mRNA_P-littoralis_Contig737.24.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig737.24.1
Unique NamemRNA_P-littoralis_Contig737.24.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig737.24.1 vs. uniprot
Match: A0A6H5JNH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNH6_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 4.480e-32
Identity = 55/59 (93.22%), Postives = 56/59 (94.92%), Query Frame = 2 
Query:  101 DILKEVLFLRQVWRFMLLSAGMPCIPVFEDNQGAI*IAHNPITNSNSKHIDVRHHFIRE 277
            D+LKEVLFLRQVWRFML  AGMPCIPVFEDNQGAI IAHNPITNSNSKHIDVRHHFIRE
Sbjct:   19 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRE 77
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BLAST of mRNA_P-littoralis_Contig737.24.1 vs. uniprot
Match: A0A6H5K268_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K268_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.730e-30
Identity = 55/59 (93.22%), Postives = 56/59 (94.92%), Query Frame = 2 
Query:  101 DILKEVLFLRQVWRFMLLSAGMPCIPVFEDNQGAI*IAHNPITNSNSKHIDVRHHFIRE 277
            D+LKEVLFLRQVWRFML  AGMPCIPVFEDNQGAI IAHNPITNSNSKHIDVRHHFIRE
Sbjct:   37 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRE 95
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BLAST of mRNA_P-littoralis_Contig737.24.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 6.960e-30
Identity = 55/59 (93.22%), Postives = 56/59 (94.92%), Query Frame = 2 
Query:  101 DILKEVLFLRQVWRFMLLSAGMPCIPVFEDNQGAI*IAHNPITNSNSKHIDVRHHFIRE 277
            D+LKEVLFLRQVWRFML  AGMPCIPVFEDNQGAI IAHNPITNSNSKHIDVRHHFIRE
Sbjct:  221 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRE 279
[Close]
BLAST of mRNA_P-littoralis_Contig737.24.1 vs. uniprot
Match: A0A6H5K684_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K684_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 7.100e-30
Identity = 55/59 (93.22%), Postives = 56/59 (94.92%), Query Frame = 2 
Query:  101 DILKEVLFLRQVWRFMLLSAGMPCIPVFEDNQGAI*IAHNPITNSNSKHIDVRHHFIRE 277
            D+LKEVLFLRQVWRFML  AGMPCIPVFEDNQGAI IAHNPITNSNSKHIDVRHHFIRE
Sbjct:  211 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRE 269
[Close]
BLAST of mRNA_P-littoralis_Contig737.24.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 4.150e-29
Identity = 55/59 (93.22%), Postives = 56/59 (94.92%), Query Frame = 2 
Query:  101 DILKEVLFLRQVWRFMLLSAGMPCIPVFEDNQGAI*IAHNPITNSNSKHIDVRHHFIRE 277
            D+LKEVLFLRQVWRFML  AGMPCIPVFEDNQGAI IAHNPITNSNSKHIDVRHHFIRE
Sbjct:  338 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRE 396
[Close]
BLAST of mRNA_P-littoralis_Contig737.24.1 vs. uniprot
Match: A0A6H5KFJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ4_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 7.940e-29
Identity = 47/60 (78.33%), Postives = 55/60 (91.67%), Query Frame = 2 
Query:   98 IDILKEVLFLRQVWRFMLLSAGMPCIPVFEDNQGAI*IAHNPITNSNSKHIDVRHHFIRE 277
            +D++KE+LFLRQ+WRFML   GMPCIPVFEDNQGAI +A NPI+NSNSKHIDVRHHF+RE
Sbjct:   17 VDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRE 76
[Close]
BLAST of mRNA_P-littoralis_Contig737.24.1 vs. uniprot
Match: A0A6H5JTT9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT9_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 9.910e-29
Identity = 52/59 (88.14%), Postives = 53/59 (89.83%), Query Frame = 2 
Query:  101 DILKEVLFLRQVWRFMLLSAGMPCIPVFEDNQGAI*IAHNPITNSNSKHIDVRHHFIRE 277
            D+LKEVLFLRQVWRFML  AGMPCIPVFEDN   I IAHNPITNSNSKHIDVRHHFIRE
Sbjct:   69 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNNQRIQIAHNPITNSNSKHIDVRHHFIRE 127
[Close]
BLAST of mRNA_P-littoralis_Contig737.24.1 vs. uniprot
Match: A0A6H5KBD2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD2_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 1.090e-28
Identity = 54/64 (84.38%), Postives = 59/64 (92.19%), Query Frame = 2 
Query:   89 YFSI-DILKEVLFLRQVWRFMLLSAGMPCIPVFEDNQGAI*IAHNPITNSNSKHIDVRHHFIRE 277
            YFS+ D++KEVLFLRQVWRFML  AGMPCIPVFEDNQGAI +A NPI+NSNSKHIDVRHHFIRE
Sbjct:  234 YFSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRE 297
[Close]
BLAST of mRNA_P-littoralis_Contig737.24.1 vs. uniprot
Match: A0A6H5L3H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H4_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 1.090e-28
Identity = 54/59 (91.53%), Postives = 55/59 (93.22%), Query Frame = 2 
Query:  101 DILKEVLFLRQVWRFMLLSAGMPCIPVFEDNQGAI*IAHNPITNSNSKHIDVRHHFIRE 277
            D+LKEVLFLRQVWRFML   GMPCIPVFEDNQGAI IAHNPITNSNSKHIDVRHHFIRE
Sbjct:  313 DVLKEVLFLRQVWRFMLPDTGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRE 371
[Close]
BLAST of mRNA_P-littoralis_Contig737.24.1 vs. uniprot
Match: A0A6H5KD11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD11_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.790e-28
Identity = 55/59 (93.22%), Postives = 56/59 (94.92%), Query Frame = 2 
Query:  101 DILKEVLFLRQVWRFMLLSAGMPCIPVFEDNQGAI*IAHNPITNSNSKHIDVRHHFIRE 277
            D+LKEVLFLRQVWRFML  AGMPCIPVFEDNQGAI IAHNPITNSNSKHIDVRHHFIRE
Sbjct:  364 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRE 422
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig737.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNH6_9PHAE4.480e-3293.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K268_9PHAE1.730e-3093.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP70_9PHAE6.960e-3093.22Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K684_9PHAE7.100e-3093.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEF2_9PHAE4.150e-2993.22Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KFJ4_9PHAE7.940e-2978.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTT9_9PHAE9.910e-2988.14Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBD2_9PHAE1.090e-2884.38Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L3H4_9PHAE1.090e-2891.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KD11_9PHAE1.790e-2893.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig737contigP-littoralis_Contig737:69860..70368 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size405
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size129
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791523.2607033-CDS-P-littoralis_Contig737:69859..699871680791523.2607033-CDS-P-littoralis_Contig737:69859..69987Pylaiella littoralis U1_48CDSP-littoralis_Contig737 69860..69987 -
1680791523.270644-CDS-P-littoralis_Contig737:70091..700921680791523.270644-CDS-P-littoralis_Contig737:70091..70092Pylaiella littoralis U1_48CDSP-littoralis_Contig737 70092..70092 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791523.2805445-UTR-P-littoralis_Contig737:70092..703681680791523.2805445-UTR-P-littoralis_Contig737:70092..70368Pylaiella littoralis U1_48UTRP-littoralis_Contig737 70093..70368 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig737.24.1prot_P-littoralis_Contig737.24.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig737 69860..70092 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig737.24.1

>prot_P-littoralis_Contig737.24.1 ID=prot_P-littoralis_Contig737.24.1|Name=mRNA_P-littoralis_Contig737.24.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=43bp
MVERKEISITHVTSEYQHADFLTKAISRESFDLHRGFVMNLQ*
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mRNA from alignment at P-littoralis_Contig737:69860..70368-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig737.24.1 ID=mRNA_P-littoralis_Contig737.24.1|Name=mRNA_P-littoralis_Contig737.24.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=509bp|location=Sequence derived from alignment at P-littoralis_Contig737:69860..70368- (Pylaiella littoralis U1_48)
TCTTCTCATACTTCAGTACAATATTAGTCGGTAAACAACTGGTCGGAAAA
CTGATGGTTGGTGAGTTTTCTAGAAGTAGTGCCGTTTGTATTTTTCGATT
GATATCTTGAAGGAAGTGTTGTTTTTGAGGCAGGTTTGGCGTTTTATGTT
GCTATCAGCGGGCATGCCTTGCATCCCAGTGTTCGAGGACAACCAGGGTG
CGATTTAGATCGCCCATAATCCAATCACCAACTCGAACTCGAAGCACATA
GACGTACGGCATCACTTTATCAGGGAACTGGTAGAGAGGAAGGAGATTTC
GATCACACACGTGACGTCGAAATCCAATCACCAACTCGAACTCGAAGCAC
ATAGACGTACGGCATCACTTTATCAGGGAACTGGTAGAGAGGAAGGAGAT
TTCGATCACACACGTGACGTCGGAATATCAGCATGCAGATTTCTTGACGA
AAGCAATCAGCAGGGAGTCTTTTGACCTGCACCGTGGTTTTGTGATGAAT
TTGCAATGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig737:69860..70368-

>mRNA_P-littoralis_Contig737.24.1 ID=mRNA_P-littoralis_Contig737.24.1|Name=mRNA_P-littoralis_Contig737.24.1|organism=Pylaiella littoralis U1_48|type=CDS|length=129bp|location=Sequence derived from alignment at P-littoralis_Contig737:69860..70368- (Pylaiella littoralis U1_48)
ATGGTAGAGAGGAAGGAGATTTCGATCACACACGTGACGTCGGAATATCA
GCATGCAGATTTCTTGACGAAAGCAATCAGCAGGGAGTCTTTTGACCTGC
ACCGTGGTTTTGTGATGAATTTGCAATGA
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