mRNA_P-littoralis_Contig1186.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1186.1.1
Unique NamemRNA_P-littoralis_Contig1186.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1186.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1186contigP-littoralis_Contig1186:745..1261 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size517
Hectar predicted targeting categorysignal anchor
Exons1
Cds size309
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789497.9595582-UTR-P-littoralis_Contig1186:744..7921680789497.9595582-UTR-P-littoralis_Contig1186:744..792Pylaiella littoralis U1_48UTRP-littoralis_Contig1186 745..792 -
1680789497.9830105-UTR-P-littoralis_Contig1186:1101..12611680789497.9830105-UTR-P-littoralis_Contig1186:1101..1261Pylaiella littoralis U1_48UTRP-littoralis_Contig1186 1102..1261 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789497.97389-CDS-P-littoralis_Contig1186:792..11011680789497.97389-CDS-P-littoralis_Contig1186:792..1101Pylaiella littoralis U1_48CDSP-littoralis_Contig1186 793..1101 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1186.1.1prot_P-littoralis_Contig1186.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1186 793..1101 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1186.1.1

>prot_P-littoralis_Contig1186.1.1 ID=prot_P-littoralis_Contig1186.1.1|Name=mRNA_P-littoralis_Contig1186.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=103bp
MSQRVVECPWSWSGVVDAARGGDFTVGSSDVSSGAKSWGRYLWMASSYYG
CRQHCIGCWLAGIKAMTGWAFFILRRPLRLFLLMYIIILFLSSLCSAFRL
FS*
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mRNA from alignment at P-littoralis_Contig1186:745..1261-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1186.1.1 ID=mRNA_P-littoralis_Contig1186.1.1|Name=mRNA_P-littoralis_Contig1186.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=517bp|location=Sequence derived from alignment at P-littoralis_Contig1186:745..1261- (Pylaiella littoralis U1_48)
GGATTTTGGGAACTGCGGGAAACGCAACACCGGGTACCCGGGTATTTGAT
ACACAAGCCCCCAGAGAACACAGCACAGCGCACAGCAAACAGCGCACAGC
GTACAGCCATCCAACCCACAGCATCTAGCACACACAGCAGAGCTCAGACA
GCAGAACACCATGAGCCAGCGCGTGGTCGAATGCCCATGGTCTTGGTCTG
GAGTAGTGGACGCTGCGCGTGGCGGTGACTTTACTGTTGGCTCCTCTGAC
GTGTCGAGTGGTGCAAAAAGTTGGGGGAGGTACTTGTGGATGGCGAGTAG
TTACTATGGTTGTCGCCAGCACTGTATAGGTTGTTGGCTAGCGGGGATTA
AAGCGATGACAGGATGGGCGTTTTTCATTTTGCGTCGCCCGCTGCGCTTG
TTTTTGTTGATGTATATCATCATTTTGTTTTTGTCAAGTTTGTGTTCGGC
TTTCCGCTTGTTTTCATGATGTGTTCGTAAAAGAAAATGAAAAAAACAAT
AATGCAACAATGCAAAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1186:745..1261-

>mRNA_P-littoralis_Contig1186.1.1 ID=mRNA_P-littoralis_Contig1186.1.1|Name=mRNA_P-littoralis_Contig1186.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig1186:745..1261- (Pylaiella littoralis U1_48)
ATGAGCCAGCGCGTGGTCGAATGCCCATGGTCTTGGTCTGGAGTAGTGGA
CGCTGCGCGTGGCGGTGACTTTACTGTTGGCTCCTCTGACGTGTCGAGTG
GTGCAAAAAGTTGGGGGAGGTACTTGTGGATGGCGAGTAGTTACTATGGT
TGTCGCCAGCACTGTATAGGTTGTTGGCTAGCGGGGATTAAAGCGATGAC
AGGATGGGCGTTTTTCATTTTGCGTCGCCCGCTGCGCTTGTTTTTGTTGA
TGTATATCATCATTTTGTTTTTGTCAAGTTTGTGTTCGGCTTTCCGCTTG
TTTTCATGA
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