mRNA_P-littoralis_Contig739.21.2 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig739.21.2 vs. uniprot
Match: A0A6H5JW40_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW40_9PHAE) HSP 1 Score: 216 bits (549), Expect = 1.740e-59 Identity = 109/261 (41.76%), Postives = 149/261 (57.09%), Query Frame = 1
Query: 181 TFFNFMFPMAVVALLVKETNDYFTFCTTTPTRNEDDKREDRHKAKEPTNGRASWPEGGITANMMYTVIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRHP--DGSYDEGWDALWHIRAFETMLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWAGCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDN 957
T F+ MFP + L V +TN Y CTT D R+ K T G + PE +Y ++GI +T+GL + + HW S + D+ LVR+ M+RD+F L+Y RF H + +P R D + + +D+ WHIR E +LN W+ QW+ +DEQMV V A +++R+ PKKPI +G+KL+A+ GYCF S DGG GDPKLR W CPLGRT R VL VL GAC +++ SG Y+AMDN
Sbjct: 638 TCFDMMFPDEAIDLFVDKTNKYVNLCTTPSLPGAKDTRKAHQVEKTRTLGMVTLPEPAFERKHIYGMLGITITMGLTKKTRMRKHWSRSLHDDYPLVRECMSRDLFELLYCRFIHCSDGNAPPRWAGEDKTPNPEFDSKWHIRELEDILNNAWTENMDFNQWLCYDEQMVKTVSTFAHYLMRHSPKKPITHGMKLFAICDIEGYCFVSSVDGGMNGDPKLRVWFDCPLGRTTRHVLHVLLGACKKFGDKIDGSGAYIAMDN 898
BLAST of mRNA_P-littoralis_Contig739.21.2 vs. uniprot
Match: A0A6H5L3T1_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3T1_9PHAE) HSP 1 Score: 199 bits (506), Expect = 3.050e-55 Identity = 101/197 (51.27%), Postives = 137/197 (69.54%), Query Frame = 1
Query: 13 RGTGKTFADFLHKKETDGCPKSFRPSKSTLDSDEYPSFDPSKLGRFKSAQLGQLAFTFFNFMFPMAVVALLVKETNDYFTFCTTTPTRNEDDKREDRHKAKEPTNGRASWPEGGITANMMYTVIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRHPDGSYDEGWDALWHIR 603
RG G + D K+E +G SF+PSK TLD+ P+FDP KLGRF +LG+LAFTFF+ MFP AV+ LLV++TN+YF FC +T +E RH+ ++ G++SWP+ GIT +MM VI I+LT+GLV+LP + +HW +HD+KLVR + RDMFLLIY RFFHMA + +P+R G+ + GWD+L HIR
Sbjct: 441 RGDGHQYYDCHRKREGEGEDVSFKPSKKTLDA--LPAFDPDKLGRFSVDELGELAFTFFSIMFPAAVILLLVRKTNEYFNFCRSTKNPKG---QEQRHRDQKARKGKSSWPKKGITKSMMQGVISIILTIGLVQLPAMHDHWSCHSFHDYKLVRACLPRDMFLLIYGRFFHMASSGAPERLQGGTTEPGWDSLHHIR 632
BLAST of mRNA_P-littoralis_Contig739.21.2 vs. uniprot
Match: A0A6H5JFU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFU5_9PHAE) HSP 1 Score: 196 bits (498), Expect = 4.080e-53 Identity = 100/197 (50.76%), Postives = 134/197 (68.02%), Query Frame = 1
Query: 13 RGTGKTFADFLHKKETDGCPKSFRPSKSTLDSDEYPSFDPSKLGRFKSAQLGQLAFTFFNFMFPMAVVALLVKETNDYFTFCTTTPTRNEDDKREDRHKAKEPTNGRASWPEGGITANMMYTVIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRHPDGSYDEGWDALWHIR 603
RG G + D K+E +G SF+PSK T+ + P+FDP KLGRF +LG+LAFTFF+ MFP AV+ LLV++T +YF FC +T E +E RH+ K+ G++SWP+ GIT MM VIGI+L +GLV+LP + +HW +HD+KLVR + RDM LLIY RFFHMA + +PKR DG+ + GW +L HIR
Sbjct: 647 RGDGHQYYDCHRKREGEGEDVSFKPSKKTIGA--LPAFDPDKLGRFSVDELGELAFTFFSIMFPAAVILLLVRKTYEYFNFCRSTKNPKE---QEQRHRDKKARKGKSSWPKKGITKRMMQGVIGIILAIGLVQLPAVHDHWSCHSFHDYKLVRACLPRDMSLLIYGRFFHMASSGAPKRLQDGTTEPGWGSLHHIR 838
BLAST of mRNA_P-littoralis_Contig739.21.2 vs. uniprot
Match: A0A6H5KMJ3_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMJ3_9PHAE) HSP 1 Score: 170 bits (430), Expect = 1.950e-47 Identity = 82/194 (42.27%), Postives = 117/194 (60.31%), Query Frame = 1
Query: 379 VIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRH-PDGSYDEGWDALWHIRAFETMLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWAGCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDN 957
+IGI +T+GL + + HW S + ++ LV++ M RD+F L+Y RF H + +P+R PDG + +D+ WHIR E +LN W+ W+S+DEQM+ V + + + Y P KPIK+G+KL A + Y S DGG GDPKLR + CPLGRT R VL VL G C L +++ SG ++AMDN
Sbjct: 33 MIGIFITMGLTKKVRMRKHWSRSAHDNYPLVQKCMPRDVFELLYCRFLHCSDPNAPERLLPDGEENPDYDSKWHIRELEEILNTAWAANVECDNWLSYDEQMIKTVSKYSSKVSFYCPAKPIKHGMKLLAACDITSYSLTSSVDGGMKGDPKLRPYMDCPLGRTTRHVLHVLLGECGVLRQKIDGSGLFIAMDN 226
BLAST of mRNA_P-littoralis_Contig739.21.2 vs. uniprot
Match: A0A6H5KPD8_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPD8_9PHAE) HSP 1 Score: 168 bits (425), Expect = 2.470e-46 Identity = 84/204 (41.18%), Postives = 111/204 (54.41%), Query Frame = 1
Query: 346 EGGITANMMYTVIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRHPDGSYDEGWDALWHIRAFETMLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWAGCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDN 957
E G +Y+V G +H V + ++ +VR M RD+F+L Y RFFH+APA D YD HIR E +LN+ WS G W+S+DEQMV R ++RY KPIK+G+K WA+ C SGY F DGGF GD KLR +A CPLGR+ R V++VL AC + +++ G VAMDN
Sbjct: 26 EYGFERKHLYSVTGXXXXXXXXXXXXXXDHCGVEAHDNYPMVRACMPRDLFVLFYGRFFHLAPATGKLNKDDPKYD----CKHHIRKLEDVLNKCWSELVEPGAWLSYDEQMVKSTARVMLALMRYNKAKPIKHGIKCWAICCPSGYSFVQSIDGGFSGDIKLRPYASCPLGRSARTVMYVLLEACETFSNKIIGKGITVAMDN 225
BLAST of mRNA_P-littoralis_Contig739.21.2 vs. uniprot
Match: A0A6H5JJP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP9_9PHAE) HSP 1 Score: 168 bits (425), Expect = 6.150e-43 Identity = 79/177 (44.63%), Postives = 110/177 (62.15%), Query Frame = 1
Query: 433 HWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRHP--DGSYDEGWDALWHIRAFETMLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWAGCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDN 957
HW S + D+ LVR+ M+RD+F L+YSRF H + +P R D + + +D+ WHIR E +LN W+ +W+ +DEQM+ V A +++R PK+PI +G+KL+A+ GYCF S DGG GDPKLR W CPLGRT R VL VL GAC +++ SG ++AM N
Sbjct: 668 HWSRSLHDDYPLVRKCMSRDLFELLYSRFIHCSDGNAPPRWTGEDKTPNPEFDSKWHIRELEDILNNAWTENMDFNEWLCYDEQMMRTVSTFAHYLMRDNPKEPITHGMKLFAICDIEGYCFVSSVDGGMNGDPKLRVWFDCPLGRTTRHVLHVLLGACKKFGDKIDGSGVHIAMSN 844
BLAST of mRNA_P-littoralis_Contig739.21.2 vs. uniprot
Match: A0A6H5KCC7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCC7_9PHAE) HSP 1 Score: 154 bits (390), Expect = 8.390e-40 Identity = 78/194 (40.21%), Postives = 112/194 (57.73%), Query Frame = 1
Query: 379 VIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRH-PDGSYDEGWDALWHIRAFETMLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWAGCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDN 957
+IGI +T+GL + + HW S + ++ LV++ M+RD+F L+Y RF H + +P+R PDG + +D+ HIR E +LN W+ G W+S+DEQM+ V + + G+KL A +GYC S DGG GDPKLR + CPLGRT R VL VL G C L +++ SG ++AMDN
Sbjct: 33 MIGIFITMGLTKKVRMRKHWSRSAHDNYPLVQKCMSRDVFELLYCRFLHCSDPNAPERLLPDGEENPDYDSKRHIRELEEILNTAWATNVECGNWLSYDEQMIKTVSK-------------YEQGMKLLAACDITGYCLTSSVDGGMKGDPKLRPYMDCPLGRTTRHVLHVLLGECGVLRQKIDGSGVFIAMDN 213
BLAST of mRNA_P-littoralis_Contig739.21.2 vs. uniprot
Match: A0A6H5KQZ5_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ5_9PHAE) HSP 1 Score: 154 bits (389), Expect = 2.030e-39 Identity = 73/158 (46.20%), Postives = 94/158 (59.49%), Query Frame = 1
Query: 484 TRDMFLLIYSRFFHMAPAPSPKRHPDGSYDEGWDALWHIRAFETMLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWAGCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDN 957
T ++F+L Y RFF++APA D YD HIR E + N+ WS G W+S+DEQMV R ++RY KPIKNG+K WA+ C SGYCF DGGF GD KLR +A CPLGR+ R V++VL AC + +++ G VAMDN
Sbjct: 6 TTNLFVLFYGRFFNLAPATGKLNKDDPQYD----CKHHIRKLEDVFNKCWSELVEPGAWLSYDEQMVKSTARVMFALMRYNKAKPIKNGIKCWAICCPSGYCFVQSIDGGFSGDIKLRPYASCPLGRSARTVMYVLLEACETFSNKIIGKGITVAMDN 159
BLAST of mRNA_P-littoralis_Contig739.21.2 vs. uniprot
Match: A0A6H5KG44_9PHAE (DDE_Tnp_1_7 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG44_9PHAE) HSP 1 Score: 130 bits (327), Expect = 1.750e-32 Identity = 61/119 (51.26%), Postives = 76/119 (63.87%), Query Frame = 1
Query: 601 RAFETMLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWAGCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDN 957
R E +LNE WS G W+S+DEQMV R ++R+ KPIK G+K WA+ C SGYCF DGGF GD KLR A CPLGR+ R VL+VL ACP +++++ SG VAMDN
Sbjct: 3 RELEDLLNECWSKLVEPGAWLSYDEQMVKSTARAMFALMRFNKTKPIKTGIKGWAICCPSGYCFVQSIDGGFSGDIKLRPHATCPLGRSARTVLYVLLEACPTFSDKIVGSGITVAMDN 121
BLAST of mRNA_P-littoralis_Contig739.21.2 vs. uniprot
Match: A0A6H5KJJ0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJJ0_9PHAE) HSP 1 Score: 131 bits (329), Expect = 9.530e-31 Identity = 72/196 (36.73%), Postives = 107/196 (54.59%), Query Frame = 1
Query: 379 VIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRHPDGSYDEGWDALWHIRA---FETMLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWAGCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDN 957
+IGI +T+GL + + +W S + ++ LV++ M+ + L + R + R + S L+H+RA E +LN W+ W+S+DEQM+ V + + + Y P KPIK+G+KL A +GYC S DGG GDPKLR + CPLGR R VL VL G C L +++ SG ++AMDN
Sbjct: 33 MIGIFITIGLTKKVRMQKNWSRSAHDNYPLVQKCMSVLLQLGWWGRDRRGSKGTGAPRKVEDS-PPSTAPLFHVRAVWELEEILNTAWAANVECDNWLSYDEQMIKTVSKYSSKVSFYCPAKPIKHGMKLLAACDITGYCLTSSVDGGMKGDPKLRPYMDCPLGRATRHVLHVLLGECGVLRQKIDGSGVFIAMDN 227 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig739.21.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig739.21.2 >prot_P-littoralis_Contig739.21.2 ID=prot_P-littoralis_Contig739.21.2|Name=mRNA_P-littoralis_Contig739.21.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=319bp GRRDRGTGKTFADFLHKKETDGCPKSFRPSKSTLDSDEYPSFDPSKLGRFback to top mRNA from alignment at P-littoralis_Contig739:110194..112453+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig739.21.2 ID=mRNA_P-littoralis_Contig739.21.2|Name=mRNA_P-littoralis_Contig739.21.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=2260bp|location=Sequence derived from alignment at P-littoralis_Contig739:110194..112453+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig739:110194..112453+ >mRNA_P-littoralis_Contig739.21.2 ID=mRNA_P-littoralis_Contig739.21.2|Name=mRNA_P-littoralis_Contig739.21.2|organism=Pylaiella littoralis U1_48|type=CDS|length=957bp|location=Sequence derived from alignment at P-littoralis_Contig739:110194..112453+ (Pylaiella littoralis U1_48)back to top |