mRNA_P-littoralis_Contig739.35.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig739.35.1
Unique NamemRNA_P-littoralis_Contig739.35.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig739.35.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig739contigP-littoralis_Contig739:134597..134808 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size168
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size165
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791525.4860175-CDS-P-littoralis_Contig739:134596..1346841680791525.4860175-CDS-P-littoralis_Contig739:134596..134684Pylaiella littoralis U1_48CDSP-littoralis_Contig739 134597..134684 +
1680791525.4959447-CDS-P-littoralis_Contig739:134729..1348061680791525.4959447-CDS-P-littoralis_Contig739:134729..134806Pylaiella littoralis U1_48CDSP-littoralis_Contig739 134730..134806 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig739.35.1prot_P-littoralis_Contig739.35.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig739 134597..134806 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig739.35.1

>prot_P-littoralis_Contig739.35.1 ID=prot_P-littoralis_Contig739.35.1|Name=mRNA_P-littoralis_Contig739.35.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=55bp
RFPCTTNVPLAIPAIAHDAPPPEPDSPNSGVVNNSGVGVRVPSASAFPAA
GVVNN
back to top

mRNA from alignment at P-littoralis_Contig739:134597..134808+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig739.35.1 ID=mRNA_P-littoralis_Contig739.35.1|Name=mRNA_P-littoralis_Contig739.35.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=212bp|location=Sequence derived from alignment at P-littoralis_Contig739:134597..134808+ (Pylaiella littoralis U1_48)
CGCTTTCCTTGCACGACCAACGTTCCCCTTGCGATTCCTGCAATCGCTCA
TGATGCCCCTCCCCCAGAACCTGATTCTCCCAATTCAGGTGTTGGCGTTC
GTGTCCCTTCCGCCTCTGCACTTCCCGCAGCAGGTGTTGTGAACAATTCA
GGTGTTGGCGTTCGTGTCCCTTCCGCCTCTGCATTTCCCGCAGCAGGTGT
TGTGAACAATTC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig739:134597..134808+

>mRNA_P-littoralis_Contig739.35.1 ID=mRNA_P-littoralis_Contig739.35.1|Name=mRNA_P-littoralis_Contig739.35.1|organism=Pylaiella littoralis U1_48|type=CDS|length=165bp|location=Sequence derived from alignment at P-littoralis_Contig739:134597..134808+ (Pylaiella littoralis U1_48)
CGCTTTCCTTGCACGACCAACGTTCCCCTTGCGATTCCTGCAATCGCTCA
TGATGCCCCTCCCCCAGAACCTGATTCTCCCAATTCAGGTGTTGTGAACA
ATTCAGGTGTTGGCGTTCGTGTCCCTTCCGCCTCTGCATTTCCCGCAGCA
GGTGTTGTGAACAAT
back to top