mRNA_P-littoralis_Contig1185.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig1185.7.1
Unique Name	mRNA_P-littoralis_Contig1185.7.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

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BLAST of mRNA_P-littoralis_Contig1185.7.1 vs. uniprot
Match: D7G2I2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I2_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 1.680e-34
Identity = 59/89 (66.29%), Postives = 72/89 (80.90%), Query Frame = 2

Query:    2 AIYMHGMIGTSAYNLVSNLLHLPSIARVKQLRRQARPPQTGVLRDNIKKYGNLAAHHDADKADLTGILTWDLMHLNKHGFNYSPNAGGI 268
            AIY+ G+ GT+AYN++ N+LHLPS  R+KQLRR A PP+TGVL +NI KYG LAA  DADK DL G+LTWDLMHLNK GF+++PN GG 
Sbjct:  428 AIYIQGIAGTAAYNMLMNVLHLPSPERIKQLRRNAAPPRTGVLTENILKYGKLAATQDADKVDLMGVLTWDLMHLNKSGFSFTPNGGGF 516

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BLAST of mRNA_P-littoralis_Contig1185.7.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 2.280e-34
Identity = 59/89 (66.29%), Postives = 73/89 (82.02%), Query Frame = 2

Query:    2 AIYMHGMIGTSAYNLVSNLLHLPSIARVKQLRRQARPPQTGVLRDNIKKYGNLAAHHDADKADLTGILTWDLMHLNKHGFNYSPNAGGI 268
            AIY+ G+ GT+AYN++ N+LHLPS  R+KQLRR A PP+TGVL +NI KYG LAA  DADK DL G+LTWDLMHLNK+GF+++PN GG 
Sbjct:  470 AIYIQGIAGTAAYNMLRNVLHLPSPERIKQLRRNAAPPRTGVLTENILKYGKLAATQDADKVDLMGVLTWDLMHLNKNGFSFAPNGGGF 558

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BLAST of mRNA_P-littoralis_Contig1185.7.1 vs. uniprot
Match: D7G5R1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R1_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 2.690e-33
Identity = 54/89 (60.67%), Postives = 72/89 (80.90%), Query Frame = 2

Query:    2 AIYMHGMIGTSAYNLVSNLLHLPSIARVKQLRRQARPPQTGVLRDNIKKYGNLAAHHDADKADLTGILTWDLMHLNKHGFNYSPNAGGI 268
            AIYMHG+ G++ YN++ N +HLPS  RV+QL+ QA PP+TGVL DNI+KYG LAA  DADKADLTG+L+WDL HL+K+G +++P  G +
Sbjct:   88 AIYMHGVAGSAGYNMLRNFIHLPSPRRVQQLQAQAAPPRTGVLVDNIRKYGRLAAEQDADKADLTGVLSWDLTHLSKNGLDFAPKEGRL 176

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BLAST of mRNA_P-littoralis_Contig1185.7.1 vs. uniprot
Match: A0A6H5KVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF4_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 3.730e-33
Identity = 58/89 (65.17%), Postives = 72/89 (80.90%), Query Frame = 2

Query:    2 AIYMHGMIGTSAYNLVSNLLHLPSIARVKQLRRQARPPQTGVLRDNIKKYGNLAAHHDADKADLTGILTWDLMHLNKHGFNYSPNAGGI 268
            AIY+ G+ GT+AYN++ N+LHLPS  R+KQLRR A PP+T VL +NI KYG LAA  DADK DL G+LTWDLMHLNK+GF+++PN GG 
Sbjct:  561 AIYIQGIAGTAAYNMLRNVLHLPSPERIKQLRRNAAPPRTCVLTENILKYGKLAATQDADKVDLMGVLTWDLMHLNKNGFSFAPNGGGF 649

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BLAST of mRNA_P-littoralis_Contig1185.7.1 vs. uniprot
Match: D7FVM8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM8_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 8.840e-33
Identity = 53/87 (60.92%), Postives = 70/87 (80.46%), Query Frame = 2

Query:    8 YMHGMIGTSAYNLVSNLLHLPSIARVKQLRRQARPPQTGVLRDNIKKYGNLAAHHDADKADLTGILTWDLMHLNKHGFNYSPNAGGI 268
            YMHG+ G++ YN++ N +HLPS  RV++L  QA PP+TGVL DNI+KYG LAA  DADKADLTG+L+WDL HL+K+GF+++P  GG 
Sbjct:  149 YMHGVAGSAGYNMLRNFIHLPSPRRVQRLEAQAAPPRTGVLVDNIRKYGRLAAEQDADKADLTGVLSWDLTHLSKNGFDFAPKEGGF 235

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BLAST of mRNA_P-littoralis_Contig1185.7.1 vs. uniprot
Match: A0A6H5L5M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M0_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 8.930e-33
Identity = 57/89 (64.04%), Postives = 72/89 (80.90%), Query Frame = 2

Query:    2 AIYMHGMIGTSAYNLVSNLLHLPSIARVKQLRRQARPPQTGVLRDNIKKYGNLAAHHDADKADLTGILTWDLMHLNKHGFNYSPNAGGI 268
            AIY+ G+ GT+AYN+++N+LHLPS  R+KQLRR A PP+TGVL +NI K G LAA  D DKADL G+L WDLMHLNK+GF+++PN GG 
Sbjct:  328 AIYIQGIAGTAAYNMLTNVLHLPSPERIKQLRRNAAPPRTGVLTENILKNGKLAATQDTDKADLMGVLAWDLMHLNKNGFSFAPNGGGF 416

[Close]

BLAST of mRNA_P-littoralis_Contig1185.7.1 vs. uniprot
Match: A0A6H5KQL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQL9_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 6.660e-19
Identity = 40/90 (44.44%), Postives = 58/90 (64.44%), Query Frame = 2

Query:    2 AIYMHGMIGTSAYNLVSNLLHLPSIARVKQLRRQARPPQT-GVLRDNIKKYGNLAAHHDADKADLTGILTWDLMHLNKHGFNYSPNAGGI 268
            A+Y    +G++ YN++ ++LHLPSI  ++++RR A    T GV    ++ YG +AA  +  + DL GIL WDLMHLN +GF   PN GGI
Sbjct:   24 ALYALANMGSAGYNVIQDVLHLPSIGHLRKVRRAAAGTTTWGVQHHLVEAYGKMAAEDNLGRFDLCGILVWDLMHLNTNGFKVRPNGGGI 113

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig1185.7.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig1185.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7


Match Name	E-value	Identity	Description
D7G2I2_ECTSI	1.680e-34	66.29	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7FZI2_ECTSI	2.280e-34	66.29	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7G5R1_ECTSI	2.690e-33	60.67	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KVF4_9PHAE	3.730e-33	65.17	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FVM8_ECTSI	8.840e-33	60.92	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5L5M0_9PHAE	8.930e-33	64.04	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KQL9_9PHAE	6.660e-19	44.44	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig1185	contig	P-littoralis_Contig1185:10751..11514 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Model size	270
Hectar predicted targeting category	other localisation
Exons	2
Cds size	258

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789497.7965088-UTR-P-littoralis_Contig1185:10750..10760	1680789497.7965088-UTR-P-littoralis_Contig1185:10750..10760	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig1185 10751..10760 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789497.806637-CDS-P-littoralis_Contig1185:10760..10895	1680789497.806637-CDS-P-littoralis_Contig1185:10760..10895	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig1185 10761..10895 +
1680789497.815028-CDS-P-littoralis_Contig1185:11391..11514	1680789497.815028-CDS-P-littoralis_Contig1185:11391..11514	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig1185 11392..11514 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig1185.7.1	prot_P-littoralis_Contig1185.7.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig1185 10761..11514 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig1185:10751..11514+
coding sequence from alignment at P-littoralis_Contig1185:10751..11514+

protein sequence of mRNA_P-littoralis_Contig1185.7.1

>prot_P-littoralis_Contig1185.7.1 ID=prot_P-littoralis_Contig1185.7.1|Name=mRNA_P-littoralis_Contig1185.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=86bp
MHGMIGTSAYNLVSNLLHLPSIARVKQLRRQARPPQTGVLRDNIKKYGNL
AAHHDADKADLTGILTWDLMHLNKHGFNYSPNAGGI

mRNA from alignment at P-littoralis_Contig1185:10751..11514+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig1185.7.1 ID=mRNA_P-littoralis_Contig1185.7.1|Name=mRNA_P-littoralis_Contig1185.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=764bp|location=Sequence derived from alignment at P-littoralis_Contig1185:10751..11514+ (Pylaiella littoralis U1_48)
CGCCATCTACATGCACGGGATGATTGGGACGTCGGCGTACAACCTTGTGA
GCAATTTGCTACACCTACCCTCCATCGCACGCGTGAAGCAGCTTCGACGG
CAGGCGAGGCCGCCACAAACGGGAGTGTTGCGGGATAACATCAAGGTACA
AGTGTTGCAGCACAGCCAGAGTTGCAGCTTGTTGGATCGGGTTCCGCCCG
TTCTGTTCTCGATATGCGACGGAGTGGTTTTCTCTGTTGCCAGATTTACG
GATTACTTTCAGCGCTGCTGCGAACCATATGGTGCCCTGTGGGCTCGTTG
ATGTCGACATGACATCCTGAAAAGTTTTTTTTACCCCTCTACACGCGAAG
GGTTGTACAAAAGTATGAATCATACTATTGGGTCGACTTGCCGTGCAGGA
GGTGTGGGCGCACAAAGCTGAAATCTTGTTTATCGAAAGTCAAGACATGC
AGGTTCTCGTTTGGCAATCCGTTAGGCTAGATCGAGTATGTTTGCGCGCG
CGTAGCTGGTACTTCACCCGCCACTTCGCAACGTTGATTCCCGCCGCTGG
CTTGGCTTTGTTGGGGCGGTTCGTTTCTCACACTCTTTCGACGTCCCGAT
CCCCCCGGCCCATTTCTGTTTTGCTGTCTATCCCATTGTAGAAGTACGGG
AACTTGGCCGCACACCACGACGCCGACAAGGCCGATTTGACCGGCATCCT
GACCTGGGACTTGATGCACCTGAACAAGCACGGCTTCAACTATTCCCCCA
ACGCCGGTGGCATT

Coding sequence (CDS) from alignment at P-littoralis_Contig1185:10751..11514+

>mRNA_P-littoralis_Contig1185.7.1 ID=mRNA_P-littoralis_Contig1185.7.1|Name=mRNA_P-littoralis_Contig1185.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=258bp|location=Sequence derived from alignment at P-littoralis_Contig1185:10751..11514+ (Pylaiella littoralis U1_48)
ATGCACGGGATGATTGGGACGTCGGCGTACAACCTTGTGAGCAATTTGCT
ACACCTACCCTCCATCGCACGCGTGAAGCAGCTTCGACGGCAGGCGAGGC
CGCCACAAACGGGAGTGTTGCGGGATAACATCAAGAAGTACGGGAACTTG
GCCGCACACCACGACGCCGACAAGGCCGATTTGACCGGCATCCTGACCTG
GGACTTGATGCACCTGAACAAGCACGGCTTCAACTATTCCCCCAACGCCG
GTGGCATT