mRNA_P-littoralis_Contig1185.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1185.6.1
Unique NamemRNA_P-littoralis_Contig1185.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1185.6.1 vs. uniprot
Match: A0A6H5KCN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN5_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 3.180e-33
Identity = 63/110 (57.27%), Postives = 73/110 (66.36%), Query Frame = 2 
Query:    2 RMAQRTLENSPDALVGDDR--WASANVRGFLKSPNGCVSGVLGLRGHDDVLWSRRCRGVATNVDGSLGVARCSECKDFYRRSVTRRTIQAAKHTPDRSTRIGDMSTGQKE 325
            R A R LE  P  L   DR  W  A+VRG L  PNG VSGV+GL G +DVLWSR+C G AT   G  GV RC+ CKDFYRR +T RT  AAKHTP + TR+ +MST QK+
Sbjct:   31 RQALRILEKVPAILQPHDRDRWQHADVRGVLAGPNGHVSGVMGLVGREDVLWSRKCTGFATPSYGRTGVPRCTHCKDFYRRGMTPRTAHAAKHTPAKKTRVSEMSTAQKD 140
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BLAST of mRNA_P-littoralis_Contig1185.6.1 vs. uniprot
Match: D7FVM8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM8_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 4.650e-11
Identity = 40/94 (42.55%), Postives = 53/94 (56.38%), Query Frame = 2 
Query:   47 GDD-RWASANVRGFLKSPNGCVSGVLGLRGHDDVLWSRRCRGVATNVDGSLGVARCSECKDFYRRSVTRRTIQAAKHTPDRSTRIGDMSTGQKE 325
            GD+ RW    V G L    G VSG+L       VLWS+ C  +A+N   S GVARC ECK+F+R+SV +   Q  K  P  +T+   +ST QK+
Sbjct:    4 GDEGRWERGAVAGCLAGTKG-VSGILVRVADKAVLWSKACGWLASNHGESGGVARCGECKEFFRKSVQKLLAQTVKSDPHSNTKTESLSTVQKK 96
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1185.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KCN5_9PHAE3.180e-3357.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVM8_ECTSI4.650e-1142.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1185contigP-littoralis_Contig1185:9876..10589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size536
Hectar predicted targeting categoryother localisation
Exons2
Cds size531
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789497.736007-UTR-P-littoralis_Contig1185:9875..98791680789497.736007-UTR-P-littoralis_Contig1185:9875..9879Pylaiella littoralis U1_48UTRP-littoralis_Contig1185 9876..9879 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789497.7511537-CDS-P-littoralis_Contig1185:9879..101971680789497.7511537-CDS-P-littoralis_Contig1185:9879..10197Pylaiella littoralis U1_48CDSP-littoralis_Contig1185 9880..10197 +
1680789497.7624834-CDS-P-littoralis_Contig1185:10376..105891680789497.7624834-CDS-P-littoralis_Contig1185:10376..10589Pylaiella littoralis U1_48CDSP-littoralis_Contig1185 10377..10589 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1185.6.1prot_P-littoralis_Contig1185.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1185 9880..10589 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1185.6.1

>prot_P-littoralis_Contig1185.6.1 ID=prot_P-littoralis_Contig1185.6.1|Name=mRNA_P-littoralis_Contig1185.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=177bp
MAQRTLENSPDALVGDDRWASANVRGFLKSPNGCVSGVLGLRGHDDVLWS
RRCRGVATNVDGSLGVARCSECKDFYRRSVTRRTIQAAKHTPDRSTRIGD
MSTGQKERTIHLINRDRKKKAAEIARLREELHVARKDFVKFNKKQGEALH
ELFMDPKSKEVLCTKLPKDSAERAIYE
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mRNA from alignment at P-littoralis_Contig1185:9876..10589+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1185.6.1 ID=mRNA_P-littoralis_Contig1185.6.1|Name=mRNA_P-littoralis_Contig1185.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=714bp|location=Sequence derived from alignment at P-littoralis_Contig1185:9876..10589+ (Pylaiella littoralis U1_48)
GCGCATGGCTCAACGCACACTCGAGAACAGTCCGGACGCTCTCGTTGGCG
ACGACCGCTGGGCCTCTGCGAACGTAAGGGGATTTCTCAAAAGCCCCAAC
GGCTGTGTTTCGGGCGTACTGGGCCTGCGGGGTCACGACGATGTGCTGTG
GTCAAGGCGCTGTCGTGGTGTCGCTACGAACGTGGATGGTAGCTTAGGGG
TGGCGCGATGTAGTGAGTGCAAGGATTTCTACCGCCGTTCGGTGACCAGG
CGAACGATCCAAGCTGCGAAGCACACTCCGGACAGATCCACCAGGATCGG
AGACATGAGCACTGGCCAAAAGGTGAGAAAACCAACTTAATGCAAGCATG
CCGAAGTTTACTGGGATAGGTCCTCTCTGAATGCTCTCTTCATCTATATG
GCGCATTCCGTCCTGTAATGCAGTATATACTTGCGGGATTTTGTGGTGCA
TTTGTTGAAGTGTATCCGCACGTCCGCCATGCGTCCCACAAACTTCCTCA
GGAGAGGACGATCCATCTGATCAACCGGGACAGGAAGAAGAAAGCGGCGG
AGATTGCGCGACTGCGGGAGGAGCTGCACGTGGCCCGGAAGGATTTCGTC
AAGTTCAATAAAAAACAAGGCGAGGCTCTCCACGAGCTCTTCATGGACCC
CAAGTCCAAGGAGGTGCTCTGCACCAAGCTCCCGAAGGATAGCGCCGAAC
GAGCGATATACGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1185:9876..10589+

>mRNA_P-littoralis_Contig1185.6.1 ID=mRNA_P-littoralis_Contig1185.6.1|Name=mRNA_P-littoralis_Contig1185.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=531bp|location=Sequence derived from alignment at P-littoralis_Contig1185:9876..10589+ (Pylaiella littoralis U1_48)
ATGGCTCAACGCACACTCGAGAACAGTCCGGACGCTCTCGTTGGCGACGA
CCGCTGGGCCTCTGCGAACGTAAGGGGATTTCTCAAAAGCCCCAACGGCT
GTGTTTCGGGCGTACTGGGCCTGCGGGGTCACGACGATGTGCTGTGGTCA
AGGCGCTGTCGTGGTGTCGCTACGAACGTGGATGGTAGCTTAGGGGTGGC
GCGATGTAGTGAGTGCAAGGATTTCTACCGCCGTTCGGTGACCAGGCGAA
CGATCCAAGCTGCGAAGCACACTCCGGACAGATCCACCAGGATCGGAGAC
ATGAGCACTGGCCAAAAGGAGAGGACGATCCATCTGATCAACCGGGACAG
GAAGAAGAAAGCGGCGGAGATTGCGCGACTGCGGGAGGAGCTGCACGTGG
CCCGGAAGGATTTCGTCAAGTTCAATAAAAAACAAGGCGAGGCTCTCCAC
GAGCTCTTCATGGACCCCAAGTCCAAGGAGGTGCTCTGCACCAAGCTCCC
GAAGGATAGCGCCGAACGAGCGATATACGAG
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