mRNA_P-littoralis_Contig74.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig74.6.1
Unique NamemRNA_P-littoralis_Contig74.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig74.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig74contigP-littoralis_Contig74:5883..7445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size334
Hectar predicted targeting categoryother localisation
Exons2
Cds size228
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791526.5420914-UTR-P-littoralis_Contig74:5882..59871680791526.5420914-UTR-P-littoralis_Contig74:5882..5987Pylaiella littoralis U1_48UTRP-littoralis_Contig74 5883..5987 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791526.552973-CDS-P-littoralis_Contig74:5987..61401680791526.552973-CDS-P-littoralis_Contig74:5987..6140Pylaiella littoralis U1_48CDSP-littoralis_Contig74 5988..6140 +
1680791526.5640385-CDS-P-littoralis_Contig74:7370..74451680791526.5640385-CDS-P-littoralis_Contig74:7370..7445Pylaiella littoralis U1_48CDSP-littoralis_Contig74 7371..7445 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig74.6.1prot_P-littoralis_Contig74.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig74 5988..7445 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig74.6.1

>prot_P-littoralis_Contig74.6.1 ID=prot_P-littoralis_Contig74.6.1|Name=mRNA_P-littoralis_Contig74.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=76bp
MDGTTLARTHSHNINNDDGERRQAFRALHNFLRRATEKTCRSAEHQECSE
MTLYVIHCRCYGSVPISLALYYAHSL
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mRNA from alignment at P-littoralis_Contig74:5883..7445+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig74.6.1 ID=mRNA_P-littoralis_Contig74.6.1|Name=mRNA_P-littoralis_Contig74.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1563bp|location=Sequence derived from alignment at P-littoralis_Contig74:5883..7445+ (Pylaiella littoralis U1_48)
CCAGGGGGCGGGGCGAGCCGGGGTGGCTCGTAGCACGTTTGGTTACATTG
CTGGTGCGCCGAACCACATCCCGAATGGCAGTTTGTAGATTGGCGCCCAG
GAGAGATGGATGGGACGACGCTCGCACGCACACACTCACACAATATAAAC
AACGATGATGGCGAAAGACGCCAGGCGTTTCGTGCTCTACATAATTTCTT
ACGGAGGGCTACTGAGAAAACCTGTCGATCGGCCGAGCACCAGGAGTGCT
CTGAGATGGTGAGAGGGCGGCTGCCCCCCCCCCCGTTGGCGCTTCGTGCA
AGCATGACTAACCTATCTGCCTGTCCGGTAAAATCTGGCGTGTATTATTG
CGCTATTATGCGTTCCGGCTTGTTGGCGATCTCGATAGGTATCATCTTGA
TCTTCTATCGATTACGACATGCATGATCATCAGCAAGCGCGCACACACGT
ACACACATACCTACATACCTCTGGGAAAAGGGGGAGCGGATGTTTGTTTG
TGTATCTTTATTTTTTGTGTAAGAGCCCGGATTAACGGGGAATTGAAAAA
AACGAAATTGCGAAAAAGAAAACGAAATTGGGCTCTGATTGGTCCGAGAA
AAAAAGAGAAAGAGGCGTTATTTTCTTTGAAAGAGGCGTGTCTCCGATTC
AGCACACACCGAGCAGGCGGTATTTCGTTTTTTTCTTCGCGAAAATAAAG
TGTTTTGGACCTTTTTTTTTTGCGAAAACGAAAACGAAATGCCGGAGTGT
CGTAGCTTGGGGAGGCTTGATTCAACAGCCTCCCAGGCTCCATGGCAACC
AGGAAGTCGGCGCAACAGCCAGCTCGCAACAGCCAGGTAGCAAGAGCAGG
ACACGACAGCGATATAGGCAAGGAGAGAACGCTCGCTCACGGAACACAAT
CACAGGAGAACTTCTGCTGTTGTCGTCATGTGTTGTTTGTTGCACATCAC
ACCGTATCCGTTGCAAACTATGCGCGCGCTAGGGTTTGTACTTCATGTTT
GGCGTTGTCTCATCGTATTCGGGTCCTCGGTGTCCCTGTGGAAAAACGCG
TTAATACCCAACAACGATTATTTTTTTATCTTTTCCATAAGAACGAAGTT
CTTTCGTTTTCTTTTTCGCAATTTCGTTTTTTTCAATTCCCCGTTAATAC
GGGCTCTAAGGGTTCACGGTAGTCGACTATCGGGCGTCGTCGTATGTAAT
GCTTAGGGGTGGGGGGGGCAGGGAGTAGAGCGGAGAGTTACGGTGTACTT
CGTAGTATAAAAAAAAAGGGCAACACATAAGAGTGTTTTTTTTTTCTTTC
CCCGCCCTCTTTGAACTTTTCACGACTGCACAGCACTACTGTAGTGTGTG
TCGGTTTTTTTTCTTCCCTCCTTTCTTTTTCGAGTCGCGGTAGTGGTGGT
GAAACCTCCAGCACCACGTTGACTGCCGTTGCATACGGCCCCTCCTGCCC
CTCCCCTTCGATGTGTCGACTGTTTCTTGCTTTTGCAGACCCTGTACGTC
ATACACTGCCGGTGCTACGGCAGCGTGCCCATTTCGCTGGCGTTGTACTA
CGCCCACTCACTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig74:5883..7445+

>mRNA_P-littoralis_Contig74.6.1 ID=mRNA_P-littoralis_Contig74.6.1|Name=mRNA_P-littoralis_Contig74.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=228bp|location=Sequence derived from alignment at P-littoralis_Contig74:5883..7445+ (Pylaiella littoralis U1_48)
ATGGATGGGACGACGCTCGCACGCACACACTCACACAATATAAACAACGA
TGATGGCGAAAGACGCCAGGCGTTTCGTGCTCTACATAATTTCTTACGGA
GGGCTACTGAGAAAACCTGTCGATCGGCCGAGCACCAGGAGTGCTCTGAG
ATGACCCTGTACGTCATACACTGCCGGTGCTACGGCAGCGTGCCCATTTC
GCTGGCGTTGTACTACGCCCACTCACTC
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