mRNA_P-littoralis_Contig74.47.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig74.47.1
Unique NamemRNA_P-littoralis_Contig74.47.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig74.47.1 vs. uniprot
Match: D7FQZ2_ECTSI (Signal peptidase complex subunit 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQZ2_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 1.950e-52
Identity = 79/86 (91.86%), Postives = 82/86 (95.35%), Query Frame = 1 
Query:    1 DFKGQLLAENLYFYIVILLGAVGWVVGFVMGDFTYTLMGWAAGMVLSVILVVPDWPMFNRNPTKWLDQLPPREGVMPVGAAAEDDE 258
            DFKGQLLAENLYFYIVILLGAVGWVVGFVMGDF YTL GW AGM LS+ILVVPDWPMFNRNPTKWLD+LPPREGVMPVGAAAED+E
Sbjct:    2 DFKGQLLAENLYFYIVILLGAVGWVVGFVMGDFMYTLAGWGAGMALSMILVVPDWPMFNRNPTKWLDRLPPREGVMPVGAAAEDEE 87
[Close]
BLAST of mRNA_P-littoralis_Contig74.47.1 vs. uniprot
Match: A0A7S3HG34_9STRA (Signal peptidase complex subunit 1 n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HG34_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 3.340e-25
Identity = 42/82 (51.22%), Postives = 58/82 (70.73%), Query Frame = 1 
Query:    1 DFKGQLLAENLYFYIVILLGAVGWVVGFVMGDFTYTLMGWAAGMVLSVILVVPDWPMFNRNPTKWLDQLPPREGVMPVGAAA 246
            D+KGQ L+E +Y  + IL G V W+VG+V GDF  T  GWAAG+ L+++L +PDWPM+NRNP  WL+++  R  V  VGA +
Sbjct:    8 DYKGQRLSEYIYSILTILFGGVAWIVGYVKGDFQVTFYGWAAGLALALLLCIPDWPMYNRNPVTWLEEVGKRNKVKSVGAGS 89
[Close]
BLAST of mRNA_P-littoralis_Contig74.47.1 vs. uniprot
Match: A0A7S1TSQ8_9STRA (Signal peptidase complex subunit 1 n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TSQ8_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.690e-24
Identity = 40/79 (50.63%), Postives = 58/79 (73.42%), Query Frame = 1 
Query:    1 DFKGQLLAENLYFYIVILLGAVGWVVGFVMGDFTYTLMGWAAGMVLSVILVVPDWPMFNRNPTKWLDQLPPREGVMPVG 237
            D+KGQ L+E LY++I+I+ GA+ W++GF   DF  T++GW  G++L+ +L VPDWP FNRNP +WL+ +P  E V  VG
Sbjct:   21 DYKGQQLSETLYYWIIIIFGAIAWMIGFFKEDFQVTVIGWGIGVLLATLLCVPDWPWFNRNPIRWLEHIPGAEPVGGVG 99
[Close]
BLAST of mRNA_P-littoralis_Contig74.47.1 vs. uniprot
Match: B8C1V5_THAPS (Signal peptidase complex subunit 1 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1V5_THAPS)

HSP 1 Score: 95.1 bits (235), Expect = 7.590e-24
Identity = 35/69 (50.72%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:    1 DFKGQLLAENLYFYIVILLGAVGWVVGFVMGDFTYTLMGWAAGMVLSVILVVPDWPMFNRNPTKWLDQL 207
            D++GQ L+ENL++YI+IL G++GW+ G+ + DFTY    W  G+ +SV+L VPDWP+FN++P KWL+ +
Sbjct:    2 DYEGQKLSENLFYYIIILFGSIGWIYGYFLQDFTYVFYSWCVGVAISVVLCVPDWPIFNKHPVKWLESV 70
[Close]
BLAST of mRNA_P-littoralis_Contig74.47.1 vs. uniprot
Match: A0A1Z5KKY6_FISSO (Signal peptidase complex subunit 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KKY6_FISSO)

HSP 1 Score: 90.9 bits (224), Expect = 3.490e-22
Identity = 37/72 (51.39%), Postives = 52/72 (72.22%), Query Frame = 1 
Query:    1 DFKGQLLAENLYFYIVILLGAVGWVVGFVMGDFTYTLMGWAAGMVLSVILVVPDWPMFNRNPTKWLDQLPPR 216
            D++GQ LAE +++ I++  G +GWV+G+   DFT     W AG+VLSVIL VPDWP +NR+P KWL+ +P R
Sbjct:    2 DYEGQKLAELIFYIIILTFGCIGWVIGYFQEDFTVVFQAWLAGVVLSVILCVPDWPFYNRHPIKWLESVPDR 73
[Close]
BLAST of mRNA_P-littoralis_Contig74.47.1 vs. uniprot
Match: A0A1E7F4F8_9STRA (Signal peptidase complex subunit 1 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F4F8_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.110e-21
Identity = 37/79 (46.84%), Postives = 55/79 (69.62%), Query Frame = 1 
Query:    1 DFKGQLLAENLYFYIVILLGAVGWVVGFVMGDFTYTLMGWAAGMVLSVILVVPDWPMFNRNPTKWLDQLPPREGVMPVG 237
            D++GQ L+E L+++I I+LG VGWV+G+   +F      W  G+V+S +L VPDWPM+N++P KWLD +P R+ V   G
Sbjct:    2 DYEGQRLSELLFYWITIILGGVGWVIGYFRQEFFIVFKFWLVGVVISAVLCVPDWPMYNKHPIKWLDSVPDRKSVSSSG 80
[Close]
BLAST of mRNA_P-littoralis_Contig74.47.1 vs. uniprot
Match: B7G343_PHATC (Signal peptidase complex subunit 1 n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G343_PHATC)

HSP 1 Score: 89.4 bits (220), Expect = 1.340e-21
Identity = 35/76 (46.05%), Postives = 53/76 (69.74%), Query Frame = 1 
Query:    1 DFKGQLLAENLYFYIVILLGAVGWVVGFVMGDFTYTLMGWAAGMVLSVILVVPDWPMFNRNPTKWLDQLPPREGVM 228
            D++GQ LAE L+++I++  GAVGW++GF   DF      W  G+V+S+IL VPDWP +NR+P +WL+ +P R   +
Sbjct:    2 DYEGQQLAELLFYWIILAFGAVGWIIGFFQQDFLIVFQAWLVGVVISIILCVPDWPFYNRHPIQWLESVPDRRSKV 77
[Close]
BLAST of mRNA_P-littoralis_Contig74.47.1 vs. uniprot
Match: A0A7S3JTW2_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JTW2_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 3.520e-21
Identity = 34/76 (44.74%), Postives = 54/76 (71.05%), Query Frame = 1 
Query:    1 DFKGQLLAENLYFYIVILLGAVGWVVGFVMGDFTYTLMGWAAGMVLSVILVVPDWPMFNRNPTKWLDQLPPREGVM 228
            D+KGQ LAE +Y Y+++++GA+ W+ G++   F  T   W  G+++S+IL VPDWPM+NRNP +WL ++P    V+
Sbjct:   25 DYKGQKLAEMIYLYLIVIVGAIAWICGYIAQSFKVTFTIWLGGLIVSMILCVPDWPMYNRNPVEWLKEIPNTTSVV 100
[Close]
BLAST of mRNA_P-littoralis_Contig74.47.1 vs. uniprot
Match: A0A7S4A4H0_9STRA (Signal peptidase complex subunit 1 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A4H0_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 4.230e-21
Identity = 35/70 (50.00%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:    1 DFKGQLLAENLYFYIVILLGAVGWVVGFVMGDFTYTLMGWAAGMVLSVILVVPDWPMFNRNPTKWLDQLP 210
            D+KGQ L+E +Y  ++  +G+V WV G++  DF  T  GW AG+VL++++ VPDWP+FNRNPT WL+++P
Sbjct:    7 DYKGQKLSEQIYLVLIPAVGSVAWVFGYLAQDFKTTFYGWLAGLVLAMLICVPDWPIFNRNPTPWLEEIP 76
[Close]
BLAST of mRNA_P-littoralis_Contig74.47.1 vs. uniprot
Match: A0A6U3TG41_9STRA (Signal peptidase complex subunit 1 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3TG41_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 3.000e-20
Identity = 35/69 (50.72%), Postives = 48/69 (69.57%), Query Frame = 1 
Query:    1 DFKGQLLAENLYFYIVILLGAVGWVVGFVMGDFTYTLMGWAAGMVLSVILVVPDWPMFNRNPTKWLDQL 207
            D+ GQ LAE +Y++I I  GA GW+ G+V  DF +T+  W  G+ +SV+L VPDWP FNRNP +W D +
Sbjct:    2 DYDGQRLAEMMYYWITIAFGAFGWIWGYVEKDFKFTMYSWGVGVAISVVLCVPDWPWFNRNPVEWRDSI 70
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig74.47.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQZ2_ECTSI1.950e-5291.86Signal peptidase complex subunit 1 n=2 Tax=Ectocar... [more]
A0A7S3HG34_9STRA3.340e-2551.22Signal peptidase complex subunit 1 n=2 Tax=Spumell... [more]
A0A7S1TSQ8_9STRA1.690e-2450.63Signal peptidase complex subunit 1 n=1 Tax=Phaeomo... [more]
B8C1V5_THAPS7.590e-2450.72Signal peptidase complex subunit 1 n=1 Tax=Thalass... [more]
A0A1Z5KKY6_FISSO3.490e-2251.39Signal peptidase complex subunit 1 n=2 Tax=Fistuli... [more]
A0A1E7F4F8_9STRA1.110e-2146.84Signal peptidase complex subunit 1 n=1 Tax=Fragila... [more]
B7G343_PHATC1.340e-2146.05Signal peptidase complex subunit 1 n=2 Tax=Phaeoda... [more]
A0A7S3JTW2_9STRA3.520e-2144.74Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S4A4H0_9STRA4.230e-2150.00Signal peptidase complex subunit 1 n=1 Tax=Pelagom... [more]
A0A6U3TG41_9STRA3.000e-2050.72Signal peptidase complex subunit 1 n=1 Tax=Dictyoc... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig74contigP-littoralis_Contig74:227592..231994 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FQZ2
Preferred nameSPCS1
PFAMsSPC12
Model size270
Max annot lvl2759|Eukaryota
KEGG rclassRC00467
KEGG koko:K12946,ko:K19355
KEGG ReactionR01332
KEGG Pathwayko00051,ko03060,map00051,map03060
Hectar predicted targeting categorysignal anchor
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005783,GO:0005787,GO:0005789,GO:0005829,GO:0005840,GO:0005844,GO:0005911,GO:0006465,GO:0006508,GO:0006518,GO:0006605,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0009506,GO:0009987,GO:0010467,GO:0012505,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016021,GO:0016485,GO:0019538,GO:0022625,GO:0022626,GO:0030054,GO:0030176,GO:0031224,GO:0031227,GO:0031974,GO:0031981,GO:0031984,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0042175,GO:0042788,GO:0042886,GO:0043021,GO:0043022,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045047,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051604,GO:0051641,GO:0051649,GO:0055044,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0098796,GO:0098827,GO:1901564,GO:1902494,GO:1905368,GO:1990904
Exons3
Evalue3.2e-53
EggNOG OGsKOG4112@1|root,KOG4112@2759|Eukaryota
Ec32 ortholog descriptionProbable Spc1 homolog, Subunit of the Signal Peptidase Complex
Ec32 orthologEc-09_003190.1
EC3.2.1.78
Descriptionsignal peptide processing
Cds size270
COG categoryK
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791529.5818622-CDS-P-littoralis_Contig74:227591..2276511680791529.5818622-CDS-P-littoralis_Contig74:227591..227651Pylaiella littoralis U1_48CDSP-littoralis_Contig74 227592..227651 +
1680791529.6037314-CDS-P-littoralis_Contig74:228504..2285911680791529.6037314-CDS-P-littoralis_Contig74:228504..228591Pylaiella littoralis U1_48CDSP-littoralis_Contig74 228505..228591 +
1680791529.6165864-CDS-P-littoralis_Contig74:231871..2319941680791529.6165864-CDS-P-littoralis_Contig74:231871..231994Pylaiella littoralis U1_48CDSP-littoralis_Contig74 231872..231994 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig74.47.1prot_P-littoralis_Contig74.47.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig74 227592..231994 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig74.47.1

>prot_P-littoralis_Contig74.47.1 ID=prot_P-littoralis_Contig74.47.1|Name=mRNA_P-littoralis_Contig74.47.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=90bp
DFKGQLLAENLYFYIVILLGAVGWVVGFVMGDFTYTLMGWAAGMVLSVIL
VVPDWPMFNRNPTKWLDQLPPREGVMPVGAAAEDDEITD*
back to top

mRNA from alignment at P-littoralis_Contig74:227592..231994+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig74.47.1 ID=mRNA_P-littoralis_Contig74.47.1|Name=mRNA_P-littoralis_Contig74.47.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4403bp|location=Sequence derived from alignment at P-littoralis_Contig74:227592..231994+ (Pylaiella littoralis U1_48)
GATTTCAAGGGGCAACTGCTGGCGGAGAACCTCTACTTTTACATCGTTAT
CTTATTGGGGGTGAGTTAAGAACTAAAGGAGGGAGGCAACTTGCGACCCT
ATGGTAAATTAGTACTGGCGTGACACACAGCAACTACTCTCTTGTTCAAG
TTACCAGGCAATTGCCAGATTGCCAGTCCATCGTATCGGATGTCCATATT
TGATTTCTGCTGAGTGTGAGAGCAAGACGTGTCGCGGATGATAGTATTGC
ACTCCCACAACTCGTTTTTTGAGTAAACCCTCGAAGACCTCGCTTCCAAG
GAGAGGGGCAGTGTGCGTTGCCGACGCGTTGTCGGCGCTCGGAGCCGCCG
CAATACCGGCAAAGCTGCCTGCATAGTAGTGTGTGTCGGGAGTTTGTAGT
GTCTACCGGTACAGCTGAGGATCGGATCTCTCTTGATTCTATCTCGCCAC
AAACCTAATGTCTCAGAAAAGACCTGACGTCTCAGAAAATAATTTTCACC
GTCAGTGAATCGGTTGCTGTGCAAATCCTCTTTTCGTATCTTACGTGCTA
TTCATATGATACATACGGAGCACACATATCATACGGATGTCACCACGTTT
TTGAGGGTGTCGCTGTTGAATCCCCGTCCATGGTTCTGCGGCTTCTTTTT
TGCGGCCAATTTCGCCGATGGCCACCACGAGCTCGCGGAAACGCACGATG
TATGCGTCGTCGCCTCCTCTAAAGATATTTCGAGTTGTGCAACGTCACCA
AACCCTCGAGACAACAGTTAGACTATGGTATGTAAGGCTTTTCATTAAAG
ACTCCGTTAAATCATCGTAACGTGTCTATTGTGTCGCCTCGTCATAGTAC
GCCGCTCGCTCATCGTTCATTCTTCGCTGGGACGTTTTTTCTGTTGCATT
CTTTTTTTGTCAGGCTGTGGGTTGGGTCGTCGGCTTTGTGATGGGGGACT
TCACCTACACGCTCATGGGGTGGGCTGCAGGAATGGTGCTGTCTGTTATT
GTGAGTTCAACACACCAATTGTGGGGCACAGGACCGGTCCACTCGTAACA
AATATCTCATCCAAAATCGAGTACGAGATTCAAGGCGGTTTCTTGTAGAG
CCAGATTTTTTTTTCAGGTTTTGATAGAATCCGAATTTTTTTAAATCAGG
CTTCTTATAGGCTCGGAATACACTTTTCTCCGAACAATATTTATCGAATA
AAAATTTCCGATCAGACACTGATCGGATTTCTGCCGGAAAATCGGACTTT
TTCCGAACGCTGGATCAGTTCGGAAAATACGATCGGAAAATGTGTAAAAA
ATTATGCGTGATGTTGTCTCTCTCTTTGTGTGGTTTGTGTCACCAACTAA
CAATATACGAAGTATGTGAACAACAGTAGTGAGCGATAGACCAGCCACTG
GTCAAAGCAAACAGAGCAGCAGCAGAGGAGAGCTGCTGCCACTACTTTCT
GTGTTGTTGCAGCTGCTGCTGCTTGCTGCTGTCCATATATGTGCCCACCA
TGTTTCTGTGTATGCTTGCCCGTGTCATCATTCATTCCATCGTGTTCATC
AGCAACCAAAACCAACCGTATGTAGCACGAGCAGCATCATCATCAGCACA
GCAGCAGGAGGAGGAGTATCATAGCTCCTTTCCTCTGAGTGAGACCAGTT
TGTATCTTCGCTCGTAACTCCCCAATGAATAAAGCCACAGCGATGACAAG
CCTATCTCCCGTCAGCTGTGCGTATGGCCCCCTTCGTGTGGTGATCGTTT
GGGTGAGGATCACGCTGGCATGTTCGCAAAATGAGCTTGCTCGTGGCTGT
GACATGTTGTAAAAAAGAGCCCGAGCTATGATCTCCTTTGTCTACTGCTG
TACAACTTGTACTGTGCGTCTTTTGTACACACATACAGCAGTATATAAAT
AATGCTGCTGTACAGCAGACCGGCTGATAGATCTTTGTCCATTTTTTTCG
CATGAGTTGGCCATGAGCAAACCCACGTTGCGAATGTATTGATGTAACCC
TAACCCAAGCGACCACGTCACGAGGTGAATCATCTACATAGCTCACGGAA
GATGCCTCCGTCATTGCTGTGGCTTCATTCGTCCAAACGGGGTGAACGAA
GAAGCAAACCCGTGGCGAACAACAGACAAGACGTGCCTTCTGTACGGGAC
AAGCAACGGAACTATTTTTTGCTTTTTTTTTAATCGAATGCATGCATCAT
ATGTTTTGATATCATCAACAGCGTGCCGATCCCGTGATGGCTCAAACGAT
CACTGTTTGAGAAGGCCCATCTACGCAGCTGGCGGGGGATGGGTTTGTCA
TCACTGTGTCGCCATTCGTTCGAAAGTTATGAGCGGCGATGCAAACGGGT
CTCAGGGTGGCTCTTGTCGAATTTTTGACCGTATTCAAAATCAAAGACAA
AATTGGATTTTGATTTTGATTCCGTGTTGGGTCCGATCTGCTGCAGCTTG
CGTTTGTCCAAAATCAAAAGCGGACGCATAAAAAAAAAACATTCACAGAC
AGGTGGTGTGTGATATGAGCATGCCGTGTCTCGATTCCAAGACACGTGCG
GGAACTGTCGTGGCTCAAACGAAGAGCACGATGGTGCCCCACGTCGCCCT
GATTCAGGCGCGTTGGTAGTTCTCTGTTTGGGATCGATAACCAAAAAACT
CGGCACGAGATGAGTAAGTAAGTGTTACACATCTGCCCTTTTTTGGAGGT
AGCGGCTGTGTCAGCTGCGCAAACAGCAGTTGAGCAACAAACTTCCTGCA
CACTTCTACACACTTGAGTGCTGCTCTTCGGATTCTGTTCGGAATTCGCT
CAAACAAAGTGATCCATTTTCTGCGTGATACCAGCTTTCTCCAGAGCTAG
CACATGTGTACAGCCGGGGTCTACACGTTGTGCTGTAGTCAGCTAAGCAA
ACATATGTAGTGTGTTGTCATCCCATATTCTCTGGCACACTAGTCTGCAC
CTCGCGGTTCAAACTACAGGCTAGGCCCATCGACGGGGTCACGCAGGAGG
AAGGTCAACACAGGAGGAGTTACCCCCACCTTCCTTCTGCGGTACATGTA
GTGTGCACCATGTACTCCCGGAAAGCACAGCAAACACCTCTCTGTCTCGT
GTTCTAAGTCTATTCGTTTTTGAGCCGCGTTTATGATCTATTGGCGGGAA
GGAAAGTGTTATTTACTTTCCTTCCCGTTTCGGAAGAAAAAAACTGAAAT
CCAAGACGTGGTGCGGGCGGATGGATTGTGGACCTATCAGTGACATATTC
TGAGTTTAATTTTTGCTTTTTGATTTTTGCGTGGGCCCAAAACGCTTTGA
CAAGAGCCACCCTCAGCGCAAAAAAATCACCATGCGGTCCTTCGATGCAG
ATATATACTCTGGAGCCGACTCTTCAACCAACCACCTAAAGAAAAGGATC
ACCGAAAATCCGATCACCCATCACCTCTTATTAGAACGGCGGATCGTCAG
CCGTTGGCCGGAAAAAGTTCGTTCGGATTCTATCAAATAAATTTTCCGGC
CCTACAAGAAACCGCCTAAAAACAAGAAGAGAAATTCGGTCTAAAATGTC
TAAAATGTCGGGCTCGGCGACCAGCGCCACACTTTATCCTAACTGAAACT
GATAAGACTTGCAAAGAGGTGGTAAAGTAACTCACAAGAGGTGTTTCTTG
CGAGAGGGCCGGTAATGCAGTGGACTTTGAAGCATCTCGTCTTCCAATCA
CTACGGCCCCGCTTTCGAGACCCTCCGACAAGTTTACTGTACACACCTCT
CTTCGATCCACCTGCCTAATTAGTTTATCATCCCGCAACTTTTACTGTTA
ACTGCTGTGGTGTGAGAAGGAACGAATGGCGTAGCTCTTTGCTTTGTGCG
TTGTATGTTGCGTGTCTATATTGACTCGCCTCTTCATTGGGACAACCATC
TTCAGCTTCGCGTGTTACGCTGGAGTGGCAGAAAATGCTGACGATGACAT
CGTGTGAAGAGAGATGTTCGGGGTTACTCGCCTGGAGTATCGCGTGGGCG
CGGGTTGCGACGAAAGCAAAGTCTGTCTTTCTTTTTGAAAACGTTGCAAC
CCAACAACTCGACTTGGCGTACGCTCCCGTTGCAAGCGCCCCCATGATTC
ACGATAAAACGTCTTGATCGCCGCTTTGACTTGGTTTTGCCTCTTGTAGA
TACCATTCTCTTGGTTTCTCACGATCGATGGCTTTCGGCTTCGGTGGGGG
CTACTCCGGTTTCTAACGTTTGCCTCTCTTTCCCAATCTGTATCATCCGC
TTTTTCCGTATGTCCGCCTCGGTGCGTCAGCTTGTAGTGCCGGACTGGCC
GATGTTCAACCGAAACCCGACAAAGTGGTTGGACCAGCTCCCACCAAGGG
AAGGGGTTATGCCCGTGGGGGCGGCAGCAGAAGATGATGAAATTACTGAC
TGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig74:227592..231994+

>mRNA_P-littoralis_Contig74.47.1 ID=mRNA_P-littoralis_Contig74.47.1|Name=mRNA_P-littoralis_Contig74.47.1|organism=Pylaiella littoralis U1_48|type=CDS|length=270bp|location=Sequence derived from alignment at P-littoralis_Contig74:227592..231994+ (Pylaiella littoralis U1_48)
GATTTCAAGGGGCAACTGCTGGCGGAGAACCTCTACTTTTACATCGTTAT
CTTATTGGGGGCTGTGGGTTGGGTCGTCGGCTTTGTGATGGGGGACTTCA
CCTACACGCTCATGGGGTGGGCTGCAGGAATGGTGCTGTCTGTTATTCTT
GTAGTGCCGGACTGGCCGATGTTCAACCGAAACCCGACAAAGTGGTTGGA
CCAGCTCCCACCAAGGGAAGGGGTTATGCCCGTGGGGGCGGCAGCAGAAG
ATGATGAAATTACTGACTGA
back to top