mRNA_P-littoralis_Contig737.4.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig737.4.2
Unique NamemRNA_P-littoralis_Contig737.4.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig737.4.2 vs. uniprot
Match: A0A6H5L4I0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I0_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 9.040e-13
Identity = 57/204 (27.94%), Postives = 92/204 (45.10%), Query Frame = 2 
Query:   92 LLTKFAAKHFANERQKSQGMHVVRCGNGLFVVKKHTANGWRGNKTKMVFPSEGQEAKIICSCAYPARWGLLCQHGFAVLRD*DKMHQAIAYIDNDYLAERYRAF*TDPDCCVVPPIPSLLEEDPLLLPAADVKGKGGRPKKGPRKRARVQVNGEFHNSARHCMRVERLMTSDG-----------AGAGASXXXLSQTGLSQSTP 670
            L+T FA K +  E   +  + V   G   ++V     N +  N+  + +  +       C+C +  R+ + C+H  AV +  +  ++ +  I   Y    YRA   D    ++PP+   L  +P   P  +V+G  GRPK GPRK+ R+Q NGE + S+R          ++G           AG G++   LSQ G SQ  P
Sbjct:  442 LVTPFATKTWEAEFVLADSLSVSPVGGDQYMVYPQQ-NSFLSNRVNLTWGDDADGHHYDCTCDFCPRFKIPCRHVIAVAKSTETANRGLELISKGYSLATYRAAANDSRYRIIPPVWDDLTVNPQHRPPLEVEGAAGRPKSGPRKKKRIQSNGEMNTSSRSYAIYNANARANGGVGVMPTGGGAAGGGSNTVDLSQ-GASQGAP 643
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig737.4.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L4I0_9PHAE9.040e-1327.94SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig737contigP-littoralis_Contig737:42214..44811 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size987
Hectar predicted targeting categoryother localisation
Exons3
Cds size336
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791523.091066-UTR-P-littoralis_Contig737:42213..428631680791523.091066-UTR-P-littoralis_Contig737:42213..42863Pylaiella littoralis U1_48UTRP-littoralis_Contig737 42214..42863 -
1680791523.142138-UTR-P-littoralis_Contig737:44810..448111680791523.142138-UTR-P-littoralis_Contig737:44810..44811Pylaiella littoralis U1_48UTRP-littoralis_Contig737 44811..44811 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791523.109112-CDS-P-littoralis_Contig737:42863..428681680791523.109112-CDS-P-littoralis_Contig737:42863..42868Pylaiella littoralis U1_48CDSP-littoralis_Contig737 42864..42868 -
1680791523.1203074-CDS-P-littoralis_Contig737:44246..444311680791523.1203074-CDS-P-littoralis_Contig737:44246..44431Pylaiella littoralis U1_48CDSP-littoralis_Contig737 44247..44431 -
1680791523.1325173-CDS-P-littoralis_Contig737:44664..448101680791523.1325173-CDS-P-littoralis_Contig737:44664..44810Pylaiella littoralis U1_48CDSP-littoralis_Contig737 44665..44810 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig737.4.2prot_P-littoralis_Contig737.4.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig737 42864..44810 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig737.4.2

>prot_P-littoralis_Contig737.4.2 ID=prot_P-littoralis_Contig737.4.2|Name=mRNA_P-littoralis_Contig737.4.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=112bp
MAPPLMAFNLVERIATVFAERGKHLEGSAQLLTKFAAKHFANERQKSQGM
HVVRCGNGLFVVKKHTANGWRGNKTKMVFPSEGQEAKIICSCAYPARWGL
LCQHGFAVLRD*
back to top

mRNA from alignment at P-littoralis_Contig737:42214..44811-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig737.4.2 ID=mRNA_P-littoralis_Contig737.4.2|Name=mRNA_P-littoralis_Contig737.4.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=2598bp|location=Sequence derived from alignment at P-littoralis_Contig737:42214..44811- (Pylaiella littoralis U1_48)
TATGGCTCCTCCGCTCATGGCTTTCAACCTGGTGGAGAGGATCGCCACCG
TCTTTGCCGAACGGGGCAAGCACCTGGAAGGCTCCGCCCAACTCCTCACC
AAGTTCGCTGCCAAGCACTTTGCCAACGAGAGGCAGAAGTCGCAGGGGTA
AGCTTGTTTGGTCATGTTTTCCTGTCCAGTGTTTGTTGCAGATGCCGTCG
ATCTTGCTCCTTTTTTGTTGTTTTCTAGCCGTACACAAGGTTGGTTCGGT
TTTCAATGTCAAAGGGAAGAAGGACGGCACCACCAAAACAAATGTGTGCG
GTAGTTGCTCGCTTTGGTTGCGTTGGCCTCTTCCATTGACTTGCTTGTCG
CTTGTTTATTCCGACATGCATGCCTGACAGGATGCATGTTGTCCGATGCG
GTAACGGACTGTTCGTCGTCAAGAAGCACACCGCGAATGGATGGCGCGGA
AACAAAACGAAGATGGTTTTCCCGTCTGAGGGACAGGAGGCGAAGATCAT
CTGCAGCTGCGCATACCCGGCTAGGTGGGGCCTGCTCTGCCAACACGGGT
TCGCTGTCCTGAGAGGTACGCGATTTCGTGTGTTGTGGTGTGTAATGATT
GTGGGCAATTGCCGTTTATATTCACCAAGTTCGTGTTAAACGTAGAGCGT
TCTGTGGTTTTGCTGTGGGTATGCTCCCTCTTTTTTAGTTGGTTTTAGTT
GGCTCCCCTTTGTATTCCACTGCTGTATTGTGGTATTTTGGTTTGAGGGC
CCTTTCTGTTTGGCTGTTTGGTACGGCTGTTGACACGATACCGCCCCTAC
TGTTTTAACCCTTCTCTGTGACCACCCAGTGATTTTTGCAACACAAAATT
TAAAATTCCCTTTAAAATTGACCCTTTAAAATTTATCATCGTTTTTTTGT
AACCGGTCCATTCGGGCTTGAGCCAAAAATTCCCATCTCGAACCACAGCG
AAGGAGAGAGGTTGTTTTTTGTTTTTCCCCTTGTTTTTTGGTTTTTTGCA
CGATGAATGAATACAGCAGTGATCACATGGCAACACACACGCTGCGTTTG
TATCATGCACACATAGGGGGCTGCTGTCCAGTCAGTGGCTCACATACAGC
AGCAGCAGTGGCAGCAGCAACAGAAACAACTCCTTCAGCGGGGCACGCTG
AAAGTAGTTTTGCACACCAAAATTGATGGGTCATCATCTCATCATCATGC
ATGGCGGCGGTGCTGCTGCGTTGCATCTCCTCTTTCGCCTCGCACACGCA
TCGTACACTACAACCACCTACCACCTTGCCCGGTCAGCCACCACACGTGC
AGCAGCAGCATTAGTTCACGTATAGGAGCTAGCACAGCAGCAGCATAGCA
CATACATACACAAAAATGTTGTCAGATAGTCGTGGGAACGAACTACTGTG
AAACTGAGTACACACAGCAGCAGCAGTCAGTGTGTGTCTGGTGCATGCAG
CTCAGCAGCAGCAGTATACTAGAGCCCATTTTATACCGCTGGTGAATAAA
TAAAACAGAAGTGCATGTCGTCGTAGTGGAGCTACAGTGCTTCCTTCCAA
TAGCTCGTTATCATTTTTGAGGTTTTGTCGTCATTTGTATGCTCAACTCT
AGAACTGCTATGGGGCTTTTTCTTGATAAATGGCGAAGGCGTGAGAAGTA
CACTTTTGGTTTGTTTCGTCCAGCTGCGCATTTTTGTCTCCCTCTCTCGT
GTTCTCGGGGGCTTATTTTCTGGTTCTAATTTGGAATCCGGGTATCGCAT
GGAAAGTCCCAGAACGGTTAACGACAGACTCGAGCGTAGCAAGTTGGAAC
CTTTTTGAATTTTTGAACCCCCTCATAATTAATTAGTTGATAACCGTTAC
AAGGGCCTTGACACTTTACGAACGGCTTACCGAACCTATGCCCCCCCATG
TTACCACCGTCGCATCCGCCCTATTCCCCTTCGGTTTTATCAGACTAGGA
CAAAATGCATCAGGCGATAGCTTACATCGACAACGACTACCTCGCGGAGC
GCTACCGTGCTTTCTAAACAGACCCGGACTGCTGCGTGGTACCGCCGATC
CCCTCCCTTCTGGAGGAGGACCCGCTCCTCCTTCCGGCAGCCGACGTCAA
GGGCAAGGGTGGCCGGCCCAAGAAGGGGCCCAGGAAGAGGGCAAGGGTCC
AGGTCAATGGAGAGTTCCACAACTCGGCACGCCACTGCATGCGTGTGGAA
CGCCTGATGACTTCGGACGGTGCGGGGGCAGGCGCGTCTGGCAGCGGGCT
GTCGCAGACCGGACTGTCGCAGAGTACGCCTGTTGACATTAGCTGACTTT
CAGCCCATTTGCATCATCTGGTACGCAACGCAGCAGGCAATCGATGGGTG
CATTTCTATCGGGTCGTATCATATGAGGCAGGGTTGCTGAGTATTAATCG
AGCAGTACATATACTTCCTCTGTATCATAAGTCTAGGCTGTTAGGTGCGT
GTAATTATTTGCGCATCCATACTGTTTCGATCATCCTATAGTTAGGTTCG
TTCGAAAGATGAAGTCTCAAAGAAGCTCATGCAAAAAAAAAAGCCAATTG
TTTATACTAAAATGAAGTCAAAATATGCCCATTTTGGCCCATTTAACC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig737:42214..44811-

>mRNA_P-littoralis_Contig737.4.2 ID=mRNA_P-littoralis_Contig737.4.2|Name=mRNA_P-littoralis_Contig737.4.2|organism=Pylaiella littoralis U1_48|type=CDS|length=336bp|location=Sequence derived from alignment at P-littoralis_Contig737:42214..44811- (Pylaiella littoralis U1_48)
ATGGCTCCTCCGCTCATGGCTTTCAACCTGGTGGAGAGGATCGCCACCGT
CTTTGCCGAACGGGGCAAGCACCTGGAAGGCTCCGCCCAACTCCTCACCA
AGTTCGCTGCCAAGCACTTTGCCAACGAGAGGCAGAAGTCGCAGGGGATG
CATGTTGTCCGATGCGGTAACGGACTGTTCGTCGTCAAGAAGCACACCGC
GAATGGATGGCGCGGAAACAAAACGAAGATGGTTTTCCCGTCTGAGGGAC
AGGAGGCGAAGATCATCTGCAGCTGCGCATACCCGGCTAGGTGGGGCCTG
CTCTGCCAACACGGGTTCGCTGTCCTGAGAGACTAG
back to top