mRNA_P-littoralis_Contig738.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig738.10.1
Unique NamemRNA_P-littoralis_Contig738.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig738.10.1 vs. uniprot
Match: D7FY36_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY36_ECTSI)

HSP 1 Score: 326 bits (836), Expect = 1.610e-101
Identity = 181/333 (54.35%), Postives = 217/333 (65.17%), Query Frame = 1 
Query:  637 IFTPS----------VENLVVSVAAKLKQEATACLPQHVLQFVLEFVSISENGALCAVSKEFREAAEADALWRGAYEKRF-LSQVQESRQDGEGDPSAAGGVCGGTXXXXXXXXXXXXXXTVAASGGEISVDGKFGRFKHRYNMRMQDPHVGDKVEVAWKGKFRLESFEVYNGTAWWVARVVDKGKRPGHYKVHYPGWEEKWDEWVPRDRLRWGNESLAVPLERRSSPVK-GDSVEVWCQGLHVPGAWLEAVVYEVEKGRLHLGEVLTSGCFWVDVKHVRLVKQNAHDVGLRGGQQEEAFEEMSVCRKRS--ILLEALSDAGFTGGGDGGCYC 1593
            +FTPS          VENLVV+VAAK KQE TA LP HVLQ                   +FREAAE D LWR AY++RF + Q + S   G+G P A GG CG                  +++G E   DG    FK RY  R+ DPHVGD+V+VAWKGKFRLES EVY+GTAWW+ARVVDKG++PG+YKVHYPGWE KWDEWV RDRLRWGNE LA PL  +  P++ GD+VEVWC+GLHVPGAWLEAVVYEVEK R++LGEVLTSG FW   +HVRL+++   D    GG+    +   S CR+RS  +LL+ L+DAGFT      CYC
Sbjct:   33 LFTPSLPPFLSLYSTVENLVVAVAAKFKQEVTASLPLHVLQ-------------------DFREAAEGDGLWREAYDERFPVLQSETSESAGQGGPDAGGGGCGPVDCREATATKPTASGRNSSTGDEKG-DG----FKGRYKRRLLDPHVGDEVQVAWKGKFRLESLEVYDGTAWWLARVVDKGEKPGYYKVHYPGWEPKWDEWVVRDRLRWGNEHLAAPL--KGIPLQAGDAVEVWCKGLHVPGAWLEAVVYEVEKERVYLGEVLTSGHFWARTEHVRLIQKGPVDDD--GGEFRLGYT--SACRRRSNSVLLQCLTDAGFTTESTC-CYC 334
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BLAST of mRNA_P-littoralis_Contig738.10.1 vs. uniprot
Match: W7T606_9STRA (F-box domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T606_9STRA)

HSP 1 Score: 196 bits (499), Expect = 1.050e-51
Identity = 120/355 (33.80%), Postives = 178/355 (50.14%), Query Frame = 1 
Query:  460 GQAWTVALCALWGCRDTHGLEASLSLMAAVALALFPSELGQAFA------------EFDSAIKKKRASSAEIFTPSVENLVVSVAAKL-KQEATACLPQHVLQFVLEFVSISENGALCAVSKEFREAAEADALWRGAYEKRF-LSQVQESRQDGEGDPSAAGGVCGGTXXXXXXXXXXXXXXTVAASGGEISVDGKFGRFKHRYNMRMQDPHVGDKVEVAWKGKFRLESFEVYNGTAWWVARVVDKGKRPGHYKVHYPGWEEKWDEWVPRDRLRWGNESLAVPLERRSSPVKGDSVEVWCQGLHVPGAWLEAVVYEVEKGRLHLGEVLTSGCFWVDVKHVRLV-KQNAHDVGLRG 1479
            G  WT A+  L+  +D    E  +  +  +   L   +LG+A              + ++A+ +K+  +  +F P V  L + V A+   ++    LP  VL +   F+SISE G   +V ++++E  ++ A+W+  Y KRF      +    G G P +                                       ++  +  R+ DPHVGD VEVAWKGKFRLES ++Y G AWW A VV+KG+    YK+HYPGW+ +WDEWV RDRLRW   ++   L +R  P   D VE+WC G +VPGAWLEA V +V+     +G VL+SG  WV+ + VR+  K  A  +G +G
Sbjct:  104 GAGWTRAIVDLYNAQDP---EQMIRCLQEIQSLLRTQKLGKAGVAKEQQQSKFCKKDLEAALNEKKKKNPNLFIPDVRRLSLEVMAEFFDKDRVNKLPSAVLIYTASFMSISELGMAASVCQQWKETVQSVAVWKPLYIKRFHFLHSPDDASTGIGLPLS---------------------------------------YQALFRARLLDPHVGDLVEVAWKGKFRLESMDIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWVARDRLRW---TVEQDLNKRIMP--NDDVEIWCCGSNVPGAWLEAKVRKVKGQTYCVGRVLSSGALWVNRERVRISPKGGARSLGKQG 411
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BLAST of mRNA_P-littoralis_Contig738.10.1 vs. uniprot
Match: A0A4D9D060_9STRA (F-box domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D060_9STRA)

HSP 1 Score: 190 bits (482), Expect = 5.870e-51
Identity = 104/281 (37.01%), Postives = 153/281 (54.45%), Query Frame = 1 
Query:  592 EFDSAIKKKRASSAEIFTPSVENLVVSVAAKL-KQEATACLPQHVLQFVLEFVSISENGALCAVSKEFREAAEADALWRGAYEKRFLSQVQESRQDGEGDPSAAGGVCGGTXXXXXXXXXXXXXXTVAASGGEISVDGKFGRFKHRYNMRMQDPHVGDKVEVAWKGKFRLESFEVYNGTAWWVARVVDKGKRPGHYKVHYPGWEEKWDEWVPRDRLRWGNESLAVPLERRSSPVKGDSVEVWCQGLHVPGAWLEAVVYEVEKGRLHLGEVLTSGCFWVDVK 1431
            + ++A+ +K+  ++ +F P V  L + V A+   ++    LP  VL +   F+SISE G   +V ++++E  ++ A+W+  Y KRF      S  D                               A++G  + V      +   +  R+ DP+VGD VEVAWKGKFRLES ++Y G AWW A VV+KG+    YK+HYPGW+ +WDEWVPRDRLRW   ++   L +R  P   D VE+WC G +VPGAWLEA V +V+     +G VL+SG  W  ++
Sbjct:   35 DLEAALNEKKKKNSILFIPDVRRLSLEVMAEFFDKDRVNKLPSAVLIYTASFMSISELGMAASVCQQWKETVQSGAVWKPLYIKRF--HFLHSPDD-------------------------------ASTGIGLPVS-----YHALFRARLLDPYVGDLVEVAWKGKFRLESMDIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWVPRDRLRW---TVEQDLNKRIMP--NDDVEIWCCGSNVPGAWLEAKVRKVKGQTYCVGRVLSSGALWKTIR 272
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BLAST of mRNA_P-littoralis_Contig738.10.1 vs. uniprot
Match: A0A835ZI68_9STRA (Tudor-knot domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI68_9STRA)

HSP 1 Score: 186 bits (471), Expect = 3.740e-50
Identity = 105/273 (38.46%), Postives = 151/273 (55.31%), Query Frame = 1 
Query:  736 LEFVSISENGALCAVSKEFREAAEADALWRGAYEKRFLSQVQESRQDGEGDPSAAGGVCGGTXXXXXXXXXXXXXXTVAASGGEISVDGKFGRFKHRYNMRMQDPHVGDKVEVAWKGKFRLESFEVYNGTAWWVARVVDKGKRPGHYKVHYPGWEEKWDEWVPRDRLRWGNESLAVPLERRSSPVK-GDSVEVWCQGLHVPGAWLEAVVYEVEKGRLHLGEVLTSGCFWVDVKHVRLVKQNAHDVGLRGGQQEEAFEEMSVCRKRSILLEALS 1551
            + F+S+ E G L  +SK +R+ +E D LWR  Y+ RF  ++ +S                                 + A+G + +V       K  +  R+  P VGD+VEVAW+GKFRLES EV++G AWW+A VV +      YKVHYPGWE +WDEWV R+RLRWGN++ A  L     PV+ GD+VEVWC G+HVPGAWLE  V  +   R +LG++L +G F + +   RLV++   ++  RG       EE    R+RS+ +  ++
Sbjct:    1 MHFLSLPELGTLARLSKSWRQLSEHDYLWREPYKARF--KISDS---------------------------------LLAAGSDAAVTPPLS-CKEAFARRLLHPQVGDRVEVAWRGKFRLESLEVFSGLAWWLADVVARSDDCRRYKVHYPGWEPRWDEWVSRERLRWGNDARAARL--LGHPVEVGDTVEVWCGGVHVPGAWLEGRVSCIRSDRAYLGDMLAAGTFSIPLARCRLVRKA--ELMARGE------EEGETVRRRSLNVACMA 227
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BLAST of mRNA_P-littoralis_Contig738.10.1 vs. uniprot
Match: A0A835ZFT0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFT0_9STRA)

HSP 1 Score: 186 bits (471), Expect = 1.340e-49
Identity = 107/299 (35.79%), Postives = 153/299 (51.17%), Query Frame = 1 
Query:  637 IFTPSVENLVVSVAAKL--KQEATACLPQHVLQFVLEFVSISENG-ALCAVSKEFREAAEADALWRGAYEKRFLSQVQESRQDGEGDPSAAGGVCGGTXXXXXXXXXXXXXXTVAASGGEISVDGKFGRFKHRYNMRMQDPHVGDKVEVAWKGKFRLESFEVYNGTAWWVARVVDKGKRPGHYKVHYPGWEEKWDEWVPRDRLRWGNESLAVPLERRSSPVKGDSVEVWCQGLHVPGAWLEAVVYEVEKGRLHLGEVLTSGCFWVDVKHVRLVKQNAHDVGLRGGQQEEAFEEMSVCRK 1524
            +F   VE  V  + + L    E  A LP  +   + +F+++ E G A+C VS+++R+  E + LWR  Y  RF  +    ++D                                    E++  G   + K  +  R+  P VGD+VEVAW+GKFRLES E+YNG AWW+A +V+       YKVHYPGWE +WDE+VPR+RLRWGN+  A  L      V GD VE+WC G +VPGAWLE  V  +   R+ LG+V+  G F V  +  RLV + A       G+ + A    ++ R+
Sbjct:    6 LFVYKVEEAVAVITSHLLRSSEPAASLPPGLFLDIAQFLTLEERGKAVCCVSRKWRQLGEHNHLWREPYLTRF--KFHSPQED----------------------------LATHTEAQELAQPGP--KVKDLFARRLVRPQVGDRVEVAWRGKFRLESLEIYNGLAWWLAEIVECDADGQRYKVHYPGWEARWDEFVPRERLRWGNDRRAAQLRDERIAV-GDMVEIWCGGTNVPGAWLEGRVSSIRGERVFLGDVVAEGFFSVTEERCRLVSKGASAPPQSEGRSDTARALCNIARQ 271
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BLAST of mRNA_P-littoralis_Contig738.10.1 vs. uniprot
Match: A0A7S4A403_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A403_9STRA)

HSP 1 Score: 177 bits (449), Expect = 1.050e-45
Identity = 105/268 (39.18%), Postives = 135/268 (50.37%), Query Frame = 1 
Query:  709 LPQHVLQFVLEFVSISENGALCAVSKEFREAAEADALWRGAYEKRFLSQVQESRQDGEGDPSAAGGVCGGTXXXXXXXXXXXXXXTVAASGGEISVDGKFGRFKHRYNMRMQDPHVGDKVEVAWKGKFRLESFEVYNGTAWWVARVVDK------GKRPGH----------YKVHYPGWEEKWDEWVPRDRLRWG--NESLAVPLERRSSPVKGDSVEVWCQGLHVPGAWLEAVVYEVEKGRLHLGEVLTSGCFWVDVKHVRLVKQNA 1458
            LP+  +   L F+ ++ +  L  VS+++   +  DALWR  Y  RF      S    EGD                               GE S D ++  +K  Y  R++DPHVGD VEVAW+GKFRLES E+Y GTAWWVA VVDK         PG           YKV +PGWE +WDEWV RDRLRW   N   A  L+ R      D VEVWC   +VPGAWLEA V ++    + +G VL++G  WVD   VR  + ++
Sbjct:   97 LPRDTMLLCLSFLDVTAHTTLSTVSRDWLSLSSEDALWRDHYLNRF------SGGSDEGD-------------------------------GETSAD-EYEDYKQEYKQRLEDPHVGDDVEVAWRGKFRLESLEIYRGTAWWVAVVVDKVALDAASGSPGRGRKIHAAKAWYKVTFPGWEGRWDEWVSRDRLRWRAKNTQEADALKPR------DFVEVWCGSQNVPGAWLEASVQKIRGDAVEVGRVLSTGSLWVDRSRVRRARSSS 320
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BLAST of mRNA_P-littoralis_Contig738.10.1 vs. uniprot
Match: A0A8J2SC81_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SC81_9STRA)

HSP 1 Score: 159 bits (401), Expect = 3.070e-39
Identity = 123/369 (33.33%), Postives = 158/369 (42.82%), Query Frame = 1 
Query:  505 DTHGLEASLSLMAAVALALFPSELGQAFAEFDSAIKKKRASSAEIFTPSVENLVVSVAAKLKQEATACLPQHVLQ-FVLEFVSISENGALCAVSKEFREAAEADALWRGAYEKRFLSQVQESRQDGEGDPSAAGGVCGGTXXXXXXXXXXXXXXTVAASGGEISVDGKFGR-FKHRYNMRMQDPHVGDKVEVAWKGKFRLESFEVYNGTAWWVARVVDK----------------GKRPGHYKVHYPGWEEKWDEWVPRDRLRWGNESLAVPLERRSSPVKGDSVEVWCQGLHVPGAWLEAVVYEVEKGRLHLGEVLTSGCFWVDVKHVRLVKQNAHDVGLRGGQQEEAFEEMSVCRKRSILLEALSDA 1557
            D   L A L  +A       P E   A A  D+  ++ R  S E    +   LV  V      +  A LP+ +L+  VL  + +    A+ AVS+  R AA +DA WR  Y +RF          G  D                                + S    FG   +  +  R+ DP  GD+VE+AW+G+FRLE  EVY G AWW A VV+K                 +R   YKVHY  W+ +WDEWV RD+LRW      VP  R      GD VEVWC G  VPGAWL AVV  VE     +G+V +SG  WV    VRL+ Q   D   R      A + +  CR    L  A + A
Sbjct:   22 DGRRLRAQLRRVARALDKADPRERTAARAGLDTIARRGRGWSRE----NRALLVSLVIHYYPPDRLAGLPRELLEDAVLANLDVKNLAAMAAVSRAARRAASSDAAWRPQYARRF----------GAAD--------------------------------DASEHFDFGASLRESFRQRLGDPAPGDRVEIAWRGRFRLEGLEVYRGLAWWAAEVVEKRDAXXXXXXAPDCPLDDRRARKYKVHYVHWDARWDEWVARDQLRW-----PVPEGRTGVVASGDDVEVWCSGSAVPGAWLRAVVTAVEGELYCVGDVASSGRLWVRRDRVRLI-QRKQDRAPR------APKRLQPCRMLFALARATTAA 332
[Close]
BLAST of mRNA_P-littoralis_Contig738.10.1 vs. uniprot
Match: D8LI95_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI95_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 4.850e-39
Identity = 92/250 (36.80%), Postives = 127/250 (50.80%), Query Frame = 1 
Query:  703 ACLPQHVLQFVLEFVSISENGALCAVSKEFREAAEADALWRGAYEKRFLSQVQESRQDGEGDPSAAGGVCGGTXXXXXXXXXXXXXXTVAASGGEISVDGKFGRFKHRYNMRMQDPHVGDKVEVAWKGKFRLESFEVYNGTAWWVARVVDKGKRPGHYKVHYPGWEEKWDEWVPRDRLRWGNESLAVPLERRSSPVKGDSVEVWCQGLHVPGAWLEAVVYEVEKGRLHLGEVLTSG--CFWVDVKHVRLV 1446
            A LP+ +L   +E +++ + G +C V+K++R AAE DA+WR  + +RF             DP    G                                + G  K  +  R++DP VGDKVEV+W+G+FRLES +V+ G +WW A VV K      YK+HYPGW+  WDEWV RDRLRW  +   +    R   V    VEVWC G HV GAWL+A V ++++ ++ L  VL S     WV    VR V
Sbjct:   27 AGLPRELLARSMELLNMVDLGQVCCVNKDWRNAAEEDAVWRFWWARRFRE-----------DPPPQRGRA------------------------------RAGHLKQLHRYRLEDPLVGDKVEVSWEGRFRLESLDVFVGRSWWEATVVQK-MDGFKYKIHYPGWDSNWDEWVVRDRLRWPVDPSYLSTTFRVREV----VEVWCTGTHVKGAWLQARVRQIKQDQVSLKNVLASSPRTVWVPRSKVRRV 230
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BLAST of mRNA_P-littoralis_Contig738.10.1 vs. uniprot
Match: A0A7S2XXB7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXB7_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 2.030e-20
Identity = 45/90 (50.00%), Postives = 59/90 (65.56%), Query Frame = 1 
Query: 1174 YKVHYPGWEEKWDEWVPRDRLRWGNESLAVPLERRSSPVKGDSVEVWCQGLHVPGAWLEAVVYEVEKGRLHLGEVLTSGCFWVDVKHVRL 1443
            YK+HYPGW+ +WDEWVPR+RLRW       P+E        D VEVWC G +VPGAWLEA V  ++  ++ +G++L+SG  WV    VRL
Sbjct:    1 YKIHYPGWDTRWDEWVPRNRLRWAMHHN--PMENFQV---NDRVEVWCTGSNVPGAWLEAQVKAIKGEQIFVGKMLSSGPLWVAKTRVRL 85
[Close]
BLAST of mRNA_P-littoralis_Contig738.10.1 vs. uniprot
Match: D7G101_ECTSI (Tudor-knot domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G101_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 5.340e-17
Identity = 54/157 (34.39%), Postives = 74/157 (47.13%), Query Frame = 1 
Query: 1009 GRFKHRYNMRMQDPHVGDKVEVAWKGKFRLESFEVYNGTAWWVARVV------------------DKGK------------RPGHYKVHYPGWEEKWDEWVPRDRLRWGNESLAVPLER--RSSPVKGDSVEV------WCQGLHVPGAWLEAVVYE 1365
            G  +  +  R+  P VGD VEVAWKGKFRL+   V+ G +WW A+VV                  + G+            RP  + VHY  W  +WDEW+   R+RW  +   +P E   ++S   G  +EV      WC G    GAWLEA V++
Sbjct:   54 GMVRFAFRSRLACPVVGDHVEVAWKGKFRLDDCMVFVGLSWWDAKVVAVELGESLPCTTPDDEDGEDGRVDRRGATCMGERRPKRFLVHYRSWSRRWDEWLEPSRVRWARK---MPTEACGQTSASAGPELEVDQEAELWCHGGSGGGAWLEARVHK 207
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig738.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7FY36_ECTSI1.610e-10154.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7T606_9STRA1.050e-5133.80F-box domain-containing protein n=1 Tax=Nannochlor... [more]
A0A4D9D060_9STRA5.870e-5137.01F-box domain-containing protein n=1 Tax=Nannochlor... [more]
A0A835ZI68_9STRA3.740e-5038.46Tudor-knot domain-containing protein n=1 Tax=Tribo... [more]
A0A835ZFT0_9STRA1.340e-4935.79Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4A403_9STRA1.050e-4539.18Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A8J2SC81_9STRA3.070e-3933.33Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
D8LI95_ECTSI4.850e-3936.80F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A7S2XXB7_9STRA2.030e-2050.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
D7G101_ECTSI5.340e-1734.39Tudor-knot domain-containing protein n=1 Tax=Ectoc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig738contigP-littoralis_Contig738:59133..66421 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FY36
Model size2419
Max annot lvl2880.D7FY36|-
Hectar predicted targeting categoryother localisation
Exons6
Evalue6.31e-106
EggNOG OGs2D67V@1|root,2T127@2759|Eukaryota
Ec32 ortholog descriptionF-box and Chromo domain-like protein
Ec32 orthologEc-27_006970.1
Cds size1467
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig738.10.1prot_P-littoralis_Contig738.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig738 59277..65613 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791524.050463-UTR-P-littoralis_Contig738:59132..592761680791524.050463-UTR-P-littoralis_Contig738:59132..59276Pylaiella littoralis U1_48UTRP-littoralis_Contig738 59133..59276 +
1680791524.1397927-UTR-P-littoralis_Contig738:65613..664211680791524.1397927-UTR-P-littoralis_Contig738:65613..66421Pylaiella littoralis U1_48UTRP-littoralis_Contig738 65614..66421 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791524.0659587-CDS-P-littoralis_Contig738:59276..597841680791524.0659587-CDS-P-littoralis_Contig738:59276..59784Pylaiella littoralis U1_48CDSP-littoralis_Contig738 59277..59784 +
1680791524.0798428-CDS-P-littoralis_Contig738:61439..615161680791524.0798428-CDS-P-littoralis_Contig738:61439..61516Pylaiella littoralis U1_48CDSP-littoralis_Contig738 61440..61516 +
1680791524.09217-CDS-P-littoralis_Contig738:62497..628211680791524.09217-CDS-P-littoralis_Contig738:62497..62821Pylaiella littoralis U1_48CDSP-littoralis_Contig738 62498..62821 +
1680791524.1048028-CDS-P-littoralis_Contig738:63134..632601680791524.1048028-CDS-P-littoralis_Contig738:63134..63260Pylaiella littoralis U1_48CDSP-littoralis_Contig738 63135..63260 +
1680791524.1167753-CDS-P-littoralis_Contig738:63667..638831680791524.1167753-CDS-P-littoralis_Contig738:63667..63883Pylaiella littoralis U1_48CDSP-littoralis_Contig738 63668..63883 +
1680791524.1282218-CDS-P-littoralis_Contig738:65397..656131680791524.1282218-CDS-P-littoralis_Contig738:65397..65613Pylaiella littoralis U1_48CDSP-littoralis_Contig738 65398..65613 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig738.10.1

>prot_P-littoralis_Contig738.10.1 ID=prot_P-littoralis_Contig738.10.1|Name=mRNA_P-littoralis_Contig738.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=489bp
MEWKWVNDGQLASSFGEKDEDICGPSSMPADWNNRSDFLGEWENPWYSHG
PGTVDKPCNRVDPEVFCSESAPRKAAAAGPAFRIAAVEPCARHQHPGLRC
EAVRCGQAWTVALCALWGCRDTHGLEASLSLMAAVALALFPSELGQAFAE
FDSAIKKKRASSAEIFTPSVENLVVSVAAKLKQEATACLPQHVLQFVLEF
VSISENGALCAVSKEFREAAEADALWRGAYEKRFLSQVQESRQDGEGDPS
AAGGVCGGTGGSGGDGGAAAAASTVAASGGEISVDGKFGRFKHRYNMRMQ
DPHVGDKVEVAWKGKFRLESFEVYNGTAWWVARVVDKGKRPGHYKVHYPG
WEEKWDEWVPRDRLRWGNESLAVPLERRSSPVKGDSVEVWCQGLHVPGAW
LEAVVYEVEKGRLHLGEVLTSGCFWVDVKHVRLVKQNAHDVGLRGGQQEE
AFEEMSVCRKRSILLEALSDAGFTGGGDGGCYCFCCVM*
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mRNA from alignment at P-littoralis_Contig738:59133..66421+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig738.10.1 ID=mRNA_P-littoralis_Contig738.10.1|Name=mRNA_P-littoralis_Contig738.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=7289bp|location=Sequence derived from alignment at P-littoralis_Contig738:59133..66421+ (Pylaiella littoralis U1_48)
AGCGTCACAGCGCAGGGCACAGTAGATACGCGAGAGCGCTCCCACCGCCT
CACCGGCGCCTCGCGAGCCGCCGATACAGCGCTTGATCGTCGTAGCCGGG
AACGAGACGCAGGTTGAATCTGCGAAGTTGGTTGAAACAGCGCGATGGAA
TGGAAGTGGGTGAACGACGGGCAACTCGCGTCGTCGTTCGGAGAAAAAGA
CGAAGATATCTGCGGGCCCAGCAGCATGCCGGCCGACTGGAACAACCGCA
GCGATTTCCTCGGGGAGTGGGAAAACCCCTGGTACTCGCATGGGCCAGGG
ACGGTCGACAAACCCTGCAACCGGGTTGACCCGGAGGTTTTCTGCTCAGA
ATCAGCACCTAGAAAAGCAGCAGCAGCTGGCCCTGCTTTTCGTATTGCTG
CTGTTGAACCTTGCGCACGACACCAACATCCTGGTTTGAGATGCGAAGCT
GTGCGCTGCGGCCAAGCGTGGACGGTCGCTTTGTGCGCGCTGTGGGGATG
TCGAGACACACACGGTCTTGAGGCCTCGCTGAGCTTGATGGCGGCAGTAG
CTCTCGCTCTCTTTCCTTCTGAGCTTGGCCAAGCCTTTGCCGAGTTCGAT
TCGGCGATCAAGAAGAAGCGGGCGAGCTCGGCAGAGATATTTACACCGTC
AGGTGACAAAAAATGAGGTGTCGTGTATCATAGCATGTGCATTTGACGTA
AAGTATGCTCGATCTATTTTGGTTGTCACCGAAGCATGCAAATAATCTAC
AACCGAGCGTGTGCCATGGCGGTAGTAGACACAAAGCTGGTAAAGCCCTT
CGCGAACGGAGTGTACATGTTGTAGCTCCTCCATAACTGATACGGTACGC
GGTCGGCGGCCGAGGCGCTCTCCGTAAACTTCCCATTGACCGAGTTCCAT
GGCGTGTTAAACGGATGCGGGACAAACCTCTCGTCCCTTTTGCGATATGG
CCGCGGTTTTACTGATGTATAAGGACAATGAAGAGCCATCAAGTTACGAT
AGCGGTTCGTCTCCCTCAGCGCCAATCTCCCGAAACAAAAACTCGGGAAT
GATACTGCTGTATGTCCGAGGAGATTTTGTCCATTGAGCATCTGCTGCTG
TACGTCACTTCACGCAGAATACTTCTGTGCAACAATTAACTACACGTCAG
ACCTTGGTATGTCAGGAGGTCGTGTGTATTGGGCATCTGCTGTTGTACGT
CACTTCATGCAGCACATTGCTTCAACTTACTACCTTACACGTCAATTTGG
TGAGGCTATCAAATGCAGGTAGCTCATTATACATGTTGTGCGTGTCTACA
TTACTATTATTTATCTCCCCCTCAGCAGTACACATCATCAAACAACAACA
GCGTCTTGTACTACGAAGTACTTATTTTCCATTCTTCAGCAGCAGCAGTG
GGTCGAGTATCACACATTGTACACGGCAAGGAATCTGTATTATTATTATT
GTTCCCCAAAGTCGCATAAAATGCAAACACCATCGACGAGGGAAAGGGAT
TACTGTCCCCTTTCTCGCGATAAAAGCTCAACCAAAAAGGCAAGCACCGC
AGAGGGAAGTGGAGAAAAAAAAAAAACTCCTGTGTTGACTTCCCCCTGTG
TGACCCCAGTTGGAGCGTCTACCTACCCGAAAGGTGCAGAGTGGCGTCCA
ATTAAAGGGATGACAACACACACACACACAACACACACCGACGACTTTCA
CACCAATCTATACATATACCAGTATGAAGCAACCGACAACAGAGGGATGA
ATGAAGTGGGAGACTGAATTTCGATGTATCATGTCCAATATGTATCCAAC
CGAACACAATGAACGCCCAGGAATATGCAACCAGCACAAGTACTCATATA
GGCCGTAAATATTCACCACATGATTTGACGTGTGTAACACAAGACGACCA
TCAAATTGTCTTGTTTAAGCCTGATAACCTCAGGGGAGCTGCAACGGTAC
ATTATCTGATGAGTTATAGAAACACAGGTGGATGTCTCTTATTGTTTTTG
TTCGTTGCTAATCTATTCCAGATCCTTATCTGGAGAGAGACGGACATTTG
ATTGATGTGTAATATAAAATGAAAACAGGCGAGGGGCTTCTCGTTAAGTT
TCACTTCGAAACATTCGTCGTGCGTTTGTCACACATTTTCCAGTGAAGAA
CGCCGTCGTTTGCATCCTCGGCAACCAATCAGCGATGCGCGATATCGATG
CCCGTCGTGTGTTCTTGAAATCAAGGGAGGTATGATATAAAAAAGCATGG
TGTTTACCACCACCGCCGTCGCCGTTGTTGTCGCTTCGTCCTTTCTGCTC
TCGACAGTTGAAAACCTGGTAGTCTCCGTTGCGGCCAAGTTAAAGCAGGA
AGCGACAGCATGTCTGCCCCAGCACGTGCTGCAGGTGTGTGTGTGTCTGT
GTGTCAACGGCACCAACCAGCCACGACGTTAGCAACGCACCATCATGGAA
AAAACGAAGCACGTTCATGAAGGAGAGGTTTCGTTGTCGCAGACAGAACT
AAACCGTTGTTTGTTTCAAAACTCTGTAGAATTGCTCAAGAGGCATTATT
ATTTAGGGTCCGGGGATAGCCCAAGATGCATTATTATTTGAGGTCCGGGG
ATACAACTATAGTGAAGAACCAGGGTCACACACCTTGCCACTCCTTCGAA
GTAAAGGTTCACGTCATGGATCGTACCCGTTAGAGAGCTTGGAGATAGAA
AGCAGAAGAAGTGGACAGAAAAGGAACTCTAGGATGGCCAGCTTGGGTAG
TGGCCTAGTGCGTCTGAGTGCCCATGTGTGTCTTTTCCCACCCACTCACC
CTTTTCTTTCGAAGGTGGGGGAAGGGAGGAGATAGCTTTGTACTTTGTAG
CAAGATTGGCGCAGGAAATGGTAAAGTACCATTTGGGTACTCGTTCACCT
GAGAATGTTGCGACAGTAAAAGGTAGCCATTACCTACACCGGAGGAAAAG
AAAACCCCGGTTGTCATTTTGGAGAGAGAGACGAATAGTGATTAGCGGAG
ACACAGTAAAATAGGGCGGACAATGGTTGAGGAAGCGTGTCCCTGCCAGG
GTAGTTTCTCTCTCTCTCATCCCTCGGGCTGAGAAATAATAATAATACAA
GGCAATTCGAAAGAACTAAAAAATAAACGTTGCGTGATACTCAGGACGAG
AACCAACTTTCAGCTGCACGTGCGTGCACCACCACCAACCGGCGGTGAAA
CGTTTTTTTTTACGTATGATATCAGGACCCTCAACTTTAAGCGTCGCCGA
CCAATGTTTGTGCGCTCCAATCCAAAAGAGAATATTTTGATCCAAAGGTC
AACGGACTATGTGATGAGGCGACCAGCATTTTAACAAAATATCTGGATGA
ACGTGCTTATTTCAGTTCGTCCTAGAGTTTGTCAGTATATCGGAGAATGG
TGCGCTGTGCGCGGTGAGCAAGGAGTTCCGGGAAGCCGCCGAGGCAGACG
CCTTGTGGCGCGGAGCGTACGAGAAACGGTTTCTCAGTCAGGTCCAAGAG
AGCAGACAAGACGGGGAAGGGGACCCCTCCGCTGCTGGTGGGGTTTGCGG
TGGCACCGGCGGTAGTGGTGGTGATGGAGGTGCAGCGGCCGCTGCCAGCA
CGGTGGCGGCAAGCGGGGGAGAAATCTCAGTCGACGGGAAATTTGGTCGC
TTCAAGCACCGCTACAATATGCGCATGCAAGACCCTCACGTGAGTGTTTT
TCTAGCGGGACTGCAGAATTCTGACTGACAAAAACTGCAATCTGGATGAG
GACGGTTGCCTCGCTGCGATCGCGATTGCGTAGTAAAGCTAGTGGTGCAG
AGAAGCCGGCCTCAAAAGTGTAATGTGTAACGTTGTTCACAAAAAAAAGC
GCAGCATGTTCACACGAGACAGCACCCTCTATTCCAGGCGTACCATGCAA
AAACAGGCCGAAAATGTGTGCATCCGACGACCATCTTACTAGTTCGACTT
TGTGTCCCGCTCGGTCGATTCCGACTCCGTTTCTGTGTTTCTTCGACCAC
AGGTGGGCGATAAGGTGGAAGTGGCGTGGAAGGGAAAGTTCCGACTAGAG
TCTTTCGAGGTTTATAACGGCACCGCCTGGTGGGTTGCCCGAGTCGTGGA
CAAGGGCAAACGTCCGGGGCACTACAAGGTACGCGAAACGTTGCCCGCGC
CTCTCTTTGTTTACACTAACCCATCAGTGCATACAGTAGACGAATAGTCG
TCGGCATGCTGTCAGAACGGCATTTTTAGTCGAATAATGGTACGCTATGA
TGTGTGAGCCTTGCCCCTACGGTAGGTCAGTCACTTCCCCTCCCTGACTA
TTTTTCGCTTCGCCGGCTCATGCCACCACAGCAGCAGGTACACATGCGCA
GCGGCCAAAAACACAACAGCAGATATGCACCCATTCTGAAAACAGAAGAT
TCGCGAATGACAAGGGCGCACACCCCCCTACCCCTACGGCTGCACATTCT
CCGACCATTATCGCCTCGACCCCTGTAAGAGCCCCCTTGTGCTCCCAACG
TAAAAAAAAAAACGTTTCAACCAACTGTCGTACAGGTCCACTATCCAGGT
TGGGAAGAGAAGTGGGACGAGTGGGTGCCCCGGGATCGCCTTCGGTGGGG
GAATGAGAGTCTCGCGGTGCCCCTGGAAAGAAGAAGTTCTCCCGTGAAGG
GCGATTCCGTGGAGGTGTGGTGCCAAGGCTTGCACGTGCCTGGCGCTTGG
CTGGAGGCAGTGGTGTACGAGGTCGAGAAGGGTCGTCTTCACCTCGGAGA
GGTGAACGGAGGCACAAGTAGGGCTGTCGGAAATGTTTTTATTGACGTGT
CACAGGTCAGACCGGGTTTTCACCCCCATTTGTTTCTCGCCTTAGCTTTG
AATATTGACTACCAGGTAATCATGATTGACCCCGATTGAGACTGAGCACC
GTTGTTTTTTCTGTCCCTATCGGGGTCGGTCAGGAAGTGCGGTGGGGGGA
AATAGTTGAGACTTCCCAGAAGTAGCACGAGGGATCTTCGAGGATTGTCC
TGCTTTCCTACCTAGAATGAAGGAGACGGGGTTCGTGTTTCATTTGTTCG
AGACGTGTCAAGCACCCGCTTTGGGTATATGTGAAGGAGTAGACTGCTCA
GCCATCGGGTAAAAGGTGAACCATTTACCCGAGTGAGGACTACACCTCTT
AACACTCTCCGGTACTGACACCTGGATGGGAAATGATCAGGACCGACTTC
CCTGGAAGGACCTGATGCTTTTTCCACCCAGGATTTTATATGACAGAGCC
GGGGCCCTCAATGAGTGTTACTTCTCACGCATAGCTTTTCTGAAAAAGAA
GTGGGCACGTTGGAATCAAACCCACGACTCTAAACCTAATCAGCGTCAGA
TGTGAAGGAGTGGACTGCTAAGCCGTCGAGTAGAAGGTTGACCATTCAAC
CGAGTGAGCTCTTCACCTCTTAACATATACTTCGTATATATATACTTCGA
AGTAGTTCGGAAGGAGGGGGCTAGTGATCGCACTGAATGCACGCATGTGC
TTTCCGGTTCAGCTACCCAACCCCGCGCTACTGAATATCTTCCAGCCAGA
AAAACACGATCACACGATCACGTCAGGCGTGGATATGGCTTCTTGACCGC
CTAAAAAAACCGGACGAGGCTGATACATCTATGCATTTACTTATGCGTGG
GCTGAGCAGTGATATGCGTGGCAGGAACTCACTGTGTAGCTCAGAGCCCT
TTCTCCAGAGTAGCAGATGCTGTGACTGATAGGTCACGGTGTAGAGACAT
AATGTTTGACTTGGTGATTTGATTTTGGGTTGAGATAGAGTGAGACTATG
TGGATGGTGCGGCACTCAGCTCATACACTATGGATCTTCTTGACTCATCC
CAGTATTACTTTGAATCTTTACCACATGTCCTATATAAGCTACACTGGCT
TTGGGCACTAAGAGTGTCACCCCCATGGTGATAACTTATTCTCCTATCTT
AGGCTTTCACTTGATAACCTTTAATCACAAAATACAATGAATATGGCAAT
ACCTGGTATGAGATTGTCAAATCTACCGACATCTAAATAATACTAGTATA
CTGTCGTTTTATCTCATTCTCACGTAATGCAGCTATTGTATCAACCATGT
ACTGTATTAAACTTCGTAGTATATCTAAACATTCAGCTGTCCGATGCAAT
GCACGGCCTTTCAAAAACGTGTACGCACCCACGTCTTCTCCCTCTTTTGA
CCTCTCTCTTTCGCCGGACCCATAATTTTTACCTGTCTCTTCCTCGGCAA
TCGACGACGCCACAGGTGTTAACGTCGGGGTGCTTCTGGGTTGACGTCAA
GCACGTGCGTCTCGTCAAGCAAAACGCGCACGACGTGGGCCTGCGCGGGG
GCCAGCAAGAGGAGGCGTTCGAGGAAATGTCCGTGTGCCGCAAGAGAAGC
ATCTTGCTGGAAGCCCTGAGCGACGCCGGCTTCACAGGCGGCGGCGATGG
CGGCTGCTACTGCTTCTGCTGCGTCATGTGAAAATATTTCTTAATTTTGC
TTTTGGTACTAGACATGGCTTTGTCATTATTGCGTCTTGCGATTAGGGCA
ATACCTCTCGATACATGATTTTTGCACATCATCCGTAAAAGATGTATGTG
GTTCTGATCAGGTGCTGTTGCTGTCCATGCGTTTTTGTCAATTTTCCGGA
AGGAGCGGTCCGTCAAGGGTTTGACACGTTTATCGAAGGTAAGTATTACG
GTGTACAGCGGAACCTGTTATTTCCGATTGTTGATTGAAACGGTGTTTTT
TTTCATTTGCCAAGTTCGTGGACGGGCCGGGCCATCTGACTGTGTTTTCA
AGGTTCCCAACAAGAAAACACAAAATGAAGTCGGAGCAATTTTGTAATTT
TAACATGGGTGAAGGAGAACATTTTGTTTTCCTTCCGCCTTGTTCGGAAT
CTAAGGAGGCTGCTGTATGCTTAGGACCACCTCTGGGTTGTGGGAAAGTT
TGGGGGTGCGGCCATCATTGTCACACCACAGTTAGTTGCCGTTTTTGGTC
ATTTCAGGCAGACAAAAAACGCACCAGGTGCACATCAAATCAACCCCGTT
TCTTCGGGTTCGCGTTCAGACGGACAGCACGGCCAACACACCCACCGACG
CTGTAACTATATGTGTGTGCATGACCCGTTCAAGTGCAGGGTTCGTCGGG
TGTCAAACTGCTGCTGCTACTACTTGCAGACTTTCACACAGATCTATGGC
AGCTGTCTTTCAGTCCAGGGCGGGGGGGGTTCTTAAGGCTATAACACGGC
AGTATCGTGATGTGTACGTAATTTCCGTACTGGTGAAAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig738:59133..66421+

>mRNA_P-littoralis_Contig738.10.1 ID=mRNA_P-littoralis_Contig738.10.1|Name=mRNA_P-littoralis_Contig738.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1467bp|location=Sequence derived from alignment at P-littoralis_Contig738:59133..66421+ (Pylaiella littoralis U1_48)
ATGGAATGGAAGTGGGTGAACGACGGGCAACTCGCGTCGTCGTTCGGAGA
AAAAGACGAAGATATCTGCGGGCCCAGCAGCATGCCGGCCGACTGGAACA
ACCGCAGCGATTTCCTCGGGGAGTGGGAAAACCCCTGGTACTCGCATGGG
CCAGGGACGGTCGACAAACCCTGCAACCGGGTTGACCCGGAGGTTTTCTG
CTCAGAATCAGCACCTAGAAAAGCAGCAGCAGCTGGCCCTGCTTTTCGTA
TTGCTGCTGTTGAACCTTGCGCACGACACCAACATCCTGGTTTGAGATGC
GAAGCTGTGCGCTGCGGCCAAGCGTGGACGGTCGCTTTGTGCGCGCTGTG
GGGATGTCGAGACACACACGGTCTTGAGGCCTCGCTGAGCTTGATGGCGG
CAGTAGCTCTCGCTCTCTTTCCTTCTGAGCTTGGCCAAGCCTTTGCCGAG
TTCGATTCGGCGATCAAGAAGAAGCGGGCGAGCTCGGCAGAGATATTTAC
ACCGTCAGTTGAAAACCTGGTAGTCTCCGTTGCGGCCAAGTTAAAGCAGG
AAGCGACAGCATGTCTGCCCCAGCACGTGCTGCAGTTCGTCCTAGAGTTT
GTCAGTATATCGGAGAATGGTGCGCTGTGCGCGGTGAGCAAGGAGTTCCG
GGAAGCCGCCGAGGCAGACGCCTTGTGGCGCGGAGCGTACGAGAAACGGT
TTCTCAGTCAGGTCCAAGAGAGCAGACAAGACGGGGAAGGGGACCCCTCC
GCTGCTGGTGGGGTTTGCGGTGGCACCGGCGGTAGTGGTGGTGATGGAGG
TGCAGCGGCCGCTGCCAGCACGGTGGCGGCAAGCGGGGGAGAAATCTCAG
TCGACGGGAAATTTGGTCGCTTCAAGCACCGCTACAATATGCGCATGCAA
GACCCTCACGTGGGCGATAAGGTGGAAGTGGCGTGGAAGGGAAAGTTCCG
ACTAGAGTCTTTCGAGGTTTATAACGGCACCGCCTGGTGGGTTGCCCGAG
TCGTGGACAAGGGCAAACGTCCGGGGCACTACAAGGTCCACTATCCAGGT
TGGGAAGAGAAGTGGGACGAGTGGGTGCCCCGGGATCGCCTTCGGTGGGG
GAATGAGAGTCTCGCGGTGCCCCTGGAAAGAAGAAGTTCTCCCGTGAAGG
GCGATTCCGTGGAGGTGTGGTGCCAAGGCTTGCACGTGCCTGGCGCTTGG
CTGGAGGCAGTGGTGTACGAGGTCGAGAAGGGTCGTCTTCACCTCGGAGA
GGTGTTAACGTCGGGGTGCTTCTGGGTTGACGTCAAGCACGTGCGTCTCG
TCAAGCAAAACGCGCACGACGTGGGCCTGCGCGGGGGCCAGCAAGAGGAG
GCGTTCGAGGAAATGTCCGTGTGCCGCAAGAGAAGCATCTTGCTGGAAGC
CCTGAGCGACGCCGGCTTCACAGGCGGCGGCGATGGCGGCTGCTACTGCT
TCTGCTGCGTCATGTGA
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