mRNA_P-littoralis_Contig736.19.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig736.19.1
Unique NamemRNA_P-littoralis_Contig736.19.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig736.19.1 vs. uniprot
Match: A0A6H5L3T1_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3T1_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.800e-10
Identity = 36/86 (41.86%), Postives = 55/86 (63.95%), Query Frame = 1 
Query:  193 GSGAEYFKLLNNKKDHHE--SFRPSAATLASERYPSFDKTRLGRLRPTDDAMGQLAFTFFTFMFPAVVVAFIVKQTNDYFTYCTTT 444
            G G +Y+     ++   E  SF+PS  TL  +  P+FD  +LGR   + D +G+LAFTFF+ MFPA V+  +V++TN+YF +C +T
Sbjct:  442 GDGHQYYDCHRKREGEGEDVSFKPSKKTL--DALPAFDPDKLGRF--SVDELGELAFTFFSIMFPAAVILLLVRKTNEYFNFCRST 523
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BLAST of mRNA_P-littoralis_Contig736.19.1 vs. uniprot
Match: A0A6H5K8V2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8V2_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 3.330e-10
Identity = 36/86 (41.86%), Postives = 54/86 (62.79%), Query Frame = 1 
Query:  193 GSGAEYFKLLNNKKDHHE--SFRPSAATLASERYPSFDKTRLGRLRPTDDAMGQLAFTFFTFMFPAVVVAFIVKQTNDYFTYCTTT 444
            G G +Y+      +   E  SF+PS  TL  +  P+FD  +LGR   + D +G+LAFTFF+ MFPA V+  +V++TN+YF +C +T
Sbjct:  520 GDGHQYYDCHRKSEGEGEDVSFKPSKKTL--DALPAFDPDKLGRF--SVDELGELAFTFFSIMFPAAVILLLVRKTNEYFNFCRST 601
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BLAST of mRNA_P-littoralis_Contig736.19.1 vs. uniprot
Match: A0A6H5JFU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFU5_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 3.000e-9
Identity = 34/86 (39.53%), Postives = 54/86 (62.79%), Query Frame = 1 
Query:  193 GSGAEYFKLLNNKKDHHE--SFRPSAATLASERYPSFDKTRLGRLRPTDDAMGQLAFTFFTFMFPAVVVAFIVKQTNDYFTYCTTT 444
            G G +Y+     ++   E  SF+PS  T+ +   P+FD  +LGR   + D +G+LAFTFF+ MFPA V+  +V++T +YF +C +T
Sbjct:  648 GDGHQYYDCHRKREGEGEDVSFKPSKKTIGA--LPAFDPDKLGRF--SVDELGELAFTFFSIMFPAAVILLLVRKTYEYFNFCRST 729
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig736.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L3T1_9PHAE1.800e-1041.86DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5K8V2_9PHAE3.330e-1041.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFU5_9PHAE3.000e-939.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig736contigP-littoralis_Contig736:104299..107043 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size458
Hectar predicted targeting categoryother localisation
Exons2
Cds size456
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791522.8681476-CDS-P-littoralis_Contig736:104298..1047091680791522.8681476-CDS-P-littoralis_Contig736:104298..104709Pylaiella littoralis U1_48CDSP-littoralis_Contig736 104299..104709 +
1680791522.8813665-CDS-P-littoralis_Contig736:106996..1070411680791522.8813665-CDS-P-littoralis_Contig736:106996..107041Pylaiella littoralis U1_48CDSP-littoralis_Contig736 106997..107041 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig736.19.1prot_P-littoralis_Contig736.19.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig736 104299..107041 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig736.19.1

>prot_P-littoralis_Contig736.19.1 ID=prot_P-littoralis_Contig736.19.1|Name=mRNA_P-littoralis_Contig736.19.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=152bp
DSGSGAGGDSPCSTQERWNGGGDGDDAGAYPSGEGGDGDGEGRSGAGVST
PGSRQGAGGGDVNVGSGAEYFKLLNNKKDHHESFRPSAATLASERYPSFD
KTRLGRLRPTDDAMGQLAFTFFTFMFPAVVVAFIVKQTNDYFTYCTTTPI
DR
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mRNA from alignment at P-littoralis_Contig736:104299..107043+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig736.19.1 ID=mRNA_P-littoralis_Contig736.19.1|Name=mRNA_P-littoralis_Contig736.19.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2745bp|location=Sequence derived from alignment at P-littoralis_Contig736:104299..107043+ (Pylaiella littoralis U1_48)
GACAGTGGGAGTGGGGCCGGTGGCGATAGTCCATGTTCGACACAAGAAAG
ATGGAACGGGGGTGGGGATGGAGATGACGCAGGAGCCTACCCCAGCGGCG
AGGGTGGTGACGGTGATGGGGAGGGGAGAAGCGGAGCCGGCGTTTCAACA
CCCGGAAGCCGGCAAGGAGCCGGAGGTGGCGATGTAAATGTTGGGTCCGG
CGCAGAGTACTTCAAGCTGCTTAACAACAAGAAAGATCATCATGAGTCGT
TCCGACCATCAGCCGCGACCCTCGCGTCGGAGCGCTACCCGAGCTTCGAC
AAGACGAGACTTGGTCGGTTAAGACCCACCGACGACGCCATGGGGCAGCT
GGCATTCACCTTTTTCACCTTCATGTTCCCTGCAGTGGTCGTTGCTTTTA
TCGTGAAGCAGGTGAGACGACATGAAGCATTTCTTCCTTCAATATTTTCC
AAACCTCGGCATGAGGGTTACCTTTAGGCAACAAGACAGACGAGAGGAAT
TTACTTGACAAGTAGGTTCGAGCAGAAGCATTGCTTATATTCCGATTTTG
TGTCGTACAACGCAACAAAAAAGAAAGAATCCATCGCAAATTTGAAAGGA
GTCTGCGCCAAAAGAGTTGTTGCCTGATCGCCGACACAACTAGTCTGCCG
GCTGGCAAAGTAAGAGCTGAGGGTGCCAGATCAGGCGAAGGAACTGTCAC
CGAGAGCAATAAACGATGTGTTTTGTAAACTCTTCTTGACTAACGGCAGC
AGCAGCAGCAGCAGAGAGAGGGAGTGCGTGTTTGTTGGGTGTGTGTCAAA
GCACATCTTTCGCATGTGACACCCACCGCTGCGGCTGCCGTAGAAGAGCT
GACTCATACTTAGGGTCGGTTCTGTCTTGCAGTGCAGCAGTGGGTTTATT
GGGTGCCTTTTGCTCTGTGATTGTGTTGGCTCATCTGTGGCAGTAGCAGC
AGCAGTTGTTGGGTTTGTGTGTGTGTTGCCCTGAATGCAGCAGCAACAAC
AAGAGTGAAAGCGTGGACGGAGCTGGCCGTGGGTTGATCGTTGTCGACGG
TCGTGAGAAAGCAGCCCGGGTATATTTGACCAATCTCAAAACGTGCAGAC
ACGGACGCGCTTGGCACCGCAATAATATTTGTTTTAACGAGCACAGCAGT
GCATTTAAATTACAGGCGATGACATAGGGTAGATTAACCCTTTGAACCCC
CCAATCCCAATTGGGGACAATTTGGGGACACCTGTTTTTTTTTGTGACTT
GGGTCTTGAAGGCGCCTATCTACAGGTATTTTGGGTGTGGTTCCGTGCGC
TCGATGGAATGTTTGTGGATCGACCAATCGTTGGCTGCCTCGGTGCCACA
TTTTGTTTTTTATTATTATTATGGGAGAGCAAGCGCGCCCGACAGCATAG
TAGACACAACGGCGATCATCTTGTATCACCCTTACTTCATGCCGGCAACA
CTCCCTGCTGCATTGCACACAACATGCACACATACGCATGAGACATGATG
CATAGACTATGTTATACCTGGTACTAATGTACCGCTCCTATGAAACGCTG
ATGATGCTGACGTACCGCTGCACTCACATACATACCCTGATTTCTGCAAC
TATTCTTTTTTTTGGTACTCTGCTTCTGCTGCTGCTGCTGTGTGCATGCT
GCAGCAAGCAGCTAGCTGATGATGTGTCGTGCGGTGGGTTGGTGAGGCAC
ACACCACGCGCACGGGGACCGACACTACAAACAGACACATCGCGCCGCGC
ACGTTTGAAAGCTCATAAACTTACCCGGCGATCTCGTACGAGTATCATCA
CATGGGTACCATTACATGCCGACACCCTTGCGTTGATCACATGCAACATG
ATATGTTTGACTTTAGAGGCTAGTGCAGCTGCTGCTTGCTGCTGCTTCTG
ATGAGATGCTGTAGACCCTGAATGAATGTCGCGGAGTGGAACCCTGTGTG
GTTATCGAGCGGGGTACCCTGATCTGCCATGCTAAGTGGCGGTATTGCTG
CGTGCTACCTTCCATACAGCAGTATCCATTTGAAGCAACATCCTTTAGAA
CTAAACAAACAACCTTTGTGTAGTTGACCCCCCCAAAAAAGTTTGGTGTA
GCTTTAGACTGGAATCTGTCCCCATTTTTTTCAGGGCAAATTGGGGACAG
GTTTCTGTGTATAATCAAGTCACACCCCTTTTTTCACCCGGAGAGAGCAG
AGAGTCTCAAAGAGACATCAGTACTTTTTTTTTTTTGAGACTGTCCACCA
TTCGCCAATCATCGGCGCACCGGAATCAGTAAATTTTTGGCTCCATGATT
ATTTTTTCAGACCCCTGGGGGGTCAAAGGGTTAACAACGAACACAAAGTA
TGGCATAGACTCACAAGGCAATGCACCGTTGCAGCTTGCCCGAGGTCATC
AGGCTTGAAATATCGTTTGTTACATACAGGAATTTGAAATACTGTGTTCG
TCGCAGTTACATGGCCTCTCGGGGAAACCCCGAGCGAAAAGTTGGGAAGA
TAAATCGTTCAGCGCAAATAAAATATTTCAACATATTATTCCGAAGTGAC
CCATGTGCGAGGTTGTTCAATGCCCCTTGTTTCCTGACACGTTCGCGTCG
CTTCCTATGTTTAAGATGACCCCATTGCACGGTGGCCTCGCTCTTACTCG
ACTAAAGGCTGACTAGCACTTGCTTCCTTGCGTTTGCCGTCACTTTAGAC
AAACGATTACTTCACATACTGCACGACAACTCCGATCGACCGGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig736:104299..107043+

>mRNA_P-littoralis_Contig736.19.1 ID=mRNA_P-littoralis_Contig736.19.1|Name=mRNA_P-littoralis_Contig736.19.1|organism=Pylaiella littoralis U1_48|type=CDS|length=456bp|location=Sequence derived from alignment at P-littoralis_Contig736:104299..107043+ (Pylaiella littoralis U1_48)
GACAGTGGGAGTGGGGCCGGTGGCGATAGTCCATGTTCGACACAAGAAAG
ATGGAACGGGGGTGGGGATGGAGATGACGCAGGAGCCTACCCCAGCGGCG
AGGGTGGTGACGGTGATGGGGAGGGGAGAAGCGGAGCCGGCGTTTCAACA
CCCGGAAGCCGGCAAGGAGCCGGAGGTGGCGATGTAAATGTTGGGTCCGG
CGCAGAGTACTTCAAGCTGCTTAACAACAAGAAAGATCATCATGAGTCGT
TCCGACCATCAGCCGCGACCCTCGCGTCGGAGCGCTACCCGAGCTTCGAC
AAGACGAGACTTGGTCGGTTAAGACCCACCGACGACGCCATGGGGCAGCT
GGCATTCACCTTTTTCACCTTCATGTTCCCTGCAGTGGTCGTTGCTTTTA
TCGTGAAGCAGACAAACGATTACTTCACATACTGCACGACAACTCCGATC
GACCGG
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