mRNA_P-littoralis_Contig74.80.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig74.80.1
Unique NamemRNA_P-littoralis_Contig74.80.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig74.80.1 vs. uniprot
Match: D7FQY7_ECTSI (Ubiquitin-conjugating enzyme n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQY7_ECTSI)

HSP 1 Score: 432 bits (1111), Expect = 7.180e-150
Identity = 239/322 (74.22%), Postives = 260/322 (80.75%), Query Frame = 1 
Query:    1 AMLAFLVLIAPSSTLATAATGHGVATTTSFSTTNGAGGSTASSKQPSSAGACISACSTTKRVG--VDALQTLALGVRGGDDGSDEEPSVMTLFIRVLVPGFGRKKIGDGDLDLEGGGLMRRLKRLVSGVFRTLLGSPGSAKPEGGEAK--VDSRKSIGKGKGAATMSHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITITGAEGTIYAGEKFRLRVSFPEDYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRTPDDNAAHSEARPGQAQQWIYHDDLC 954
            A LAFL L+A SST A A+T  G A + +F     A G  +S+   S+A +C    +T    G   DAL+T AL VRGG   SDE+PS+ TLF+RVL+PGF R K GDG+LDLEGGGLMRRLKRLVSGVFR + GSP       GEAK     +KS GK KGA T SHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITI+GAEGTIYAGEKFRLRVSFPE+YPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKR P+DNA H+EARPGQAQQWIYHDDLC
Sbjct:    3 ATLAFLCLVAHSSTSAAASTCQGGAPSRAFL----AHGRRSSALTSSNARSCNPGPTTQGESGHGEDALETFALVVRGG---SDEDPSLTTLFMRVLMPGFRRDKGGDGELDLEGGGLMRRLKRLVSGVFRKVRGSPVPITEPKGEAKNVATKKKSKGKAKGATTTSHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNATHAEARPGQAQQWIYHDDLC 317
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BLAST of mRNA_P-littoralis_Contig74.80.1 vs. uniprot
Match: A0A835ZFF1_9STRA (Ubiquitin-conjugating enzyme/RWD-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFF1_9STRA)

HSP 1 Score: 259 bits (663), Expect = 2.960e-81
Identity = 141/257 (54.86%), Postives = 177/257 (68.87%), Query Frame = 1 
Query:  214 LGVRGGDDGSDEEPSVMTLFIRVLVPGFGRKKIGD-GD----LDLEGGGLMRRLKRLVSGVFRTLLGSPGSAKPEGGEAKVDSRKSIGKGKGAATMS-----HLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITITGAEGTIYAGEKFRLRVSFPEDYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRTPDDNAAHSEARPGQAQQ-WIYHDDL 951
            L +RGG  GS    S   LF+++ +PG+G    GD GD    L     GL +R+KR +S +F             GG+ +       GKGKG ++       HL   +RPG+ANYRIQKEL+EFM NPP+ C+VSVGK+++VWIITITGA+GTI+ GEKF+LRV FPE+YP KPP+VYFLQ PPPP+H+H+YTNGDICLSLL  +DW PNLT  +LALSILSMLSSAKEKR P DN  ++  RPGQ+Q  WIYHD+ 
Sbjct:  127 LMLRGGGKGS---LSKFQLFMQIFIPGYGEDAAGDDGDGKAALTSAQPGLAKRVKRFLSALF------------SGGKKQPTKGAKGGKGKGGSSKDDTVGKHLASKHRPGDANYRIQKELQEFMKNPPEGCQVSVGKSLKVWIITITGAKGTIFEGEKFKLRVGFPENYPLKPPSVYFLQDPPPPEHEHVYTNGDICLSLLG-KDWTPNLTASALALSILSMLSSAKEKRRPADNFQNANRRPGQSQDSWIYHDNF 367
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BLAST of mRNA_P-littoralis_Contig74.80.1 vs. uniprot
Match: A0A0G4GQN8_VITBC (UBC core domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GQN8_VITBC)

HSP 1 Score: 218 bits (555), Expect = 3.530e-67
Identity = 100/160 (62.50%), Postives = 128/160 (80.00%), Query Frame = 1 
Query:  478 ATMSHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITITGAEGTIYAGEKFRLRVSFPEDYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRTPDDNAAHSEARPG-QAQQWIYHDDLC 954
            A   HL +++RPG+ NYRIQKELK+F+  PPD C+++VG NIRVWIIT+TG EGT+Y GEK+RL++ FP +YP KPP +YFLQ  P P+H H+Y+NGDICL+LL + DWKP LTV S+ALSILSMLSSAKEK+ P DNA+H++ + G Q   W+YHDD C
Sbjct:   50 AAKDHLRRSFRPGHVNYRIQKELKDFLTTPPDHCEIAVGSNIRVWIITLTGVEGTLYEGEKYRLKIVFPPEYPLKPPIIYFLQ--PTPRHPHVYSNGDICLNLLGT-DWKPTLTVASVALSILSMLSSAKEKKLPLDNASHADLKAGGQQHNWMYHDDKC 206
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BLAST of mRNA_P-littoralis_Contig74.80.1 vs. uniprot
Match: A0A0G4GVI6_9ALVE (UBC core domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GVI6_9ALVE)

HSP 1 Score: 217 bits (552), Expect = 8.790e-67
Identity = 110/191 (57.59%), Postives = 136/191 (71.20%), Query Frame = 1 
Query:  385 RTLLGSPGSAKPEGGEAKVDSRKSIGKGKGAATMSHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITITGAEGTIYAGEKFRLRVSFPEDYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRTPDDNAAHSEARPG-QAQQWIYHDDLC 954
            R L   PG  K  GG+ K D           AT +HL+  + PGN NYRIQKELKEF+ +PP  C+VSVG N+R WIITI G EGT+Y  E ++L+V FP++YP  PP+VYFL+  P P+H H+YTNGDICL+LL + DWKP LTV ++AL+ILSMLSSAKEK+ P DNAAH+EA PG Q   W+YHDD C
Sbjct:   26 RRLAVLPGVGKKSGGKKKAD-----------ATSNHLKAKWTPGNPNYRIQKELKEFIKSPPPNCRVSVGSNLRAWIITIKGVEGTLYEKETYKLKVVFPDEYPLVPPSVYFLR--PAPRHPHVYTNGDICLNLLGT-DWKPTLTVSAIALAILSMLSSAKEKKIPLDNAAHAEAPPGGQQHNWMYHDDKC 202
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BLAST of mRNA_P-littoralis_Contig74.80.1 vs. uniprot
Match: W7U274_9STRA (Ubiquitin-conjugating enzyme n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U274_9STRA)

HSP 1 Score: 219 bits (559), Expect = 2.550e-66
Identity = 110/210 (52.38%), Postives = 150/210 (71.43%), Query Frame = 1 
Query:  334 EGGGLMRRLKRLVSGVFRTLLGSPGSAKPEGGEAKVDSRKSIGKGK--GAATMSHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITITGAEGTIYAGEKFRLRVSFPEDYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRTPDDNAAHSEARPGQAQ-QWIYHDDLC 954
             GG +  R+KR + G+     GS      +    +  S   +G G+  G     HL K +R GNAN+R+QKEL+E++ANP +  +V+VG NIRVW++T+TGA+GTI+AGEK++L+ +FP DYP+KPP+VYFLQ  PPP+H+H+YTNGDICL+LL  RDW+PN+T   LALSILSMLSSA+EK+ P DN  H++  PG+ Q  W+YHDD C
Sbjct:  109 RGGSIHGRIKRFL-GLLWNAAGSSAGHDVKRSTIRSGSLGGVGGGRLGGNRMQKHLGKEFRRGNANFRVQKELREWLANPTENLQVAVGDNIRVWVVTLTGAKGTIFAGEKYKLKFTFPMDYPSKPPSVYFLQ--PPPRHEHVYTNGDICLNLLG-RDWRPNMTASMLALSILSMLSSAREKKIPQDNHVHADNPPGKEQANWLYHDDRC 314
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BLAST of mRNA_P-littoralis_Contig74.80.1 vs. uniprot
Match: A0A7S1TYR4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TYR4_9STRA)

HSP 1 Score: 212 bits (540), Expect = 2.040e-64
Identity = 103/153 (67.32%), Postives = 125/153 (81.70%), Query Frame = 1 
Query:  493 LEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITITGAEGTIYAGEKFRLRVSFPEDYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRTPDDNAAHSEARPGQAQQ-WIYHDD 948
            L K  + GN  YRIQKEL+EF+ NPP  CKVSVG NIRVW +T+TGAE T+Y GE+++LRV+FP  YPTKPP+VYFL+  PPPKH H+YTNGDICLSLL  +DW+PNLT  SLALSILSMLSSA+EKR P+DNA H+++ PG+ Q  W+YHDD
Sbjct:   91 LGKRVKRGNPLYRIQKELREFVDNPPPNCKVSVGDNIRVWTVTLTGAEDTLYEGEEYKLRVTFPTGYPTKPPSVYFLK--PPPKHPHVYTNGDICLSLLG-KDWRPNLTASSLALSILSMLSSAREKRLPNDNAQHADSPPGKPQDGWMYHDD 240
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BLAST of mRNA_P-littoralis_Contig74.80.1 vs. uniprot
Match: A0A7S4RNY0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RNY0_9STRA)

HSP 1 Score: 206 bits (523), Expect = 1.670e-60
Identity = 100/158 (63.29%), Postives = 121/158 (76.58%), Query Frame = 1 
Query:  484 MSHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITITGAEGTIYAGEKFRLRVSFPEDYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRTPDDNAAHSEARPGQAQQ-WIYHDDLC 954
              HL    +  + NYRIQKEL+ F+ +PP    V+VGKNIRVWI+TITGA  TIY GEK+RLR+SFP +YPT PP+VYFL  PP PKH+H+YTNGDICLSLL  +DW+P +T  SLA+SILS+LSSA+EK  P DNAAHS+ +PG  Q  WIYHDD C
Sbjct:  194 QKHLSAKLKSNSPNYRIQKELRAFLTSPPPNLSVAVGKNIRVWIVTITGASNTIYEGEKYRLRMSFPSNYPTSPPSVYFL--PPTPKHEHVYTNGDICLSLLG-KDWRPTMTGQSLAVSILSLLSSAREKSLPMDNAAHSQNKPGGNQDNWIYHDDNC 348
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BLAST of mRNA_P-littoralis_Contig74.80.1 vs. uniprot
Match: A0A7S2R2N4_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R2N4_9STRA)

HSP 1 Score: 200 bits (508), Expect = 4.720e-60
Identity = 99/164 (60.37%), Postives = 123/164 (75.00%), Query Frame = 1 
Query:  466 GKGAATMSHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITITGAEGTIYAGEKFRLRVSFPEDYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRTPDDNAAHSEARPGQAQQ-WIYHDDLC 954
            GK AA + H+ K  +  N NYRIQ+ELKEF+ +PP   KV+VGKNIRVWIIT+ GA+ TIY G+KFRLRV FP DYPT PP+VYFLQ  P P+H+H+YTNGDICLSLL  +DW+P +T  S+A+SILS+LS A+ K  P DNA +   +PG  Q  W+YHDD C
Sbjct:   50 GKSAAAV-HIAKELKSNNPNYRIQRELKEFLKSPPPNLKVNVGKNIRVWIITLIGAKNTIYDGDKFRLRVQFPADYPTSPPSVYFLQ--PTPRHEHVYTNGDICLSLLG-KDWRPTMTAQSIAMSILSILSGAQRKSLPMDNARNCLNKPGAKQDDWVYHDDNC 209
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BLAST of mRNA_P-littoralis_Contig74.80.1 vs. uniprot
Match: A0A7S2L3M3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2L3M3_9STRA)

HSP 1 Score: 201 bits (511), Expect = 1.120e-58
Identity = 98/163 (60.12%), Postives = 121/163 (74.23%), Query Frame = 1 
Query:  469 KGAATMSHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITITGAEGTIYAGEKFRLRVSFPEDYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRTPDDNAAHSEARPGQAQQ-WIYHDDLC 954
            K  A   HL+ +    N NYRIQ+ELK F+ +PP+   V VGKNIRVWIIT+TGA G+IY GEK+RL V FP++YP  PP+VYFL   P P+H+H+YTNGDICLSLL  +DW+P +T  S+ALSILS+LSSA  K  P DNAAH+ A+PG AQ  W+YHDD C
Sbjct:  192 KSEAVDFHLKSSLSQNNPNYRIQQELKAFIKSPPENLSVKVGKNIRVWIITLTGATGSIYEGEKYRLHVKFPKNYPAAPPSVYFLN--PTPRHEHVYTNGDICLSLLG-KDWRPTMTAQSIALSILSILSSASHKALPQDNAAHAGAQPGLAQDDWVYHDDNC 351
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BLAST of mRNA_P-littoralis_Contig74.80.1 vs. uniprot
Match: A0A7S4A863_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A863_9STRA)

HSP 1 Score: 199 bits (506), Expect = 2.510e-58
Identity = 117/255 (45.88%), Postives = 151/255 (59.22%), Query Frame = 1 
Query:  196 ALQTLALGVRGGDDGSDEEPSVMTLFIRVLVPGFGRKKIGDGDLDLEGGGLMRRLKRLVSGVFRTLLGSPGSAKPEGGEAKVDS-RKSIGKGKGAATMSHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITITGAEGTIYAGEKFRLRVSFPEDYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRTPDDNAAHSEARPGQAQQ-WIYHDDLC 954
            A+ T AL V GG + +   P         L+ G G            GG L  RL  ++    R  L   G  K  G E    + +K +   K   + +      R      RI +EL +F+ NPPD CKVSVGKN+ VWI+T+TGAEGTI+AGEK++LRVSFP DYPT PP+ YFL+  P P+H H+YTNGDICL+LL +  W+P +TV  L+LSILSMLSSAK K  P DNA H+ + PG+ Q+ W+YHDD C
Sbjct:   86 AMHTRALRVSGGANATSLAPEAKA----GLLDGGG------------GGSLATRLFGVIRKTVRMTLRLLGFGKDGGDEDTAPATKKKVAAKKKRRSPARASPAQRQAQ---RISRELTDFVENPPDGCKVSVGKNLNVWIVTMTGAEGTIFAGEKYKLRVSFPADYPTSPPSCYFLE--PTPRHPHVYTNGDICLNLLGN-GWRPTITVAQLSLSILSMLSSAKTKGIPQDNAVHAASAPGKPQEGWMYHDDSC 318
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig74.80.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQY7_ECTSI7.180e-15074.22Ubiquitin-conjugating enzyme n=1 Tax=Ectocarpus si... [more]
A0A835ZFF1_9STRA2.960e-8154.86Ubiquitin-conjugating enzyme/RWD-like protein n=1 ... [more]
A0A0G4GQN8_VITBC3.530e-6762.50UBC core domain-containing protein n=1 Tax=Vitrell... [more]
A0A0G4GVI6_9ALVE8.790e-6757.59UBC core domain-containing protein n=1 Tax=Chromer... [more]
W7U274_9STRA2.550e-6652.38Ubiquitin-conjugating enzyme n=2 Tax=Monodopsidace... [more]
A0A7S1TYR4_9STRA2.040e-6467.32Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S4RNY0_9STRA1.670e-6063.29Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2R2N4_9STRA4.720e-6060.37Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S2L3M3_9STRA1.120e-5860.12Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S4A863_9STRA2.510e-5845.88Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig74contigP-littoralis_Contig74:368371..372776 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FQY7
Preferred nameUBC17
PFAMsUQ_con
Model size957
Max annot lvl2759|Eukaryota
KEGG rclassRC00064,RC00141
KEGG koko:K01446,ko:K10688,ko:K13963,ko:K19589,ko:K20182
KEGG ReactionR04112
KEGG Pathwayko04120,ko04138,ko05146,map04120,map04138,map05146
Hectar predicted targeting categorychloroplast
GOsGO:0000209,GO:0001101,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009719,GO:0009725,GO:0009739,GO:0009987,GO:0010033,GO:0010498,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0030163,GO:0031625,GO:0032446,GO:0033993,GO:0036211,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044424,GO:0044464,GO:0050896,GO:0051603,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901700
Exons8
Evalue2.28e-150
EggNOG OGsCOG5078@1|root,KOG0427@2759|Eukaryota
Ec32 ortholog descriptionUbiquitin-conjugating enzyme
Ec32 orthologEc-09_003260.1
EC2.1.1.297,2.3.2.25
Descriptionprotein polyubiquitination
Cds size954
COG categoryO
BRITEko00000,ko00001,ko01000,ko03012,ko04121,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig74.80.1prot_P-littoralis_Contig74.80.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig74 368374..372776 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791531.5710504-UTR-P-littoralis_Contig74:368370..3683731680791531.5710504-UTR-P-littoralis_Contig74:368370..368373Pylaiella littoralis U1_48UTRP-littoralis_Contig74 368371..368373 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791531.585037-CDS-P-littoralis_Contig74:368373..3685591680791531.585037-CDS-P-littoralis_Contig74:368373..368559Pylaiella littoralis U1_48CDSP-littoralis_Contig74 368374..368559 +
1680791531.6022248-CDS-P-littoralis_Contig74:369147..3693821680791531.6022248-CDS-P-littoralis_Contig74:369147..369382Pylaiella littoralis U1_48CDSP-littoralis_Contig74 369148..369382 +
1680791531.612417-CDS-P-littoralis_Contig74:370203..3703191680791531.612417-CDS-P-littoralis_Contig74:370203..370319Pylaiella littoralis U1_48CDSP-littoralis_Contig74 370204..370319 +
1680791531.622869-CDS-P-littoralis_Contig74:370703..3707681680791531.622869-CDS-P-littoralis_Contig74:370703..370768Pylaiella littoralis U1_48CDSP-littoralis_Contig74 370704..370768 +
1680791531.638095-CDS-P-littoralis_Contig74:371152..3712971680791531.638095-CDS-P-littoralis_Contig74:371152..371297Pylaiella littoralis U1_48CDSP-littoralis_Contig74 371153..371297 +
1680791531.6688468-CDS-P-littoralis_Contig74:371896..3719701680791531.6688468-CDS-P-littoralis_Contig74:371896..371970Pylaiella littoralis U1_48CDSP-littoralis_Contig74 371897..371970 +
1680791531.6819303-CDS-P-littoralis_Contig74:372306..3723801680791531.6819303-CDS-P-littoralis_Contig74:372306..372380Pylaiella littoralis U1_48CDSP-littoralis_Contig74 372307..372380 +
1680791531.6953032-CDS-P-littoralis_Contig74:372717..3727761680791531.6953032-CDS-P-littoralis_Contig74:372717..372776Pylaiella littoralis U1_48CDSP-littoralis_Contig74 372718..372776 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig74.80.1

>prot_P-littoralis_Contig74.80.1 ID=prot_P-littoralis_Contig74.80.1|Name=mRNA_P-littoralis_Contig74.80.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=318bp
MLAFLVLIAPSSTLATAATGHGVATTTSFSTTNGAGGSTASSKQPSSAGA
CISACSTTKRVGVDALQTLALGVRGGDDGSDEEPSVMTLFIRVLVPGFGR
KKIGDGDLDLEGGGLMRRLKRLVSGVFRTLLGSPGSAKPEGGEAKVDSRK
SIGKGKGAATMSHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNI
RVWIITITGAEGTIYAGEKFRLRVSFPEDYPTKPPAVYFLQSPPPPKHQH
IYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRTPDDNAAHS
EARPGQAQQWIYHDDLC*
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mRNA from alignment at P-littoralis_Contig74:368371..372776+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig74.80.1 ID=mRNA_P-littoralis_Contig74.80.1|Name=mRNA_P-littoralis_Contig74.80.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4406bp|location=Sequence derived from alignment at P-littoralis_Contig74:368371..372776+ (Pylaiella littoralis U1_48)
GCGATGCTGGCGTTCCTGGTCCTGATTGCACCGTCATCAACCTTGGCCAC
CGCCGCTACCGGGCATGGAGTTGCGACCACGACATCATTTTCCACCACCA
ACGGCGCAGGAGGCTCGACTGCCAGCAGCAAACAGCCTTCTTCGGCTGGG
GCGTGCATTTCTGCCTGTTCAACAACAAAACGGGTGGGTGTTCGAAGCGA
TACGGCAGTACTATGATTTGATTTTTGTATGTCGGGCCGGCCCGAAACCC
GCTCTAACACTGCTTCCTTTTTCATCCTCGGCCTTTCGCTGACTCTCATC
TATCGCACCCACGTCCCCTGTACTTGGCAAGCTGTGTAGGGGTCCACGCA
AGCGCTAAAGTTTCTTGTGTATGATCGAATACTGTAAACGACAGCTCACA
ACAACCCTTCTGTGAACCAGAGAGGGAGATCACTTGTCGCCATGCCTCGT
CTTCAATAATTTGAAGCATGAAACGGCCAAGTTAGCACGGAAAATTTAGC
ACAGGGCTGCTGCTGAGCGTGTTTTGCGGTGGCTGCTGGCTCGCCCGTTA
CGATCAAATCGATAAGAACAGATCTTGTCTAAATTAATTAAAATTTTGGA
GGAGCGGTGTTCAGAGCAAAGGCGATAGATGTGTCCTCTGTCTAAGGTCA
AACGACTTCAAGGGCAAGCGATAAATCATAAGCGTTCCCTCCTATCCCCT
TTCCTCCCTCTCTTGTTCTCCCTCAGTACAAGACTAGCAGTTACGAGCGT
TCACCAAGCAGAGATACCATTAGCAAGGTGGATGCTTTACAAACGCTGGC
GTTGGGTGTGCGAGGGGGCGACGACGGCAGCGACGAGGAGCCATCAGTAA
TGACACTATTCATTCGAGTTCTCGTGCCAGGGTTCGGACGAAAGAAAATA
GGGGATGGGGATTTAGACTTGGAAGGAGGCGGACTGATGCGAAGGTTGAA
GCGCTTGGTGTCCGGGGTGTTCCGCACGCTACTGGGGTCACCAGGGAGCG
CCAAGCCCGAGGGTGAGGAGTCTCAAGGCTGCGTCTTTTCTTTCGTTGAC
CGCAGTTCATGGCTACAATGCACATGGGCCCGCACCACGTGGTGTGCAGA
TGTTCCCTGTTAACAATATTAGGGTGTCCTCCTCCACCCCAGAGGCAAGG
ATCCGTGCATCGTGCATGTTTGTGTCTCTCTTGCTTGGTCTCTGCGCATA
GTATGATATGGCATCACATGCCAAGTGATGTTTGTGGTGTGGCTGGTGTG
GGTAGACGTCGCGGTGTAGCGCAGCTACTCTTCGAAGAGTAGTCGATGTT
GGATTCGTCGTACCCTCGTCTGTTCGTCTTCGTCGCCGCCGCCGAAACGA
CTGTACTCTCTTCTCTTTACTCTCAGTGTTGTCGACCCGAGCCCTCAACG
CGTGCTTGATTGACCTCACACTACGACTGACACAAAAGGTCTATGGTGCC
ATGAAAGGGCCATGACAAGACATGGAATGAACAAAACAAGCGTCATCATT
AGGTATCACACTAGTATCGCTGCACACAGCCATACCCCATCCAGAGAAAA
ACAAATATTTTTGCTCCCCGAAATCCCCCTTTGCCGTAGACCCACTCAAA
TTTTGCTTCCATCTGGAACACAGCCGCCGTTTTTGTGCAAGGGTGCCCCC
CACCTTTACCGAAACCCCTCATGTTCCTCTCCGACGTGACTGCCGACTCT
GAACTAGTTCGTGACCGTGATCGAACTTGGAGAAAGAAGGCCTTTGATTC
GGCCTTTCCTGGTGCTGTTTGTTCATGCGGCAACATTTTTCGTCGAAATG
TTGTCTTGGCCGCCGTTTGTGGTTCTTACGAAGGGGGAGAAGCAAAGGTG
GACTCGAGAAAAAGCATTGGGAAAGGAAAGGGAGCAGCGACCATGTCCCA
CTTGGAGAAGACTTACCGACCAGGAAACGCCAACTATCGGATACAGAAGG
TATACGAAGTACCATTATATTACTTGATAGCGTTCTTTCATTTTACCCCA
TCGGGAAGTTGTCCAGGTCGTTTTCGGCAACGTGGATCTCACAGTGAACG
GGTGGTACACTCACCATCGTGGGATACGATACCCTGTAGTACAGCAAGCT
TTGATACACACGTGTAAGGCAAAGGGGAGCGCGCAGTTCGTGTTTCTTTC
GCGGACGAAAGTCAGTTTTTGGGTGTCGATAGTAGTCCTCCCAACACATG
TTGGGCCCGCCTTATGCGTTGACTTTTAAATTTCACGGTTGCTGGGCCGA
CCGGAGTACATATGGACATTTATTGCGGCACTGCCATTTGGCGTGCGATG
TTTTTTTTGCCACCCACTCACCGCGCTAAACAGGAATTGAAAGAGTTCAT
GGCCAACCCACCGGATTGCTGCAAGGTCAGCGTCGGCAAGAACATCAGGT
AAGAAGACAGAAAAAGAACATGCGAGCGGGAGTATGCGATCATGCGGTCA
TCGTTTGTTTTATGTTTTGCATTCGCAGGTACACTTATTTTTTGGTGCCG
CAGTTGTGCCGTAGTTGTGCCGTAACGCTATGGCCTTGTACGCGCATGTC
GCTTGCACAAGAGCAGGCAATGTGGGTCATGTTGACTGATCACACTTCTG
TCGGCGAATCGTATGAGTGACATCGTATACACGCTTTTGACTTGTCAACA
AGTCCATCGAGTGATACGTTGGACACGCTATGAATCTGCCATCATGCCAG
CAGATGCTGCTGTGCATCTCGCCGTTTTTGGTACGTCTTGATCATCATCG
TTGACAACCACCTCTGTCCGTGTTCCATCCAGAGTGTGGATTATCACCAT
CACTGGGGCAGAAGGTACCATCTACGCCGGGGAGAAATTCCGTTTGAGGG
TGTCCTTCCCCGAGGACTACCCTACCAAGCCGCCAGCAGTTTACTTTTTG
CAGTCTCCACCACCGCCGAAGCACCAGGTGGGTAGCTCCGCTCCTTATCT
GTATTGAGATCGCACTCACTAGTTTGGTGAGTGGTCAACCGGTGCTTTTG
ACGGTTTTATCTTTGTCCAATGTGCTGTCGTGGGCACAAATTTTGTTTTG
TTCGAGACGGATCTCGTCCAGCGTATTGTTGTCTCTTCCATGCGAGTACT
TGCCTTCATTTTAGTAGAGAGCACATGTTGTGTTGGTCGATCTCCGAAAC
ACTTCGAAAGCGAGATGGGTGCCGGCGAGCCTCGCCAGCCATGCTCAATC
AGTCTACCCCTAGCTTGTTAGTCCATCAACGAAACACTTTAAAAGCAAGA
TGGGTGTCACAGAGGCTCGCCAGTTATGCTCAGTCAGTCTAGCCATATAG
CCTCGGAGACTTGAACGTCACTGGGGACAAAAAATGGCAAAGCCTTGTTT
ACCTGTATCTACGGTTTCATGGAACGCTCAGACTAAAGAATTTTACACGA
CAAATCACGGCCTTGCTGTACGTATACCTCTCTTTCGGAACTTTCATGTT
GTAACGATCTCTTGTCTTCTCGTGTCGAATACATCCGCCCGTCCCCCCGG
CCGTTTCGGACTGTTTCGCTTTTCAGCACATATACACCAACGGAGACATC
TGCTTGAGCTTGTTGAGTTCCAGGGACTGGAAACCAAATCTCACCGTCAT
GTGAGTCGGACAACAGATCGGCACGTCACGGTCAACAAGCGGTATTCGTC
TCTTCTCCTTGAACGGCTTAGATCGACCGCGTTCGGCCATCAATGATGGG
TACCTTATCGTGGACATTCATACAACCACAAACGATAAAGTTGCGACCGT
TCACGAACTCTCGATCGCCTCACGCACGCCTCGGCACAGGCAACTGGACG
TACAAAAGAGAGATCTTTCCCCCATGCATTTTTTCTTACAAATGCGCGCT
CAGTTCGGACTACATTTCAACTGGCGCTGTAATTCTGTCGTCGTTTTTCG
TTTCGTTACATCATTCTCTTCGGTTTGCTTCAAAAGGTCCTTGGCTTTGA
GCATTCTTAGCATGCTTTCCAGTGCCAAGGAGAAGCGGACCCCAGACGAT
AACGCAGCACGTGAGTTTCGTACGTTAGAAATATATGTTGCTACCGAGAA
CGCGGTACGATAATGTACCCATGCTCGGGCCCAGCGGCACAGTCCTGAAA
CTTGTACAAAAGTGGAACGGTTTTCCTTGCTCACACAAAGGGGAGGAAGG
AACAACACTTTCTCACCGCAGTTCTCAACTTGAACCTTTTCAGTCTGTGG
TCGTTGGTCTTGTCGCGGATGGCAACCTCATGCTATGTTGCTTGGAACGG
ATGCATCGGTCACCTAAGCCTCAAACATAAGTGACCAAAAATCATCCCTC
ACGTCGGGTTTCACGTTTCCCACTTGTGTTTTTGTTGTTTTCTACAGATT
CTGAAGCGAGACCAGGGCAGGCTCAGCAATGGATTTATCACGACGACCTG
TGCTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig74:368371..372776+

>mRNA_P-littoralis_Contig74.80.1 ID=mRNA_P-littoralis_Contig74.80.1|Name=mRNA_P-littoralis_Contig74.80.1|organism=Pylaiella littoralis U1_48|type=CDS|length=954bp|location=Sequence derived from alignment at P-littoralis_Contig74:368371..372776+ (Pylaiella littoralis U1_48)
ATGCTGGCGTTCCTGGTCCTGATTGCACCGTCATCAACCTTGGCCACCGC
CGCTACCGGGCATGGAGTTGCGACCACGACATCATTTTCCACCACCAACG
GCGCAGGAGGCTCGACTGCCAGCAGCAAACAGCCTTCTTCGGCTGGGGCG
TGCATTTCTGCCTGTTCAACAACAAAACGGGTGGGTGTGGATGCTTTACA
AACGCTGGCGTTGGGTGTGCGAGGGGGCGACGACGGCAGCGACGAGGAGC
CATCAGTAATGACACTATTCATTCGAGTTCTCGTGCCAGGGTTCGGACGA
AAGAAAATAGGGGATGGGGATTTAGACTTGGAAGGAGGCGGACTGATGCG
AAGGTTGAAGCGCTTGGTGTCCGGGGTGTTCCGCACGCTACTGGGGTCAC
CAGGGAGCGCCAAGCCCGAGGGGGGAGAAGCAAAGGTGGACTCGAGAAAA
AGCATTGGGAAAGGAAAGGGAGCAGCGACCATGTCCCACTTGGAGAAGAC
TTACCGACCAGGAAACGCCAACTATCGGATACAGAAGGAATTGAAAGAGT
TCATGGCCAACCCACCGGATTGCTGCAAGGTCAGCGTCGGCAAGAACATC
AGAGTGTGGATTATCACCATCACTGGGGCAGAAGGTACCATCTACGCCGG
GGAGAAATTCCGTTTGAGGGTGTCCTTCCCCGAGGACTACCCTACCAAGC
CGCCAGCAGTTTACTTTTTGCAGTCTCCACCACCGCCGAAGCACCAGCAC
ATATACACCAACGGAGACATCTGCTTGAGCTTGTTGAGTTCCAGGGACTG
GAAACCAAATCTCACCGTCATGTCCTTGGCTTTGAGCATTCTTAGCATGC
TTTCCAGTGCCAAGGAGAAGCGGACCCCAGACGATAACGCAGCACATTCT
GAAGCGAGACCAGGGCAGGCTCAGCAATGGATTTATCACGACGACCTGTG
CTAG
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