mRNA_P-littoralis_Contig738.23.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig738.23.1
Unique NamemRNA_P-littoralis_Contig738.23.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig738.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig738contigP-littoralis_Contig738:114513..115142 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size596
Hectar predicted targeting categoryother localisation
Exons2
Cds size429
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791523.4173775-CDS-P-littoralis_Contig738:114512..1148211680791523.4173775-CDS-P-littoralis_Contig738:114512..114821Pylaiella littoralis U1_48CDSP-littoralis_Contig738 114513..114821 -
1680791523.4321942-CDS-P-littoralis_Contig738:114857..1149771680791523.4321942-CDS-P-littoralis_Contig738:114857..114977Pylaiella littoralis U1_48CDSP-littoralis_Contig738 114858..114977 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791523.4408343-UTR-P-littoralis_Contig738:114977..1151421680791523.4408343-UTR-P-littoralis_Contig738:114977..115142Pylaiella littoralis U1_48UTRP-littoralis_Contig738 114978..115142 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig738.23.1prot_P-littoralis_Contig738.23.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig738 114513..114977 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig738.23.1

>prot_P-littoralis_Contig738.23.1 ID=prot_P-littoralis_Contig738.23.1|Name=mRNA_P-littoralis_Contig738.23.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=143bp
MHQSARRYICSRGRTIHTTVRPFSRKTKQMTAAAVVKAGAISISAVGSRS
LGHIYRMLCWYSLLAGTLRKLIYEYVQPARPTTRLHLRYHETFYHVSATY
VNRAVGVRVLYEVNSSTAAEESLRRPSESWCMMSVEAAFSGGC
back to top

mRNA from alignment at P-littoralis_Contig738:114513..115142-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig738.23.1 ID=mRNA_P-littoralis_Contig738.23.1|Name=mRNA_P-littoralis_Contig738.23.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=630bp|location=Sequence derived from alignment at P-littoralis_Contig738:114513..115142- (Pylaiella littoralis U1_48)
GGTAAAGTCCGTGGGAACTTGGCGGCGGTCGAAGCATGGTGATCACGCCG
CGAAACGGGGGTGTTATGTAACTAGGCTGGTGGTGGCAGCAAGGTGGCGG
TAAGTGACCAAAGTTGGTTCTCTCTCTGACGACTCGGAACTATAACACGC
GGCCGGCCGAATGGAATGCATCAATCGGCAAGACGATACATTTGTTCGCG
GGGCCGAACCATTCATACCACGGTGCGGCCGTTTTCCCGAAAGACAAAAC
AAATGACGGCAGCTGCGGTGGTTAAGGCGGGGGCGGCGTGGGCATGAACA
GGGAGCAAGATACCGTAGTAGATTTCGATTTCGGCCGTCGGTTCGAGGTC
GCTGGGGCACATATATCGTATGTTGTGTTGGTATTCCCTCCTCGCCGGGA
CTTTGCGCAAATTGATTTATGAATATGTCCAACCGGCGCGTCCTACTACA
CGGCTACACCTCCGATACCATGAAACATTCTATCACGTCAGTGCAACATA
CGTGAATAGAGCAGTCGGTGTCAGGGTACTCTATGAAGTCAACAGCTCCA
CCGCCGCCGAAGAAAGCCTGCGCCGACCTTCAGAAAGTTGGTGCATGATG
AGTGTAGAAGCAGCTTTTTCGGGGGGTTGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig738:114513..115142-

>mRNA_P-littoralis_Contig738.23.1 ID=mRNA_P-littoralis_Contig738.23.1|Name=mRNA_P-littoralis_Contig738.23.1|organism=Pylaiella littoralis U1_48|type=CDS|length=429bp|location=Sequence derived from alignment at P-littoralis_Contig738:114513..115142- (Pylaiella littoralis U1_48)
ATGCATCAATCGGCAAGACGATACATTTGTTCGCGGGGCCGAACCATTCA
TACCACGGTGCGGCCGTTTTCCCGAAAGACAAAACAAATGACGGCAGCTG
CGGTGGTTAAGGCGGGGGCGATTTCGATTTCGGCCGTCGGTTCGAGGTCG
CTGGGGCACATATATCGTATGTTGTGTTGGTATTCCCTCCTCGCCGGGAC
TTTGCGCAAATTGATTTATGAATATGTCCAACCGGCGCGTCCTACTACAC
GGCTACACCTCCGATACCATGAAACATTCTATCACGTCAGTGCAACATAC
GTGAATAGAGCAGTCGGTGTCAGGGTACTCTATGAAGTCAACAGCTCCAC
CGCCGCCGAAGAAAGCCTGCGCCGACCTTCAGAAAGTTGGTGCATGATGA
GTGTAGAAGCAGCTTTTTCGGGGGGTTGC
back to top