mRNA_P-littoralis_Contig739.27.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig739.27.1
Unique NamemRNA_P-littoralis_Contig739.27.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig739.27.1 vs. uniprot
Match: A0A6H5JXC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXC7_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 2.180e-13
Identity = 29/48 (60.42%), Postives = 35/48 (72.92%), Query Frame = 2 
Query:   83 EATFKSFRNQACYDAARALNVRGAGVQVRRNRCFEKACQALWPGDDPI 226
            E T K  RN+ACYDA  ALN RG GVQ+RR +CF  AC+A+WP D P+
Sbjct:  122 EITTKRMRNKACYDAGTALNARGRGVQLRRQKCFTHACRAVWPDDQPL 169
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig739.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JXC7_9PHAE2.180e-1360.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig739contigP-littoralis_Contig739:115363..116671 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size252
Hectar predicted targeting categoryother localisation
Exons2
Cds size234
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791526.451695-CDS-P-littoralis_Contig739:115362..1155001680791526.451695-CDS-P-littoralis_Contig739:115362..115500Pylaiella littoralis U1_48CDSP-littoralis_Contig739 115363..115500 -
1680791526.4628267-CDS-P-littoralis_Contig739:116559..1166551680791526.4628267-CDS-P-littoralis_Contig739:116559..116655Pylaiella littoralis U1_48CDSP-littoralis_Contig739 116560..116655 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791526.4778137-UTR-P-littoralis_Contig739:116655..1166711680791526.4778137-UTR-P-littoralis_Contig739:116655..116671Pylaiella littoralis U1_48UTRP-littoralis_Contig739 116656..116671 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig739.27.1prot_P-littoralis_Contig739.27.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig739 115363..116655 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig739.27.1

>prot_P-littoralis_Contig739.27.1 ID=prot_P-littoralis_Contig739.27.1|Name=mRNA_P-littoralis_Contig739.27.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=78bp
MAGLIAAVETEDVRQTASRRQQEATFKSFRNQACYDAARALNVRGAGVQV
RRNRCFEKACQALWPGDDPIDEWTAAGF
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mRNA from alignment at P-littoralis_Contig739:115363..116671-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig739.27.1 ID=mRNA_P-littoralis_Contig739.27.1|Name=mRNA_P-littoralis_Contig739.27.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1309bp|location=Sequence derived from alignment at P-littoralis_Contig739:115363..116671- (Pylaiella littoralis U1_48)
AACTTGTGGCGTCGCGATGGCGGGACTTATCGCTGCTGTCGAAACGGAGG
ACGTCCGGCAAACGGCCTCTCGGAGGCAGCAGGAGGCTACATTCAAATCC
TTCAGGAATCAGGTCAGCACTCGCGGGATGAGAGAACATGTACGTGAGGG
TTGCTGTAGTTCGGCGGCTGCTGCTGCGGGTGTTGTCGCACATAGTGGCC
ATGCCGTGTTGTCGACTGAAGTGCGTTTGCTTCGTCGCTTCGTGCTTGAG
AATTTGCTGCAGCAGTTACTTCTTGTATCATACATTTCAAAGCACACTAC
TGCAGTAGTTCGAAATGTTTCTGCATCTGCCTCTACCTTACTCTGCATAA
TAACATCATATCGTATCATACAGTGGATAACTATGTATACTTTTACTTGT
CTGATACGTACCGGTATCTTACAACAGCAGTCCCAAACTTGCATGATAGT
AGTATCGCATCACGTGATACACACCACCAGGTACAGCAGTAGTGTTCACG
CGCCAAGATTTACTTCGAAAGCACGAAGTTCCGGGTGCATACAAGTTCGC
CTGATGGGTTGGTGCATACAAGTTCGCGTCGTTTGTGTACATATTGAGTT
GCATGCACACCCCTTTCCAGGTTCCAAGAATTCAAAGTGCATCGTTCGAT
GTTGTACAGTATATAGGTATCTTATGCTTCTGCACTTGGTATGTCACACC
GTGAGCATACCGGTATCGCACGTGTGCATGGCGAGTAAATTGTGTGCAGT
TTTGAACTGTTTCAAGTTCAAATGTCGTATGGATAGTAAAATCATATCAT
AGGCGGTGATATATTCATTTCTGGCGATGATTTCTGTATATTCCATATAC
CGGATGTTACAGTACATACCACACTCCCTAGGCCGATGTTTACTGCTCGA
TTGCTGCGAAACAAAGAGAATGCCAAAACCAACTTACCAAGTACATGTTT
TCGAGGAGGACCTTACAACATCTTTATGATATCACCCCTATCGGCAGTGG
CACTCGTCTTGATCCTTTCAAATCAGACCTGGGTTTGTTTTGTTCGCTGG
CCTTAGTACATCACATACTTCGTATATGAAGACTACACCAAGTTATTGTG
CGCTTGTACAGTTTTTGCCTCATTTGCGAGTTTTGATCGCTTCCAAAACC
GTGTGCCGAACCCCGTGGCAGGCGTGTTATGACGCGGCGCGCGCCCTGAA
TGTGCGGGGAGCGGGGGTTCAAGTCCGTCGCAACAGATGCTTCGAGAAAG
CGTGCCAGGCGCTTTGGCCTGGGGACGATCCGATTGACGAATGGACTGCT
GCTGGTTTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig739:115363..116671-

>mRNA_P-littoralis_Contig739.27.1 ID=mRNA_P-littoralis_Contig739.27.1|Name=mRNA_P-littoralis_Contig739.27.1|organism=Pylaiella littoralis U1_48|type=CDS|length=234bp|location=Sequence derived from alignment at P-littoralis_Contig739:115363..116671- (Pylaiella littoralis U1_48)
ATGGCGGGACTTATCGCTGCTGTCGAAACGGAGGACGTCCGGCAAACGGC
CTCTCGGAGGCAGCAGGAGGCTACATTCAAATCCTTCAGGAATCAGGCGT
GTTATGACGCGGCGCGCGCCCTGAATGTGCGGGGAGCGGGGGTTCAAGTC
CGTCGCAACAGATGCTTCGAGAAAGCGTGCCAGGCGCTTTGGCCTGGGGA
CGATCCGATTGACGAATGGACTGCTGCTGGTTTC
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