mRNA_P-littoralis_Contig739.21.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig739.21.2
Unique NamemRNA_P-littoralis_Contig739.21.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig739.21.2 vs. uniprot
Match: A0A6H5JW40_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW40_9PHAE)

HSP 1 Score: 216 bits (549), Expect = 1.740e-59
Identity = 109/261 (41.76%), Postives = 149/261 (57.09%), Query Frame = 1
Query:  181 TFFNFMFPMAVVALLVKETNDYFTFCTTTPTRNEDDKREDRHKAKEPTNGRASWPEGGITANMMYTVIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRHP--DGSYDEGWDALWHIRAFETMLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWAGCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDN 957
            T F+ MFP   + L V +TN Y   CTT       D R+     K  T G  + PE       +Y ++GI +T+GL +   +  HW  S + D+ LVR+ M+RD+F L+Y RF H +   +P R    D + +  +D+ WHIR  E +LN  W+      QW+ +DEQMV  V   A +++R+ PKKPI +G+KL+A+    GYCF S  DGG  GDPKLR W  CPLGRT R VL VL GAC    +++  SG Y+AMDN
Sbjct:  638 TCFDMMFPDEAIDLFVDKTNKYVNLCTTPSLPGAKDTRKAHQVEKTRTLGMVTLPEPAFERKHIYGMLGITITMGLTKKTRMRKHWSRSLHDDYPLVRECMSRDLFELLYCRFIHCSDGNAPPRWAGEDKTPNPEFDSKWHIRELEDILNNAWTENMDFNQWLCYDEQMVKTVSTFAHYLMRHSPKKPITHGMKLFAICDIEGYCFVSSVDGGMNGDPKLRVWFDCPLGRTTRHVLHVLLGACKKFGDKIDGSGAYIAMDN 898          
BLAST of mRNA_P-littoralis_Contig739.21.2 vs. uniprot
Match: A0A6H5L3T1_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3T1_9PHAE)

HSP 1 Score: 199 bits (506), Expect = 3.050e-55
Identity = 101/197 (51.27%), Postives = 137/197 (69.54%), Query Frame = 1
Query:   13 RGTGKTFADFLHKKETDGCPKSFRPSKSTLDSDEYPSFDPSKLGRFKSAQLGQLAFTFFNFMFPMAVVALLVKETNDYFTFCTTTPTRNEDDKREDRHKAKEPTNGRASWPEGGITANMMYTVIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRHPDGSYDEGWDALWHIR 603
            RG G  + D   K+E +G   SF+PSK TLD+   P+FDP KLGRF   +LG+LAFTFF+ MFP AV+ LLV++TN+YF FC +T        +E RH+ ++   G++SWP+ GIT +MM  VI I+LT+GLV+LP + +HW    +HD+KLVR  + RDMFLLIY RFFHMA + +P+R   G+ + GWD+L HIR
Sbjct:  441 RGDGHQYYDCHRKREGEGEDVSFKPSKKTLDA--LPAFDPDKLGRFSVDELGELAFTFFSIMFPAAVILLLVRKTNEYFNFCRSTKNPKG---QEQRHRDQKARKGKSSWPKKGITKSMMQGVISIILTIGLVQLPAMHDHWSCHSFHDYKLVRACLPRDMFLLIYGRFFHMASSGAPERLQGGTTEPGWDSLHHIR 632          
BLAST of mRNA_P-littoralis_Contig739.21.2 vs. uniprot
Match: A0A6H5JFU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFU5_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 4.080e-53
Identity = 100/197 (50.76%), Postives = 134/197 (68.02%), Query Frame = 1
Query:   13 RGTGKTFADFLHKKETDGCPKSFRPSKSTLDSDEYPSFDPSKLGRFKSAQLGQLAFTFFNFMFPMAVVALLVKETNDYFTFCTTTPTRNEDDKREDRHKAKEPTNGRASWPEGGITANMMYTVIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRHPDGSYDEGWDALWHIR 603
            RG G  + D   K+E +G   SF+PSK T+ +   P+FDP KLGRF   +LG+LAFTFF+ MFP AV+ LLV++T +YF FC +T    E   +E RH+ K+   G++SWP+ GIT  MM  VIGI+L +GLV+LP + +HW    +HD+KLVR  + RDM LLIY RFFHMA + +PKR  DG+ + GW +L HIR
Sbjct:  647 RGDGHQYYDCHRKREGEGEDVSFKPSKKTIGA--LPAFDPDKLGRFSVDELGELAFTFFSIMFPAAVILLLVRKTYEYFNFCRSTKNPKE---QEQRHRDKKARKGKSSWPKKGITKRMMQGVIGIILAIGLVQLPAVHDHWSCHSFHDYKLVRACLPRDMSLLIYGRFFHMASSGAPKRLQDGTTEPGWGSLHHIR 838          
BLAST of mRNA_P-littoralis_Contig739.21.2 vs. uniprot
Match: A0A6H5KMJ3_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMJ3_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 1.950e-47
Identity = 82/194 (42.27%), Postives = 117/194 (60.31%), Query Frame = 1
Query:  379 VIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRH-PDGSYDEGWDALWHIRAFETMLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWAGCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDN 957
            +IGI +T+GL +   +  HW  S + ++ LV++ M RD+F L+Y RF H +   +P+R  PDG  +  +D+ WHIR  E +LN  W+       W+S+DEQM+  V + +  +  Y P KPIK+G+KL A    + Y   S  DGG  GDPKLR +  CPLGRT R VL VL G C  L +++  SG ++AMDN
Sbjct:   33 MIGIFITMGLTKKVRMRKHWSRSAHDNYPLVQKCMPRDVFELLYCRFLHCSDPNAPERLLPDGEENPDYDSKWHIRELEEILNTAWAANVECDNWLSYDEQMIKTVSKYSSKVSFYCPAKPIKHGMKLLAACDITSYSLTSSVDGGMKGDPKLRPYMDCPLGRTTRHVLHVLLGECGVLRQKIDGSGLFIAMDN 226          
BLAST of mRNA_P-littoralis_Contig739.21.2 vs. uniprot
Match: A0A6H5KPD8_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPD8_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 2.470e-46
Identity = 84/204 (41.18%), Postives = 111/204 (54.41%), Query Frame = 1
Query:  346 EGGITANMMYTVIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRHPDGSYDEGWDALWHIRAFETMLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWAGCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDN 957
            E G     +Y+V G              +H  V  + ++ +VR  M RD+F+L Y RFFH+APA       D  YD       HIR  E +LN+ WS     G W+S+DEQMV    R    ++RY   KPIK+G+K WA+ C SGY F    DGGF GD KLR +A CPLGR+ R V++VL  AC   + +++  G  VAMDN
Sbjct:   26 EYGFERKHLYSVTGXXXXXXXXXXXXXXDHCGVEAHDNYPMVRACMPRDLFVLFYGRFFHLAPATGKLNKDDPKYD----CKHHIRKLEDVLNKCWSELVEPGAWLSYDEQMVKSTARVMLALMRYNKAKPIKHGIKCWAICCPSGYSFVQSIDGGFSGDIKLRPYASCPLGRSARTVMYVLLEACETFSNKIIGKGITVAMDN 225          
BLAST of mRNA_P-littoralis_Contig739.21.2 vs. uniprot
Match: A0A6H5JJP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP9_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 6.150e-43
Identity = 79/177 (44.63%), Postives = 110/177 (62.15%), Query Frame = 1
Query:  433 HWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRHP--DGSYDEGWDALWHIRAFETMLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWAGCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDN 957
            HW  S + D+ LVR+ M+RD+F L+YSRF H +   +P R    D + +  +D+ WHIR  E +LN  W+      +W+ +DEQM+  V   A +++R  PK+PI +G+KL+A+    GYCF S  DGG  GDPKLR W  CPLGRT R VL VL GAC    +++  SG ++AM N
Sbjct:  668 HWSRSLHDDYPLVRKCMSRDLFELLYSRFIHCSDGNAPPRWTGEDKTPNPEFDSKWHIRELEDILNNAWTENMDFNEWLCYDEQMMRTVSTFAHYLMRDNPKEPITHGMKLFAICDIEGYCFVSSVDGGMNGDPKLRVWFDCPLGRTTRHVLHVLLGACKKFGDKIDGSGVHIAMSN 844          
BLAST of mRNA_P-littoralis_Contig739.21.2 vs. uniprot
Match: A0A6H5KCC7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCC7_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 8.390e-40
Identity = 78/194 (40.21%), Postives = 112/194 (57.73%), Query Frame = 1
Query:  379 VIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRH-PDGSYDEGWDALWHIRAFETMLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWAGCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDN 957
            +IGI +T+GL +   +  HW  S + ++ LV++ M+RD+F L+Y RF H +   +P+R  PDG  +  +D+  HIR  E +LN  W+     G W+S+DEQM+  V +              + G+KL A    +GYC  S  DGG  GDPKLR +  CPLGRT R VL VL G C  L +++  SG ++AMDN
Sbjct:   33 MIGIFITMGLTKKVRMRKHWSRSAHDNYPLVQKCMSRDVFELLYCRFLHCSDPNAPERLLPDGEENPDYDSKRHIRELEEILNTAWATNVECGNWLSYDEQMIKTVSK-------------YEQGMKLLAACDITGYCLTSSVDGGMKGDPKLRPYMDCPLGRTTRHVLHVLLGECGVLRQKIDGSGVFIAMDN 213          
BLAST of mRNA_P-littoralis_Contig739.21.2 vs. uniprot
Match: A0A6H5KQZ5_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ5_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 2.030e-39
Identity = 73/158 (46.20%), Postives = 94/158 (59.49%), Query Frame = 1
Query:  484 TRDMFLLIYSRFFHMAPAPSPKRHPDGSYDEGWDALWHIRAFETMLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWAGCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDN 957
            T ++F+L Y RFF++APA       D  YD       HIR  E + N+ WS     G W+S+DEQMV    R    ++RY   KPIKNG+K WA+ C SGYCF    DGGF GD KLR +A CPLGR+ R V++VL  AC   + +++  G  VAMDN
Sbjct:    6 TTNLFVLFYGRFFNLAPATGKLNKDDPQYD----CKHHIRKLEDVFNKCWSELVEPGAWLSYDEQMVKSTARVMFALMRYNKAKPIKNGIKCWAICCPSGYCFVQSIDGGFSGDIKLRPYASCPLGRSARTVMYVLLEACETFSNKIIGKGITVAMDN 159          
BLAST of mRNA_P-littoralis_Contig739.21.2 vs. uniprot
Match: A0A6H5KG44_9PHAE (DDE_Tnp_1_7 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG44_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 1.750e-32
Identity = 61/119 (51.26%), Postives = 76/119 (63.87%), Query Frame = 1
Query:  601 RAFETMLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWAGCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDN 957
            R  E +LNE WS     G W+S+DEQMV    R    ++R+   KPIK G+K WA+ C SGYCF    DGGF GD KLR  A CPLGR+ R VL+VL  ACP  +++++ SG  VAMDN
Sbjct:    3 RELEDLLNECWSKLVEPGAWLSYDEQMVKSTARAMFALMRFNKTKPIKTGIKGWAICCPSGYCFVQSIDGGFSGDIKLRPHATCPLGRSARTVLYVLLEACPTFSDKIVGSGITVAMDN 121          
BLAST of mRNA_P-littoralis_Contig739.21.2 vs. uniprot
Match: A0A6H5KJJ0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJJ0_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 9.530e-31
Identity = 72/196 (36.73%), Postives = 107/196 (54.59%), Query Frame = 1
Query:  379 VIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRHPDGSYDEGWDALWHIRA---FETMLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWAGCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDN 957
            +IGI +T+GL +   +  +W  S + ++ LV++ M+  + L  + R    +      R  + S       L+H+RA    E +LN  W+       W+S+DEQM+  V + +  +  Y P KPIK+G+KL A    +GYC  S  DGG  GDPKLR +  CPLGR  R VL VL G C  L +++  SG ++AMDN
Sbjct:   33 MIGIFITIGLTKKVRMQKNWSRSAHDNYPLVQKCMSVLLQLGWWGRDRRGSKGTGAPRKVEDS-PPSTAPLFHVRAVWELEEILNTAWAANVECDNWLSYDEQMIKTVSKYSSKVSFYCPAKPIKHGMKLLAACDITGYCLTSSVDGGMKGDPKLRPYMDCPLGRATRHVLHVLLGECGVLRQKIDGSGVFIAMDN 227          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig739.21.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JW40_9PHAE1.740e-5941.76HTH La-type RNA-binding domain-containing protein ... [more]
A0A6H5L3T1_9PHAE3.050e-5551.27DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JFU5_9PHAE4.080e-5350.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMJ3_9PHAE1.950e-4742.27DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KPD8_9PHAE2.470e-4641.18DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JJP9_9PHAE6.150e-4344.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCC7_9PHAE8.390e-4040.21DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KQZ5_9PHAE2.030e-3946.20DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KG44_9PHAE1.750e-3251.26DDE_Tnp_1_7 domain-containing protein n=2 Tax=Ecto... [more]
A0A6H5KJJ0_9PHAE9.530e-3136.73DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig739contigP-littoralis_Contig739:110194..112453 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog400682.PAC_15707198
PFAMsDDE_Tnp_1_7
Model size958
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.58e-14
EggNOG OGs2CXJS@1|root,2RY1K@2759|Eukaryota,39VGM@33154|Opisthokonta,3BJCI@33208|Metazoa
DescriptionpiggyBac transposable element-derived protein
Cds size957
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791526.381874-CDS-P-littoralis_Contig739:110193..1104271680791526.381874-CDS-P-littoralis_Contig739:110193..110427Pylaiella littoralis U1_48CDSP-littoralis_Contig739 110194..110427 +
1680791526.3966343-CDS-P-littoralis_Contig739:110643..1110111680791526.3966343-CDS-P-littoralis_Contig739:110643..111011Pylaiella littoralis U1_48CDSP-littoralis_Contig739 110644..111011 +
1680791526.4080317-CDS-P-littoralis_Contig739:111598..1117441680791526.4080317-CDS-P-littoralis_Contig739:111598..111744Pylaiella littoralis U1_48CDSP-littoralis_Contig739 111599..111744 +
1680791526.4178114-CDS-P-littoralis_Contig739:112244..1124531680791526.4178114-CDS-P-littoralis_Contig739:112244..112453Pylaiella littoralis U1_48CDSP-littoralis_Contig739 112245..112453 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig739.21.2prot_P-littoralis_Contig739.21.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig739 110194..112453 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig739.21.2

>prot_P-littoralis_Contig739.21.2 ID=prot_P-littoralis_Contig739.21.2|Name=mRNA_P-littoralis_Contig739.21.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=319bp
GRRDRGTGKTFADFLHKKETDGCPKSFRPSKSTLDSDEYPSFDPSKLGRF
KSAQLGQLAFTFFNFMFPMAVVALLVKETNDYFTFCTTTPTRNEDDKRED
RHKAKEPTNGRASWPEGGITANMMYTVIGIVLTLGLVRLPEIANHWDVSD
YHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRHPDGSYDEGWDALWHI
RAFETMLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNG
LKLWAVACFSGYCFASYTDGGFVGDPKLRKWAGCPLGRTCRMVLFVLFGA
CPNLAEQLLQSGTYVAMDN
back to top

mRNA from alignment at P-littoralis_Contig739:110194..112453+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig739.21.2 ID=mRNA_P-littoralis_Contig739.21.2|Name=mRNA_P-littoralis_Contig739.21.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=2260bp|location=Sequence derived from alignment at P-littoralis_Contig739:110194..112453+ (Pylaiella littoralis U1_48)
GGCAGGAGGGATCGCGGCACCGGGAAGACGTTTGCGGACTTTTTGCACAA GAAGGAAACTGACGGGTGCCCGAAGTCGTTTCGGCCGTCGAAGTCGACCC TCGATTCGGATGAGTATCCAAGTTTCGACCCGTCGAAACTGGGGCGTTTC AAGAGTGCGCAACTGGGACAGCTGGCATTCACCTTTTTCAACTTCATGTT CCCCATGGCGGTCGTCGCTCTACTTGTCAAGGAGGTGATACATTGTACCC ATTATGTCGAGCAGCAGCTTCAAAAGCGGAATGAACGCGCGTATGGGGAA ATTTCGAGGATCTTTCTTTTAGGGGAACGCGGAACACGACATTACCCCCC TCCCCGCCCCCACTTATTTTTTCCATGAAATAGTGCAACGTCCAAGGCTC ACCGCAAAACGTTTGCGTTATTTATTCCCGTCCCCCGTCTCACAATACAG ACGAACGACTACTTCACCTTCTGCACCACAACACCAACTCGCAATGAGGA TGACAAGCGTGAAGATCGACACAAGGCGAAGGAACCCACGAATGGGCGCG CGTCGTGGCCCGAGGGTGGCATCACCGCGAACATGATGTACACCGTCATC GGCATCGTCTTGACGCTGGGACTTGTGAGGCTTCCGGAAATCGCAAATCA CTGGGACGTGAGCGACTACCACGACTTCAAGTTGGTTCGACAGAGCATGA CGCGAGACATGTTTCTCCTCATCTACAGCCGTTTTTTCCACATGGCGCCC GCCCCCTCACCGAAGAGACATCCAGATGGCTCCTACGACGAAGGGTGGGA TGCCTTGTGGCATATTCGGTAAGAAGCTCAGCAGCACGCGTGCAGCGGCA CGTTCGAGATGGCCGTGATTAGGTGGTGCTAGTGGTTGTGGATGACACAG GCCGTGCAGCCTGTAGGCAATCGCAATTCTTTGTTTTGTCATTGTTTCCG GTGACGCTGATAAAAAGAAAATgGGGGGTCACAGTTGTCGGAGGTTATTC GTCGTCTAATGATCGTTTATTTCGCCACACCTCCCGCTGTAGTGTCCATC CCAAGTTATGCAATAGCGTTTTTTCAGACGGAATGACGCAGTATTCCCCC CGTTGAAAGCGAAATCAAAGCGTATCAACGGCTTCACAACAGCGGGTGTC ACTTACTTGTTCCGCCTCTACTTCCGTTGTAATTCATGGTCCGTACGAGG AGCACGAGGTAATGGCCGATGGGGTTCAGCACTGGTGTCCACAAATGAAA TTCGTGAGGGGCATTGGCAAAAAGTATTTATCCCGCTTGGTCCAACACAC GTTTGATTATTTTCGGCAATATGTGTTTGCTTCGTACATATCAGCTGCAA TATCCGTGTTAACCCCTTTTGGCGACCGCACCCCGCCGGGCTACGTATGT CGCAGCGCGTTTGAAACGATGCTGAACGAGACGTGGAGCGGGGCGTGTCT TGTGGGGCAGTGGATATCTTTCGACGAGCAGATGGTGTTGTGCGTGGGCC GGACCGCGAAGTTCATGCTGCGGTATATGCCAAAAAAGCCCATCAAGAAC GGTGGGTGATTATCTTTCGGGTCGTGTTTTAGGTTTCATTTGTTTTTTGT GGGAATTCTGACTATATTTGTGGTACGAACCGCTACTTTTCCACCCTTTT GCGTGCGAACGAGACGAAAGTGCCACGGAATGTCGAATCTTCGGCTGGCA TGCCTGACAAGAGCGACGTTTGAAGATGTATGCAAGCGTGCACCGTACTG CGAAGTTCATGTCGCGGTACAAGTAAAAACAAAACATGATGGACCGTGGG TGGTTCATTTTGGATGGTGTCTTTCTTGTGATGTGTTTGGGGTTCCTGTG ATGTTGGTTGAATTCGGGATAAGAGTCGTAATTTTCCCTCTGTCTTCGCG TGCGAGCGCCGCAAGAGTGTTGCAGACTGTGGAACGTGCGGCTGGCATGC GTCGGAAGGGTGACATATGATCCGGAATCTATATGCGTTCGTAAAGAGAG GCAATGCCCACCATGTGACGCGCTCGCTTGCATGCCCGCGCTTTTTTTCA GGGCTGAAACTGTGGGCAGTGGCATGTTTCTCTGGCTACTGCTTTGCGAG CTACACCGACGGCGGTTTCGTCGGAGATCCGAAGCTTCGGAAGTGGGCAG GTTGCCCGCTCGGCCGGACTTGCCGGATGGTCTTGTTCGTATTGTTCGGG GCTTGCCCCAACCTCGCGGAGCAGCTCCTGCAATCTGGTACCTACGTGGC CATGGACAAC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig739:110194..112453+

>mRNA_P-littoralis_Contig739.21.2 ID=mRNA_P-littoralis_Contig739.21.2|Name=mRNA_P-littoralis_Contig739.21.2|organism=Pylaiella littoralis U1_48|type=CDS|length=957bp|location=Sequence derived from alignment at P-littoralis_Contig739:110194..112453+ (Pylaiella littoralis U1_48)
GGCAGGAGGGATCGCGGCACCGGGAAGACGTTTGCGGACTTTTTGCACAA
GAAGGAAACTGACGGGTGCCCGAAGTCGTTTCGGCCGTCGAAGTCGACCC
TCGATTCGGATGAGTATCCAAGTTTCGACCCGTCGAAACTGGGGCGTTTC
AAGAGTGCGCAACTGGGACAGCTGGCATTCACCTTTTTCAACTTCATGTT
CCCCATGGCGGTCGTCGCTCTACTTGTCAAGGAGACGAACGACTACTTCA
CCTTCTGCACCACAACACCAACTCGCAATGAGGATGACAAGCGTGAAGAT
CGACACAAGGCGAAGGAACCCACGAATGGGCGCGCGTCGTGGCCCGAGGG
TGGCATCACCGCGAACATGATGTACACCGTCATCGGCATCGTCTTGACGC
TGGGACTTGTGAGGCTTCCGGAAATCGCAAATCACTGGGACGTGAGCGAC
TACCACGACTTCAAGTTGGTTCGACAGAGCATGACGCGAGACATGTTTCT
CCTCATCTACAGCCGTTTTTTCCACATGGCGCCCGCCCCCTCACCGAAGA
GACATCCAGATGGCTCCTACGACGAAGGGTGGGATGCCTTGTGGCATATT
CGCGCGTTTGAAACGATGCTGAACGAGACGTGGAGCGGGGCGTGTCTTGT
GGGGCAGTGGATATCTTTCGACGAGCAGATGGTGTTGTGCGTGGGCCGGA
CCGCGAAGTTCATGCTGCGGTATATGCCAAAAAAGCCCATCAAGAACGGG
CTGAAACTGTGGGCAGTGGCATGTTTCTCTGGCTACTGCTTTGCGAGCTA
CACCGACGGCGGTTTCGTCGGAGATCCGAAGCTTCGGAAGTGGGCAGGTT
GCCCGCTCGGCCGGACTTGCCGGATGGTCTTGTTCGTATTGTTCGGGGCT
TGCCCCAACCTCGCGGAGCAGCTCCTGCAATCTGGTACCTACGTGGCCAT
GGACAAC
back to top