1
Query:  487 FIHSFYLSLAQGFTLRDSFGAG-----VHSLPDGQEGRCVLLPDDGAHWISP-FDDAESGSFTYRIPRSPRKMSKAPTLSTLLGREIQVQEVYAHMVQHSKVITISGRPGIGKTEVALRACEYARERGLFVKTFFVPLQDKKTGAPITTLKEVAARIASVFGIVE-QEVRDH--------TEGFLGCIQHKCGLINGDLLLVLDGCSPYFVSKSDEP---IRLSSVVEQLCQRVSNLQYIVTIVTQVGIAK-------EKVVNIGRLSELAAAELFVASASRDVPVEELRGGMVVSGPQERSAECMRLFAGGVIMAALGCHPGAIIAASSMLKKWHLLTNEDDYLQFIAVQLRRYVELEHAFARRLHQCPQTHSDSVVERELGRQARERRSSRASEPP------------------NPSPPGVGPGQ----------------SNGELWWRRAL---ELHTGELGVFSQT-IPWEALCKHSLAAYFLQTLGDEGRDRPLLSEDFQALGKNKDLWDPYCPPGNAQGAS------ASQQGFLGTFWPWFEAATLLLKRTGCWGFQKFPVICGLTTTRSDGMKLLQGRPRGTFLLRLS-SKPGALVLMHVKPMQR 2112
            F  +FY +L  G ++  +F  G     + S+ D  + +  LL  +G H  S  F D   G +    PR P     A      +GR I+V   Y  +V+ ++++ ++G  GIGKTEVAL+ C+YA +R LF + FF+      +  P+     +  R+A  FG+    E  D         T+     ++      +   LLV+DGC+  F +K+  P    +L +++ QL +RV +L  ++T  +++G          E+++ I  L  + AA LF   A R + + E+ G +               F+ GV+M ALG HP  I A + +L+   L  +E ++L ++   +   ++           CP           L + A  R SS   +P                     +  G+ P Q                  G + W  A+   E  T  +     T +P+E L +  ++ +F   +     +RPL S   + L  +  +W        A G S      A        FW WFE   + +++T  W F+   ++ G  +  +    L+     GTFLLR S ++   LV+ ++   +R
Sbjct:    3 FSKAFYTALLAGHSVYKAFEIGQVQADIVSIADHHQSKFKLL-GNGDHARSHLFSDLAVGEYQDLTPRLPVNECDA-VAEVFVGRSIEVHAAYTALVEGARMVCLTGPAGIGKTEVALQTCQYATDRYLFQRIFFLRFA-LPSSLPLRPY--LMGRLAKSFGVTSADEASDDSDDAMEKLTDRIRDKLEASASSQSTKYLLVMDGCNALFPNKALAPGLMPQLRTIISQLLRRVRSLSLLITSDSRLGGGTGMDCGVGERIIPIEHLPPMDAALLFTVRAPRRLQIHEMGGDL-------------HAFSRGVVMDALGGHPRTICAVAQLLEVRDLQRDEREFLHYLIPSVIAGLDPSSKQDLANDYCPLLPYGHARHPALAKSASSRVSSALLDPAPLRKHGSFLDRRNDAGESGTATGGMSPQQLLVFAVRQHARSHIASPEGCVVWAHAVVEYEASTPHVDARRATAVPFELLAQQ-ISRFFASKVRQAAVERPLSSRCMEFLASSSLIW-------GATGRSPKTMDNAVDVSMFAAFWSWFEPLIVCIQKTNVWAFKHPRLLHGFLSKEASKAMLVATNAPGTFLLRFSETRQSCLVVAYLTASRR 588          
BLAST of mRNA_P-littoralis_Contig74.92.1 vs. uniprot
Match: A0A3R7CC34_9STRA (SH2 domain-containing protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7CC34_9STRA)

HSP 1 Score: 119 bits (298), Expect = 3.560e-24
Identity = 96/321 (29.91%), Postives = 159/321 (49.53%), Query Frame = 1
Query:  229 GCRVLHFTWNGDGDQEKVMFENTKGLAAPVTEDWLQNTCYNNRDQLPE----LVVLTAASAKLVARVFIRAGISNVVAVETSDD--DDATLGFIHSFYLSLAQGFTLRDSFGAG---VHSLPDGQEGRCVLLPDDGAHWISP-FDDAESGSFTYRIPRSPRKMSKAPTLSTLLGREIQVQEVYAHMVQHSKVITISGRPGIGKTEVALRACEYARERGLFVKTFFVPLQDKKTGAPITTLKEVAARIASVFGIVEQEVRDHTEGFLGCIQHKCGLINGD----LLLVLDGCSPYFVSKSDEPIRLSS---VVEQLCQRVSN 1140
            GCR LHF+  G G   KV+FE+    A  +++  L+          PE    LV ++A  ++ VA  F+ AG+ +VV V   D   D   + F  +FY +L  G ++  SF  G    + + D  + +  LL   G H  S  F D  +G +    P  P     A      +GR ++V  V+  + + ++++++ G  G+GKTEVAL+AC+YA +R LF + FF+ L        +T  + V  R+A  FG++ Q   +  +G    I+ +   +  D     LLVLDGC+ Y ++  +E  +LS+   ++ Q+ Q + N
Sbjct:   74 GCRALHFS--GHGVPGKVIFESATCEAHFLSQQELKTLLLAGDQPCPESAMRLVFVSACHSESVAEAFVSAGVPHVVVVPKEDKVLDQKAMEFSKAFYTALLAGHSVLKSFEIGQVQANIVTDTHQSKFKLL-GCGNHAASHLFSDLPAGPYEDLTPPLPVNECDA-VAEAFIGRSLEVHAVFTALAEGARMVSLVGDAGMGKTEVALQACQYATDRHLFERIFFLRLSAVPPAPNLT--RYVLTRLAKCFGLLVQG--NDLDGLCEDIRDQLDALKADKRLTFLLVLDGCN-YLLTNPNERSQLSTTQTILSQVAQLLEN 385          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig74.92.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQY1_ECTSI0.000e+075.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1V9Z989_9STRA1.080e-4626.35SH2 domain-containing protein n=1 Tax=Achlya hypog... [more]
T0RP06_SAPDV1.290e-4524.39SH2 domain-containing protein n=1 Tax=Saprolegnia ... [more]
A0A024US28_9STRA3.910e-4426.45SH2 domain-containing protein n=1 Tax=Aphanomyces ... [more]
W4HDL0_9STRA1.070e-4325.38SH2 domain-containing protein n=2 Tax=Aphanomyces ... [more]
A0A1W0AAB8_9STRA6.530e-4124.51SH2 domain-containing protein n=1 Tax=Thraustothec... [more]
W7U5S9_9STRA3.810e-3429.77Sh2 domain containing protein n=2 Tax=Monodopsidac... [more]
K8YZD6_NANGC2.780e-2830.46Sh2 domain containing protein (Fragment) n=1 Tax=N... [more]
A0A067D2G1_SAPPC2.130e-2724.02SH2 domain-containing protein n=1 Tax=Saprolegnia ... [more]
A0A3R7CC34_9STRA3.560e-2429.91SH2 domain-containing protein n=7 Tax=Aphanomyces ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig74contigP-littoralis_Contig74:401919..418989 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog112098.XP_008612470.1
PFAMsCHAT,Laminin_G_3,SH2
Model size2116
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons17
Evalue2.12e-46
EggNOG OGs2CNGK@1|root,2QW5N@2759|Eukaryota
DescriptionSrc homology 2 domains
Cds size2115
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig74.92.1prot_P-littoralis_Contig74.92.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig74 401919..418989 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791532.299572-CDS-P-littoralis_Contig74:401918..4020671680791532.299572-CDS-P-littoralis_Contig74:401918..402067Pylaiella littoralis U1_48CDSP-littoralis_Contig74 401919..402067 +
1680791532.311016-CDS-P-littoralis_Contig74:410354..4104841680791532.311016-CDS-P-littoralis_Contig74:410354..410484Pylaiella littoralis U1_48CDSP-littoralis_Contig74 410355..410484 +
1680791532.3247757-CDS-P-littoralis_Contig74:411040..4111181680791532.3247757-CDS-P-littoralis_Contig74:411040..411118Pylaiella littoralis U1_48CDSP-littoralis_Contig74 411041..411118 +
1680791532.336612-CDS-P-littoralis_Contig74:411800..4118731680791532.336612-CDS-P-littoralis_Contig74:411800..411873Pylaiella littoralis U1_48CDSP-littoralis_Contig74 411801..411873 +
1680791532.3491588-CDS-P-littoralis_Contig74:412120..4122501680791532.3491588-CDS-P-littoralis_Contig74:412120..412250Pylaiella littoralis U1_48CDSP-littoralis_Contig74 412121..412250 +
1680791532.3624353-CDS-P-littoralis_Contig74:413264..4134301680791532.3624353-CDS-P-littoralis_Contig74:413264..413430Pylaiella littoralis U1_48CDSP-littoralis_Contig74 413265..413430 +
1680791532.373689-CDS-P-littoralis_Contig74:413787..4138741680791532.373689-CDS-P-littoralis_Contig74:413787..413874Pylaiella littoralis U1_48CDSP-littoralis_Contig74 413788..413874 +
1680791532.3866053-CDS-P-littoralis_Contig74:414145..4142981680791532.3866053-CDS-P-littoralis_Contig74:414145..414298Pylaiella littoralis U1_48CDSP-littoralis_Contig74 414146..414298 +
1680791532.4021153-CDS-P-littoralis_Contig74:415092..4152111680791532.4021153-CDS-P-littoralis_Contig74:415092..415211Pylaiella littoralis U1_48CDSP-littoralis_Contig74 415093..415211 +
1680791532.420841-CDS-P-littoralis_Contig74:415604..4156891680791532.420841-CDS-P-littoralis_Contig74:415604..415689Pylaiella littoralis U1_48CDSP-littoralis_Contig74 415605..415689 +
1680791532.4328043-CDS-P-littoralis_Contig74:415882..4159761680791532.4328043-CDS-P-littoralis_Contig74:415882..415976Pylaiella littoralis U1_48CDSP-littoralis_Contig74 415883..415976 +
1680791532.4507377-CDS-P-littoralis_Contig74:416255..4163571680791532.4507377-CDS-P-littoralis_Contig74:416255..416357Pylaiella littoralis U1_48CDSP-littoralis_Contig74 416256..416357 +
1680791532.4626455-CDS-P-littoralis_Contig74:416737..4168431680791532.4626455-CDS-P-littoralis_Contig74:416737..416843Pylaiella littoralis U1_48CDSP-littoralis_Contig74 416738..416843 +
1680791532.475554-CDS-P-littoralis_Contig74:417337..4173991680791532.475554-CDS-P-littoralis_Contig74:417337..417399Pylaiella littoralis U1_48CDSP-littoralis_Contig74 417338..417399 +
1680791532.488246-CDS-P-littoralis_Contig74:417709..4179721680791532.488246-CDS-P-littoralis_Contig74:417709..417972Pylaiella littoralis U1_48CDSP-littoralis_Contig74 417710..417972 +
1680791532.5046577-CDS-P-littoralis_Contig74:418219..4183661680791532.5046577-CDS-P-littoralis_Contig74:418219..418366Pylaiella littoralis U1_48CDSP-littoralis_Contig74 418220..418366 +
1680791532.518259-CDS-P-littoralis_Contig74:418818..4189891680791532.518259-CDS-P-littoralis_Contig74:418818..418989Pylaiella littoralis U1_48CDSP-littoralis_Contig74 418819..418989 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig74.92.1

>prot_P-littoralis_Contig74.92.1 ID=prot_P-littoralis_Contig74.92.1|Name=mRNA_P-littoralis_Contig74.92.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=705bp
MTRRRELLLAHLFAAPLVRETTVGGEENEPGGIVPIKQRNYSRERHVITK
AMAEASRDIAFLSEFADGQNFLMNLTGCRVLHFTWNGDGDQEKVMFENTK
GLAAPVTEDWLQNTCYNNRDQLPELVVLTAASAKLVARVFIRAGISNVVA
VETSDDDDATLGFIHSFYLSLAQGFTLRDSFGAGVHSLPDGQEGRCVLLP
DDGAHWISPFDDAESGSFTYRIPRSPRKMSKAPTLSTLLGREIQVQEVYA
HMVQHSKVITISGRPGIGKTEVALRACEYARERGLFVKTFFVPLQDKKTG
APITTLKEVAARIASVFGIVEQEVRDHTEGFLGCIQHKCGLINGDLLLVL
DGCSPYFVSKSDEPIRLSSVVEQLCQRVSNLQYIVTIVTQVGIAKEKVVN
IGRLSELAAAELFVASASRDVPVEELRGGMVVSGPQERSAECMRLFAGGV
IMAALGCHPGAIIAASSMLKKWHLLTNEDDYLQFIAVQLRRYVELEHAFA
RRLHQCPQTHSDSVVERELGRQARERRSSRASEPPNPSPPGVGPGQSNGE
LWWRRALELHTGELGVFSQTIPWEALCKHSLAAYFLQTLGDEGRDRPLLS
EDFQALGKNKDLWDPYCPPGNAQGASASQQGFLGTFWPWFEAATLLLKRT
GCWGFQKFPVICGLTTTRSDGMKLLQGRPRGTFLLRLSSKPGALVLMHVK
PMQRA
back to top

mRNA from alignment at P-littoralis_Contig74:401919..418989+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig74.92.1 ID=mRNA_P-littoralis_Contig74.92.1|Name=mRNA_P-littoralis_Contig74.92.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=17071bp|location=Sequence derived from alignment at P-littoralis_Contig74:401919..418989+ (Pylaiella littoralis U1_48)
ATGACACGACGTCGAGAGCTCTTGCTCGCCCATCTCTTTGCGGCTCCCCT GGTACGAGAAACTACAGTGGGTGGAGAGGAGAACGAGCCTGGCGGGATCG TGCCCATCAAACAGCGAAACTATTCCCGGGAGCGACATGTGATCACAAAG TAAGGCAGAGATAGACTTGTTGCTGTTGCAGCAACCCTGGTAGGGAGGTA CTTCGAAGTATGTACAGATGGCTCCTCGAGCCTGGCAAATGCGGATGCAC GGTTATGGTAGGGGTAGGAATAGGAGATAAATACAAAAAGGATCACGCGA CTAGCGTAGAGGGGGCTTGTCGGTTTCGAAGAAAAGCAAACGCGTACTGC CATAACCGGAAATATATCGTGGGGAGACACACCGGTCGCCCCGGTGGACT AGTGGTCCCTCGTTAACCACTAGATGCAGAGGAACGGGGGTTCGATTCCC GGTGAATGTGTTCCTTTGCTACTTTGAAAGCGGCTATGCTGTTAGTAAAA GCAGATTCGGCTTCGCCGACGAGGGTAGGAACCGCGGAACCCTGCTCGCG AGAAAAAATCTCACGCATGTACCGCAGAAGGAAGGTGGGGGTAACTCCTC CTGTGTTGACCTTCCTCCTGTGTGACCCCGTCGATGGGCCTAGCCTGTAG TTTGCAGACTAGTGTGCCAGAGAATATGGGATGACAACATAGTCTAAAGC CCCTATACTTGTACTTGTAAGAAGTACCACGTACGAGTTGCTGTATGATA TTATTTTTGTACCAGGTACTTTTTTTCTCGTACTACCTCGAAGGTTTAGG CCCTGTATTAACCCTTTGACCCCCCAGGGGTCTGAAAAAATAATCATGGA GCCAAAAATTTACTGATTCCGGTGCGCCGATGATTGGCGAATGGTGGACA GTCTCAAAAAAAAAAGTACTGATGTCTCTTTAAGACTCCCTGCTCTCTCC GGGTGAAAAAAGGGGTGTGACTTGATTATACACAGAAATCTGTCCCCAAT TTGCCCTGAAAAAAATGGGGACAGATTTCAGTCTAAAGCTACACCAAACT TTTTTGGGGGGGTCAACTACACAAAGGTTGTTTGTTTAGTTCTAAAGGAT GTTGCTTCAAAGGGATACTGCTGTATGCAAGGTAGCACGCAGCAATACCG CCACTTAGCATGGCAGATCAGGGTACCCCGCTCGATAACCACACAGGGTT CCACTCCGCGACATTCATTCAGGGTCTACAGCATCTCATCAGCAGCAGCA GCAAGCAGCAGCTGAACTAGCCTCTGAAGTCAAACATATCATGTAGGTTG CATGTGATCAACGCAAGGGTGTCGGCATATAATGGTACCCATGTGATGAT ACTCGTACGAGATCGCCGGGTAAGTTTATGAGCTTTCAAACGTGCGTGGC GCGATGTATCTGTTTGTAGTGTCGGCCCCCGTGCGCGTGGTGTGTGCCTC ACCAACCCACCGCACGACACATCATCAGCTAGCTGCTTGCTGCAGCATGC ACACAGCAGCAGCAGCAGAAGCAGAGTACCAAAAAAAAAAATAGTTGCAG AAATCAGGGTATGTATGTGAGTGCAGCAGTACGTCAGCATCATCAGCGTT TCATAGGAGCGGTACAGTAGTACCAGGTATAACATAGTCTATGTATCATG TCTCATGCGTATGTGTGCATGTTGTGTGCAATGCAGCAGGGAGTGTTGCC GGCATGAGGTAAGTGTGATACAAGATGATCGCCGTTGTGTCTACTATGCT GTCGGGCGCGCTTGCTCTCCCATAATAATAATAAAAAATAAAATGTGGCA CCGAGGCAGCCAACGATTGGTCGATCCACAAACATTCCATCGAGCGCACG GAACCACACCCAAAATACCTGTAGATAGGCGCCTTCAAAACCCAAGTCAC AAAAAAAAAACAGGTGTCCCCAAATTGTCCCCAATTGGGATTGGGGGGTT CAAAGGGTTAACGACAATCAGGAAATCAAAATTGGAAAGAATCAAAATCA AAATTGGTCTCTGATTGGTCGAGGCTCTCGAGACCTACCGACGACAATTT TGATTTCTTGGAAATCACCGGCAGACCAAAGAAGTCCAAAAAAACTTAAT TGCCAGGAAATCAAAATCAAAATTGGGGGTCTTAATCCGATCGAAGGCTT TCTGAACGATGTGGCTCGCGCACCACACACACGACAGACAAGCAGACAGA GGCACAGGGCACGCCGACGCAACCCACACCACACACACACAGAGAGAGGT GTGCCGTCGCACCAGGCATGTCAAAACCAGCACCACACCGAGAGCAGAAA AGACAGACAGACTCGCATGATGAGGCACCAACCAGACAACACCTAGAGCA GGACAACGACAGCCAAACAACAACAAACAGCAGACAGCCAGACGCGTACA GCAGTCTCGAGTCCATGATGAGGCAACACACACACAAACAAACAGACAGA CACACAAACAACGCGGTGTCTCTCAGCGACGTAGCATCAGCGTGCAGTGC TGCTCTGATACATGTATGTATCTGTACTGCTGCTGCTGTTGTTATGTTTA CAGCAGTGCCGATCGATGGTGACATCATAATCAATCAGAGGTTTTGGATC TCGGCGGCGTTTACAGGCCTCTACCAAGCTGGTCCGTTAATATGGCTCGC AGTGTTTTTCGTAAAATCAAACTTTGATTTTGCTATTTTGATTTTTCAAT TTTGATTTCCTGATTGTCGTGAACACAGGGCCTTATACTGTACAAAGTAC GAAGTTTACGTCAGTAAATTAAAATTCAACACGTGAGCGTACATCAGGAA CGCCGCGGAGCGTTTATCTGTCCGTGTGTACATACGTACATGGTATCCTA TCATTTGGTATACTGTATCGTCCGCACCAGCTCTCTGGGTCAATGTGATG AACAATAACAATTATAACATCCTGAAGATATTCACGAGAGGGGTAAAAAA GCAGCATGGTTCGTTCCCGTTTTCTCCGCCAGGATTGGTAGTGGATCGGT GTTAAGAAGCAATGTGCGTCAGGTGGCCGCTTCTCGAATAACTCCGTTCA GCCGTGTGCATGGCTGTTGAATGTTGTTGCAAGAGGAGTGGCTACGATCG GGTACCTCCTTTTAGTTTTTTTCAGTGACCGAAACTGCCCGAGAACACCA TCTCATTGGCCAGAACGCCAGAACCCTCCGCTATTCGGCGATGACAACTT CCCGCCGGGTGTGCCCAATTACGGATAGGAGGGTACCCGAATCTCTGAGC CACTTCTCCGAAACGGCCACAAATACAACGCCTCCCAGGTTCACCATATG TTACCGACGGTGGCGGCCAGGGACCAGAAAGAACGGAGATCATTCATAGT CATCATAAAAGCGAAGACGGCAAGCAGTTCTTCCACATTCATTCGCGCTC TCAAGACTCCTCTGCTGCCTCTGCTCTCTCTCGTTATCCCTTTCCCAACC AAAAGCTACTTCGGTATAGCAGCAGTAGTGGTAGTGTGGTACGAAACATG TAGCATAAACAGCGGCGAAGCAGCAGAGCGCATCCTTCTGCTCAGGTAAG GAGGGCACACAAAAATATTTTCTCTCTTTCCCTTCGGTAGAGGTAGAGGC GTCATACTAAACACTCAAACACATGCGGAGGCTAAACGCGAAAGCCCTAG GTTATTGCACCTCGAAGGCAGGCAGCACTACTGAAGGTCGCAGCCCAACC AGATTCATTTCCAGTCAAAGGATTTAGCGAAGGGCGTGATAGTAGCAGCA GAAGGGCTGCCGCCGCATTTTTGTCTTTTTTTCCCAGCGGATCCGTGTGT TTGCGTGCTGTATGTACGAAATACTGAAGAGACGAGAGTAAACATATGAT CAAGATGAATGACACAGATATGTTCGTTATGGTTTGGAGATGGAGAACAA CGAGAGAAGAGGCGGCAGAGAATTCGAGAGAGCGCGCAAATGAACGTTTG AAGAGAGAAGTTTTCTTCTTTTTTCCTCGCTCTAGGCCGCCGCCGTCGGT AGTAGATGATGAACCTGAAGTGGCGTTTGTGTATTGTCCGTTGGTCGAAG AGCCCGTGTATTTGTGGCCATTTCCGGGTAGTGGGTATGTGATCCGGGTA TCTTCCGCGGGTTGAGGAACGAACTCAGGCAACCATGATCACAAGAAAAG GACAAGCCGCTTGAGTACGATCTGAATAAGAACCCTCACATGTTTTATAG AGTGCTCGCGCACATATCTCGGGTGGCGGAACAGATGTCTGACGCAAATC TTGGTATCCGAAAGGTTTGTCAACGGTTATGTTGAGGTGCCGCATATTCC GGCAAATTTCAGCTACTGAAATACTGTCGTTCAGTTGGCTGTCCTTGGGA TGAGCACACATGTTTTCAGGCTGCGATAGGATTGTTGGGTATCCTACAGT GGGAAAACGGTTTGCCCGGGCCCATTGGAGGATTTGAATGTCACCGTTGT ACGCAGATGCCGAGCATACAAATGCGTTCCATGGGCAGGCGTTTGCCCTC GTCCACTGTAGGATACCCGACCATCGTCCGATCGCAGCCTGAAAACATGT GTGGTCATCCCAAGGACAGCCAACTGAACGACAGTATTTCAGTAGCTGTA ATTTGCCGGAATATGCGGCACCTCAACAAGTCCCTTGACAACCTTTCGGA TACCAAGATTTGCATCAGAAATCTGTTCCGCCACCCGAGATGTGTGCGCG AGGACTCTAAAAAACATTTGAGGGTTCTTGTTCAGATCGTACTAAAGCGG CTTGTCCTTTTCTTGTGACAATGGTTGCCTGAGTTCGTTCCTCAGCTCGT CCAAAACCCTGAGATGCACCAAGTCTAGACCTTCATCCTCTCCCGCGAAG GTTTTGTCGATCACGCGCTTGAAAACTTCATGCTTCATTGCGAACTTGGA GGCGGGGCACAGGAGTCTGAAGACGTCGTCGGTGTTCGCGAGCCTGAAAT GAATATGCCCGAGTATTCTTGTCATCGTGTGAATCTTGACGAGTTTATTG CGGACGTCTCCATGTCTCTGGTAATTGACTGTCTTAGATCGCCTTTCATC TAGTCGGCGGGAACGTTGCCATCGCCGGGTAGCAGAGAGTTCTGGCCGAT GATGCGGCGTTCTTAGGCGGTTTCTTATAACGTTGATTTTTCCGATCGAC TTTCCCCTAATTCCGATCTAGCATCCTGCAGCAGGAGATTTTCGATCCGC TGTTTTTACGGTGGTCGTTTTTCTCATGTTTTTTATTTTCAAGACTGCCA CGCAGGAAGCAGCAGCAGCAGCAACGGTGTTTTTTTCGTCCTCAGAACAA ATTTGTACTTTCGCTCATGACTCTCCAAAGAATGAGGCCCCGGCAATAAT AACGCCATCCCCTGTGAGCCGTGTGTATAGCTCTTCTCATGTGGTGATTG TTTTGAGCCCTCTAGGCGTGGGCAGACTCGCAACAAAGTTACTTGTCGAT GATGATGTGTGTCAAACACACGCGAAAACAAAGAAACCAAAAGAGCTGGC GCTGCTCCGCCCTGCAAGTCTTTTGCGCGTGGCACCGGTTTGCTGTCGAA CGGACGCAGCCACGACGATGACAAGACATCTGCCGTGAGCCGCGTGCACA GTACTTGTCGTGTTAACTATTTGGGTTAGGGTTACATCGGTACGTCCGCA AAAAACAGATTGCTTGTCTCAAACCACATGTAGAAACAATCAAGAAAGAC CTCCCGTTCGCTGCTGCTGTTTACAGCTCTATCTCTGGTGGTTGTTTACA ACATGATGTGATCGTCACGAGCAAACTTTTTGCGAGCCTGCCGATGCCTC GCGGGCCCAAACGGTCATCACCCGAGATGGACAATACACGCAGCTCACGG AAGACACCTTCTTTGTCGTTTTGTGGCTGCATTCGTTCGAGATGGGTGAA AAGGCAAACCGGTGGCAGGCGAAAAAGACCTGCTGCGCGGAGCCGTGTGG TGTGCCAGCAAACAGATGAACAACCAGACACCTGTAACACTCGACACGTA TATGGACAGCAGCAAAGCAGCAGCAGCAGCACCTCTCCTCCCCTGCTGTT GCTCTGCTTGCTTGGTGGTTGCTAGTGGCTTGTGATACGTGTATATACAT CCGTCTGTGTGTGTAGTGATGGTGGTACGTAAGACTTGTCACGAATGATA CATATGATTAAATACCACATTGAGAGAAAAGATCCCAGTACAACATTTCC GACCGCAAAAAAATATGTCGTAGTGCCGCAGAATCTGGCCATTATCTCGG ACGCACAGACACATGCAGCCACAAACATCACCCGAACAAAATAGAGAAAG GCACCCTGTAACGTTTTATTCATTTATTTTTATTTACACGTGCACTCACG AACGAATTCGCCACCAAGTCCGCATGGATTCGAAGCACTTAGTTCGAAGG TTCTCATTCGAACTCACACTTCGCTGCGCTCGTGGCCTGCTTCCCAAGAA AAGATTGCCAAGTCTCCAACACAGGACAAAAAAATTACCTATGTACTCGA AGTACTTCGTATAATTGTTTACTCAAACTCGAAGCAAACGTTTATACTCA CATTCGTCTCCAGCGCATGCTTTTTTTTTATGTCGGAAATACGTATGGTA CGCTAATTTCAACTTCGTCGAGGGTCTTCTATCTTCTCCAGTAGGCGGGG CGTTTCGTGGTGAATTTCAAGTTTTCCTAAACCTACTGGTTACACCGCAT CACACGGCACAGCCCAGCAGTACAGTGTACTCAGAGCATCCACGCGTCCG CAGAGAGAGTGGCCGCGATGCTCTATGCGCGAGGGTCCCTCTGCTTGATT GTTTGAAAAGTGGTCCACCCAAGCTCTCCGTTGTATTAGTGTATCACCGG CTCACAATCCGCCACACATGTTGTGTACGCATGCATAGGTATCCGTTGTT GGGTCGCCGACTTTGAATCGATCGCTAAACTACACGTGATACCTTCAGGA CAAAACAAATACTTCGAATTGCGAAGTAGCAGTCAGTTGTACGTAAAATA AAACTTCATTATTGTTTGCAGCGTTGCCATGTTTTACCATGCATGGTTGG TTCATTGGTGTTTTTACAGCATGCAGTCGGTAACGTGACTAGTAAAGTCT CGAAGAGCACGCCACATGCTACACCTACCATTCAAAGCCCACTTCTCGTC ATGTGAAAGTTTGGTGGGTAAACTGCTGTACAAAAACTGCGCTGCTGCTG TGGTATGTTTTCCAGATGCCTCCTCGTATTTTACCCCCTCTTTGCGCGAA ATACTTGAATTCTACGCAGAACAGCCCCCATTACAACCCCCATTAAATCG GAGCCCATGAAATAACCACGAGACACAATGTCGCGGTGACCCACGTGTCG GCTCGCTCAGATCTGCTGCTGAGGCCGAGATGTCGGAGATCGAAATTATG GTCCAGGCAGTCCGGAAACTGTCCGCATCTCAGCCCGAACATGGCATCTC CCAGTGCTGTACTCGCTGTCATGGGTCGCAATCTTCTGAATCGCGGGTCA CACAAGGCAGCTAGTGGTATGATGTGAGCTAACATTGTTGACCCGCAGTT GAGGGCATCGGAAATCGAGGCCAATACCGACGTGTGCAGCAGTGGAAGAT GCCATGTTTCGGGCTGAGGAGCGGAAGGTTTCTGGACTGCTGTACCACAT TTGTTCGACTACTGTAAAATATTGATCCGTCTAAATTTTCGGGACCCGGG TACCCGTTTGGGCTCGAGAGGGTGGACCCAACCGGGTACCCGGGTAAGTG AGAAGTTGAATACGGTGCCCCCTTCCCCCCGGAATAATAGTGAAACACGA CGCCTCAAAAAGATTAGGAGGCGGTGTGTGTGATGTTCATGGGGGTACCC CATTACCAAAGGGGAGCCGTATTGCGATTTCAATTACCCGGGTAGCAAAT ATGCTGCCCGGACCCGACCGGGTAGTGCCGGGACCCGGGTACCCCCATCG GGTACCCGGGTAATTTTTAGACGGAACAATGCTCTAGACCACTGACATCA CACCCCCAGAAGAAGATCTGAGCGTGCCAACACACGTGGTGGTGTCTTCT GCTCATCTCAGGCTCGCTTCCAGGGATACATCCACCGGAGGGTCAATTTT AAGGAACCTCTCGTGCTCGCTGTAATTGTCCTGGATGTAGAGCGGAGGGA GTTTACTATCTTGCATTTAAGGGAGGGCGAAAATGAAGCGGAGTTTGAAA CACCATGCCATGCACGAGAATGCCCCTACCCCGGTCTCCCAACCAATTTT TCCGGCTCCAACCTTCTTCTGCTGGTTTTATAAGCCTACGGTATTGCGTG ATGTTCGGGCGCTGTTTTGGTGTGAGGTGCTGGAATAAAGAGATGCCTTT TCGCTTGTCCCAGTAAATAGTACTTCGAAGAATTAGAGCGGACCGTCAAA AAATAGACTGTTGCGCGGTTCGTTCGTTGCTCGCAGGGCCATGGCAGAGG CGAGCCGAGACATTGCGTTTCTTTCCGAGTTTGCGGACGGGCAAAACTTC CTGATGAACTTGACGGGATGCCGTGTGCTCCATTTCACTTGGAACGGCGA TGGAGACCAGGAAAAGGTAGATTCTTGAAACATGTTCCCCTCGTGGTGGA GACGGTGTAAAACTTTTCTTGCCGGGAGCTTCACCTGCGTATCGTGCACG ACTTAGAAAAACGTTTGCGGTGTAGTGTGAAGAATGGGGGGTGGGTGGTT TTATCAACAGAAAGGTACAATTACGGGATGGCATCATCCGTTATCCATGC AAATGCTAGACTACGGGTAGCAGCAACGAATCCACCACAGCACGATGAGA GCCTATCGATGTTCATCAGTTTCTTACGCCGGCGATCTTTTGTGGTGGTT TCAACCGACTCCCGAACAAATTGAGTTCCAGGTAGATATTATCTTCTGTC TGCGACCATGTATTGTGCTGGACCCTGGTACGAAGAGATATGTCTGCCTG CACGCTGGTTTCAATCAGCGGCTTACATTTACGTTTTTACCTGCTGAGCA CACCAACATGTCACATCTAAGGCCGTGCTGTAGGTGCGTAGTACAAATTC CGTGGGGTTGGTTGATGCTTTGTCCGTCGTATACTCATCTCTCTTGATAC GTGTGCCTGTTGCTGCCGGCAGGTTATGTTCGAAAACACGAAGGGATTGG CGGCACCCGTGACCGAAGATTGGTTACAGAACACGTGCTACAACAACAGG GTGAGCCTTGCGTTCGGCGTTTGGGGAAGCTTTGCAAATCTCACGAGTGC CGTCACCTCGTCGAGAGACACGCCATTAACTACATTCATCATAACCCACC TCATGGATGGAGTATCCTACGTCGGTAGAGCACACGTTCGCGACATTCGG GGCCCACAACTGCGCGACTTTTTTGTGGTCGGTTGACGGCAAGAGCTCAG CAGTGTACCGCCGTACGCTTTTGAAGGCCCTGTTCCTGGGTGCTCTTGCT CGAATGTTGATCCCACAGAGCAATCGTTGTTCTACTATGGCTGTAGAAAA GAGTGTATACGCTCTTTGTGTTTTCGGTACAGCAATTGAACGTCTCGCTC TCGCAGTCTAGCAGCTGTCGGTAAGACCGTGCTTGAATTGTCTCGAACAG TTGCGTTTCGTCCTGCTGCTGTCGCGGATCCGACAAAGCGCCAACGGTAG ACGTGACGATTCAAATTAATGGAAGGCGGCGGCAGTCAAGTCACAGGTCT CGTACTTTTGAACCTCGTTGTAGTATACTTCAACGAAGTATATTATGACG TACACCATTCTGAGCACATGTTGCAATCTACGGAATGGTATATACTTCGT ATGTTTCATTGTTGTCCGCCTTCAACACCATTCCAACAAACGATACGTTT GGCATATCGGTGTGATGACGATGATCTGCCAGGACCAACTTCCGGAGCTG GTCGTGCTCACTGCCGCATCGGCCAAGCTCGTGGCCAGGGTTTTCATCCG CGCAGGTCAGTCAAACCAAAAGATGAGCGTAACGGAAATAGTTTCGCTGT TTCAGCCCCTTTGTCCAAATTACTTTTTGGTGTAGTGTTTGCTGTTCAGC GGTGTGTGATCGAGACGATGTGAGCGAAAAGTTATATGCGAAGTGTCAGG TATCAATTTCGGGTTTTCGCCAGCTTTCGTTCTGGTTTTACGCGTGAAGC ATGTACCCAAGCCCTATAAAACTTGTTGTCTACTTCCGTGGGACCATTTC AGGAATCTCAAACGTCGTTGCCGTGGAGACAAGCGACGATGATGATGCCA CCTTGGGCTTCATACACTCCTTCTACCTCAGCCTTGCGCAAGGGTTTACT TTGAGAGATTCCTTCGGAGCGGGCGTGCACAGGTGAAAACATGCAGAGGT AAACGCGTGTTACTAAAACATTGTGGTTGTACGAGCTGGATTGGCCAAGA ATTGGGTTTTATTCGTTCGGGTATCTCTCTGCCATTTCGTAAAGTTTAGG CTTGTAATTCGCGGGTACTTTGTAATTTGGTGGCTGATCCTATGAGGCAA TAGGGGGAGCGTACGTACCGGAACGTTTTCAATCCGAGCTGATTTAAATT ATGGAGAAGGGGCGTAGTGGGGGATGATTCCGATGATGATTATTAAAATC GGCATTTTAAAAGTATCGCGTATAAAGCTGGAAGTTGGTGTGCGTACCTG GGAACATCGTGAGAGAATGGATGGCACAGCATTCACAAGGATCACTCTTC TATCAAGAGTTATGGTCTCGTCAAGAATCCGATACAACATACGAGTTACC TGGGAAAATGTGGGGATATCGCGATTTCCGAGCCGGGTCAAAATTGACAA GTGTTTTGGACCGCTCTTGCAGAAAGGGGAACATTACTGCACCTTTCGTT TTCTTTTTTTTCATCACTTCGTCGCAGAACAAATATTCCCGTATCCATTT CTTGGAAGGAATTTTCGGAACGACTCACTAAAATTGCAAAGTGCAGCTTG TTCTCTCTGCAATAGCGGTCGGAATGACGTTTCAAAATTTCAGGTGACGA TTCGTAAAACCGGCTCGAAAATCCCGTCCAGCCATTTGTACTCCGTCTTG GGTTGACCAGCCTGTATATTGTCCGGTACCTACGGCCGTTGTGACGTCGA GTGTTGTAGGTTGTTGAAATGTCACGACAGCTCCACGTCGAAGTCTAAGA TGAACTCACGGGAGCCGTGTGCACTGTCGTGACTCACTGCTGTTTCCTGC GCGAAAAACCATTCCGATTTATGTGTATTTCGCCTTTTGCAGAGCAGCCA GTGAAGATATCCTGAAAGAGGCCGCAGCTCAACTTGTGTGGTGTTCCTCT GAGGCATACAACTAATTCGTCCTTGCCCTGCCTACACGGCATGCAGCCTT CCAGATGGCCAAGAGGGACGATGCGTCCTTCTCCCAGACGACGGGGCGCA CTGGATTTCTCCTTTTGACGACGCAGAGAGCGGGAGTTTCACGTATCGCA TCCCACGCTCGCCGCGGAAGATGTCTAAGGCGCCAACCCTTTCCACCTTG CTCGGCAGAGAGGTACTGTATGGTGCATATAGGCTTGTCTAGGTGCGTTC GGTGCATCGTTTACAAACAGCAACAACGTCTGATTTAGCGTGTTTTTTGT CAGTCCATGTTGTTGTGATTGCGTGAGTGGCGAGGCGAGCTGCTCGCAGC TTCAACATTGTTGGAGGGGTCTACAAGGAGATGGAAACTTGATTGCTTTC CACGGGCTAACTAACGCGCCTCCTGGCCCATGGTCTGGGTGGTACAGGGT GCCAGAGCTTGAAAGTTGACCGTTGTTCGTTGATACAACAATGATATTTG AATTTTATTTTTCAGACGTGCTTGAGCAATTTCACGCGCGGCTGCATCGC GATGTTACTGGCTTTGCAGATCCAGGTGCAAGAGGTGTACGCACATATGG TGCAGCACAGCAAGGTCATCACCATCAGCGGCAGACCAGGCATTGGGAAA ACGGAGGTGGGCTGCACGAATTTTGGGGCGCCATCATCTCGTTCCAAGTG ACTGAAACTATCTGCGCCTGTGAAAAATGCGTCCGACCTCGTAAATGTAA AATACTGACAAGGATTGCACGAGCAGACCGTTGGCCACATGCTTTGCCTG CCAAGGACCTCAACGTGACTGCAGTCTTCGGGTCGAAAACCCCACATGCT CGACTAAAATGTGGTGCGATTTCGGAGACTCGGCTGGCCTTGACCTAGGT ACGCGTCTTCCCTCATACCGTCCTCAGGTAGCTCTACGGGCTTGCGAGTA TGCGAGAGAGCGGGGTTTGTTCGTGAAAACGTTTTTTGTTCCGCTTCAGG ACAAAAAGACGGGCGCGCCAATCACAACGCTGAAGGAAGTGGCCGCGCGC ATCGCCAGCGTTTTTGGCATCGTGGAGCAGGTTTGTGGGTGTGTCTGTAA CTTGCACATGATGTTTGTCGTTGTAAGAAAAGAGGGCGACGGATATTTAG CTTCAGACCTGACCATGGCAATTAAGTCCCCATATCGTGATTCTTCGACG CCTGCTTTATTGTTTGAAGTCTGTCACGGCAACGCTCGACAGTTTTTTTT TTTGCCGGACTGATTCAGATTTGTTTTTGTTGGTGTCTCAGCCTACAAGC GTGGTCCAGACTTGCTCGTCACTTCTCTTGCCGCCTTCTTGGCAGCGAGA CAACACCTATCCAACCTGTATTTTTTCCACCTCGAGTTTTTTCGGCATCC CCCTTTGTTGCTAACGCGGAATTTTTGTGTACTACAGCAACGCTGGCATG ACAAATGTGAGTCGATCGTCCAACCACCTCTTGAATTGTGCAGCATTTCT ACAGGTAGCTTGAAACCGAATTTCAATTGGCTCTTTCCCGTTGCCCGTTC ACCCCCCCTTGAAATAATAGGGTCGAGTTGTCAGGAAAAGTCAAAGTACA CAATTTTGATGCCATACGTCAGCCTTCCTCCTGTTCACGAGTCTGTAGAA ACTTTGTTGCTGATTCTCCACGGAAGTATTGATCTGCAGAACAGTTGTCC TTACGTGACCGCTATCCCTGATAGCAACGCCATTACAACTATTGCCCAAC TCACATTTAAAGCTAGTTTTTTCTGTCTCACAACGGCAACCTCATTTCTC AATCTTTACATTGCTTGTCCCTCGTGTTGAAAGTCTCGATTGATTCATTC CCAGTTTAATTGCCTCATTTGCAGGAGGTGCGAGATCACACTGAGGGTTT CTTGGGATGTATCCAACACAAGTGCGGCCTGATTAACGGCGACCTTCTGC TTGTCCTGGACGGGTGTTCACCGTACTTCGTCAGCAAGAGCGAGTGAGTG AATCACTGGTCGGTTCGCTTTCGACGGACGCACGTCTTGTTTTTCAGAAT GTTGCGACAGATTTGCTGTCGGGTTTCGTCGCTCTGTGTGTGAATGGCTC TCGCTCGTGCGACGGCTGCTCGTCCTTTCATTCAAAGTGTTGGTGCAAGG TATGAACACAAAGTCAAGCGAGGCGGCTCTCCTTGCGCCCGGCCTTGTTT GTTCCCTGCGAAGGGTGTTGCAGCCTTTCGGCGGTACGTTGTATGTTGCT GTATGGTTGTCACTCGGCTGACCCATGGTCTTTGCGCGGTGACCAATGAG TCCACCGTGCCTCTTGACTGTATGCAGCAGTGTTTCATGGTCAATGTGAT GTTTTTTCAACTGTCACCCTTGTTCCATTTATCTAGCGAGCCAATCAGGC TGTCGTCCGTTGTGGAGCAGCTGTGCCAGCGGGTATCGAATCTTCAGTAC ATCGTCACCATCGTCACACAGGTACGTGTCACATTGGTCTGCGGGAAGAT TTTTTCCATCGCTCATTTACGACGGCCTTTTTTCGAGGGCCATCAGAACA ACCAAATGGCGTTCTGTGAGCGAATTAGTACAAGATCTGTCAAGACCTGT TCCAGATGCAACGCTGCATGGAGGTAAACTCGGCGCGGTGGCTGGTGTCG TGTCGCTTTCGCAGGTGGGTATTGCGAAAGAAAAAGTGGTGAACATCGGC AGGCTGAGTGAACTCGCTGCTGCGGAGCTCTTCGTCGCCAGCGCTTCTCG GGATGTACGTTTCACTCTCTTCGAGTAATGGTAGCCCATTCCCTCCGAAA TCTCAATGTTTGGTACCGCAAGTTGATGCTGTACTCTTCAACCTGCGTAC ACGTGGGTGGGAGCGAGGAGCTCGGTGCTTGTGCACGACGTTGCGCGAAC CTTGGCTGTTGTTGGTCTCTGAGAAACCTTCCGGCACTTTCATTGCCTCC TGCTGCATGCGGTATCAACGTGGTTCACCAGTCCAACTCTACTCGTCCAT GATCCTGGGCCATTTGTCTCTTTGCGGACGTAGGTAGCCGTAGAGGAGCT TCGTGGGGGCATGGTCGTCAGCGGGCCACAGGAACGGAGCGCGGAGTGCA TGCGTCTGTTTGCGGGGGGCGTCATCATGGCCGCCCTAGGTGAGACCGAG TGTCAGGGAGGCGGAGGTTGCCGGTAGAGACTACTCGCGGCATGCGTAGC TAAGGCACCATGTGTGCGAAGGGTTGTTTGAGACCAGGAAGAGGGCCCAG CAGTAGCGATGTGAGAGAATACAGCGTGTGCTGCCTATTTTCACGTTCTC GTTACTCGCTGTTGGATTTGTCCTGTTTTGATCGTCGGGTTTGCTGACCG ACCTCGTGCTTGCTACAAGTATTTCCTCTACGATTTCTATCTGAAACCTA TTTCTGTACATTGTATCTGAAAAGGGCACTGCAATTTGCACTTTGGGTGG GACATTTTAATGATTGTCAACTAACGGCACCGTTTTCGCGTTTTCGTCTG CTGTACCAAATGCATGCAGGATGCCACCCTGGTGCAATCATCGCCGCGAG CAGCATGCTGAAGAAGTGGCATCTGCTGACGAATGAAGACGACTATCTGC AATTTATAGCGGTGCAGCTACGACGGTGCGGATGCGGTAGTGTACGGCCC ATGTTAGATCGAGAGGGATGGAGGCTGCACCAACACTCTGTACTTTCGTG AACTATTGGTTATACTGGGCTTGTTCACGGGGGTAAGAGTTCTGCGGCAA ATTTTTCGAACCTCTACCGTGGCACCGCAGAAACCGACACAATATACGCT CATCCCGTTCGCTCCCGCTGCGGCATTCTCCCGTTCTAATACCTCCTGGT AGCCTTGTAATTACCGTCTACCTTGTTTTCTTCTGTGGCAACGGAATGTT TTCCGTGTTGTAAACATGATCAAAAATATTACAAGGCGTCGAGCACGCGA AGCGTCGCGATTACTACAATATGGGACGGGAACAAACGCGCCAAATACAT TGGCACCTGCGCTAAATGATCCGACGTGAGCATGAGAGAAATATGCAGCA GTCATTTTACGCTTTGATATTTGACGAGGACATTTTCTTGTGTCACCTTT CATCGCCCGCGCGAGCCAGGTACGTCGAGCTGGAGCACGCCTTCGCTAGA CGACTGCACCAGTGTCCGCAGACGCACAGCGGTAAGCGAGCGTTGTTTTC GCAGGCTCTTTTGATGTCGCTCATCTTTGGATGTTGCAGACACTTCGTTA GTCCTGTCTCCGCAACGCCGTCAGACTGGCTAGCTGAACGTTGTTCTGCT GCAAGCATTTTGTGCTTTTTGCATAACACAGTAGATGATGTATTACAAAA CTTGTCGGGCACCTACAGTCCTCTTGGTAGCTTGGCTGCTCTTCTGTACC TGATCTGGCCAAGCACCCTTCCTTTACTTTACCTTTCGCTTCCCTCCCCT TCCCCTCTCTTGTTTTTTCCCTGTGCACACAATCAACGCAGACTCCGTGG TCGAGAGGGAGTTGGGCCGCCAGGCAAGGGAAAGACGATCTTCTCGCGCA TCTGAACCTCCCAATCCATCCCCACCAGGGGTGGGTCCTGGTCAATCAAA CGGAGAGTTATGGTGGAGGCGAGCTCTGGAGCTGCACACCGGCGAATTGG GTGTGTTTTCACAGACAATCCCATGGGAAGCCCTGTGCAAGCACAGCTTG GCGGCCTACTTCCTGCAGACGTTGGGAGATGAAGGTCGCGACCGACCGCT CCTGGTGAGCAAGCTCAGGGTTTTGGATGTAGTACAGTAGTGCAGCATGA GGGCCGGCAACCCGTGCTGCGCTGATCTCCCAGGCTGTGCTCGCAGTGTT GTGATGCTCATAACATTGTGGAGGAAATTGAGGTTTTCCCGATTCCGACA CTTCTGGCCGGCACGCTGTAGAATGTTCGATGATGAGGTCACGTGGAGGA TAAGTCGGAGCAGGCCCTGATATTTTCATCCCCCGCCTGCTCTCTCCGCA GAGCGAGGATTTCCAGGCTCTCGGGAAGAACAAAGACCTTTGGGATCCTT ACTGTCCGCCCGGAAACGCCCAGGGCGCTTCTGCCAGCCAGCAGGGATTT TTGGGGACATTTTGGCCGTGGTTTGAAGCCGCCACGCTCTTGCTCAAGGT GTGCCTCCACGCCACGTCCCGATTGTGCCTCGACCCACAATAGTGTTAGT CTGAGAGAGCGATGCTGCCAGGCTATGTTGTAGAGTTGCCCGGGTCCTAT AGACCGCGGTGGCAGCCCATATTTATTCCATGAAACTCGCATTTGTCTCT AGAACTGCTGGCTTGGCTGTAAGCGTTCGTTCACAAATGCTTCGAATATC ATCCCCGCTTAAGGGGTGGTGTTGGAAATGCCGGCCCGGAAGGCAGGCTT GCTCCATCTAGACCTTTCACGAAGTGCACGATCGTTCGGGTACAAACATG GTCGCCGTTGCTATGTCAAAAATGATCACGTAACCTTCGGGAGATCGTAC GAATGTATTGTTTGTATAAGCAATATCTACTGCAAAGACCAGTTCCTGGT GTGCCCGCCTCCCTTGACTGGGTGGCGCTTTGTGTCTTTTTTTTTCACAG CGCACCGGGTGCTGGGGGTTCCAAAAATTCCCGGTCATCTGCGGACTCAC TACCACTAGGTCCGATGGCATGAAGCTGCTGCAGGGGAGACCGCGAGGGA CGTTTTTGCTACGCCTGAGCAGCAAGCCGGGGGCGCTTGTTTTGATGCAT GTCAAGCCGATGCAGAGGGCA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig74:401919..418989+

>mRNA_P-littoralis_Contig74.92.1 ID=mRNA_P-littoralis_Contig74.92.1|Name=mRNA_P-littoralis_Contig74.92.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2115bp|location=Sequence derived from alignment at P-littoralis_Contig74:401919..418989+ (Pylaiella littoralis U1_48)
ATGACACGACGTCGAGAGCTCTTGCTCGCCCATCTCTTTGCGGCTCCCCT
GGTACGAGAAACTACAGTGGGTGGAGAGGAGAACGAGCCTGGCGGGATCG
TGCCCATCAAACAGCGAAACTATTCCCGGGAGCGACATGTGATCACAAAG
GCCATGGCAGAGGCGAGCCGAGACATTGCGTTTCTTTCCGAGTTTGCGGA
CGGGCAAAACTTCCTGATGAACTTGACGGGATGCCGTGTGCTCCATTTCA
CTTGGAACGGCGATGGAGACCAGGAAAAGGTTATGTTCGAAAACACGAAG
GGATTGGCGGCACCCGTGACCGAAGATTGGTTACAGAACACGTGCTACAA
CAACAGGGACCAACTTCCGGAGCTGGTCGTGCTCACTGCCGCATCGGCCA
AGCTCGTGGCCAGGGTTTTCATCCGCGCAGGAATCTCAAACGTCGTTGCC
GTGGAGACAAGCGACGATGATGATGCCACCTTGGGCTTCATACACTCCTT
CTACCTCAGCCTTGCGCAAGGGTTTACTTTGAGAGATTCCTTCGGAGCGG
GCGTGCACAGCCTTCCAGATGGCCAAGAGGGACGATGCGTCCTTCTCCCA
GACGACGGGGCGCACTGGATTTCTCCTTTTGACGACGCAGAGAGCGGGAG
TTTCACGTATCGCATCCCACGCTCGCCGCGGAAGATGTCTAAGGCGCCAA
CCCTTTCCACCTTGCTCGGCAGAGAGATCCAGGTGCAAGAGGTGTACGCA
CATATGGTGCAGCACAGCAAGGTCATCACCATCAGCGGCAGACCAGGCAT
TGGGAAAACGGAGGTAGCTCTACGGGCTTGCGAGTATGCGAGAGAGCGGG
GTTTGTTCGTGAAAACGTTTTTTGTTCCGCTTCAGGACAAAAAGACGGGC
GCGCCAATCACAACGCTGAAGGAAGTGGCCGCGCGCATCGCCAGCGTTTT
TGGCATCGTGGAGCAGGAGGTGCGAGATCACACTGAGGGTTTCTTGGGAT
GTATCCAACACAAGTGCGGCCTGATTAACGGCGACCTTCTGCTTGTCCTG
GACGGGTGTTCACCGTACTTCGTCAGCAAGAGCGACGAGCCAATCAGGCT
GTCGTCCGTTGTGGAGCAGCTGTGCCAGCGGGTATCGAATCTTCAGTACA
TCGTCACCATCGTCACACAGGTGGGTATTGCGAAAGAAAAAGTGGTGAAC
ATCGGCAGGCTGAGTGAACTCGCTGCTGCGGAGCTCTTCGTCGCCAGCGC
TTCTCGGGATGTACCCGTAGAGGAGCTTCGTGGGGGCATGGTCGTCAGCG
GGCCACAGGAACGGAGCGCGGAGTGCATGCGTCTGTTTGCGGGGGGCGTC
ATCATGGCCGCCCTAGGATGCCACCCTGGTGCAATCATCGCCGCGAGCAG
CATGCTGAAGAAGTGGCATCTGCTGACGAATGAAGACGACTATCTGCAAT
TTATAGCGGTGCAGCTACGACGGTACGTCGAGCTGGAGCACGCCTTCGCT
AGACGACTGCACCAGTGTCCGCAGACGCACAGCGACTCCGTGGTCGAGAG
GGAGTTGGGCCGCCAGGCAAGGGAAAGACGATCTTCTCGCGCATCTGAAC
CTCCCAATCCATCCCCACCAGGGGTGGGTCCTGGTCAATCAAACGGAGAG
TTATGGTGGAGGCGAGCTCTGGAGCTGCACACCGGCGAATTGGGTGTGTT
TTCACAGACAATCCCATGGGAAGCCCTGTGCAAGCACAGCTTGGCGGCCT
ACTTCCTGCAGACGTTGGGAGATGAAGGTCGCGACCGACCGCTCCTGAGC
GAGGATTTCCAGGCTCTCGGGAAGAACAAAGACCTTTGGGATCCTTACTG
TCCGCCCGGAAACGCCCAGGGCGCTTCTGCCAGCCAGCAGGGATTTTTGG
GGACATTTTGGCCGTGGTTTGAAGCCGCCACGCTCTTGCTCAAGCGCACC
GGGTGCTGGGGGTTCCAAAAATTCCCGGTCATCTGCGGACTCACTACCAC
TAGGTCCGATGGCATGAAGCTGCTGCAGGGGAGACCGCGAGGGACGTTTT
TGCTACGCCTGAGCAGCAAGCCGGGGGCGCTTGTTTTGATGCATGTCAAG
CCGATGCAGAGGGCA
back to top