mRNA_P-littoralis_Contig1185.2.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1185.2.1 vs. uniprot
Match: A0A6H5KHL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHL7_9PHAE) HSP 1 Score: 102 bits (255), Expect = 5.290e-25 Identity = 51/108 (47.22%), Postives = 74/108 (68.52%), Query Frame = 1
Query: 136 DDLATIDIDDDLDEGEEPLSLEIPAGYSLESQVPAALTAVLVRRSIVLRRGIGWLQGTITRQAQVRTRHLYDYRVFLERDGSTHSVKLPLAKYSVDGSAGEGSWALLK 459
D+L+ +D DD ++ +E ++EIP G+ +++ PAAL +L++R +++R G+GW G ITRQ+Q RTRHLYDYRV L+ D ST +KL L Y D A GSW LL+
Sbjct: 2 DELSHVDDDDSMESDDEIRAMEIPDGFRIQASTPAALDNLLLQRGLLVRLGMGWFGGLITRQSQERTRHLYDYRVHLDLDQSTRGMKLQLEMYKGDPDAVVGSWILLE 109
BLAST of mRNA_P-littoralis_Contig1185.2.1 vs. uniprot
Match: A0A6H5K2B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B3_9PHAE) HSP 1 Score: 100 bits (250), Expect = 5.620e-23 Identity = 53/108 (49.07%), Postives = 74/108 (68.52%), Query Frame = 1
Query: 136 DDLATIDIDDDLDEGEEPLSLEIPAGYSLESQVPAALTAVLVRRSIVLRRGIGWLQGTITRQAQVRTRHLYDYRVFLERDGSTHSVKLPLAKYSVDGSAGEGSWALLK 459
D+L +D DD ++ E ++EIP G+ +++ PAAL + L++R +++R G+GWL G ITRQ+Q RTRHLYDYRV L+ D ST S+KLPL Y D A SW LL+
Sbjct: 101 DELRLVDDDDSMESDNEIHAMEIPDGFRIQASTPAALDSSLLQRGLLVRLGMGWLGGIITRQSQERTRHLYDYRVHLDLDQSTRSMKLPLEMYR-DPDAVVDSWILLE 207
BLAST of mRNA_P-littoralis_Contig1185.2.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE) HSP 1 Score: 103 bits (256), Expect = 1.720e-22 Identity = 52/110 (47.27%), Postives = 71/110 (64.55%), Query Frame = 1
Query: 130 THDDLATIDIDDDLDEGEEPLSLEIPAGYSLESQVPAALTAVLVRRSIVLRRGIGWLQGTITRQAQVRTRHLYDYRVFLERDGSTHSVKLPLAKYSVDGSAGEGSWALLK 459
+ D L + DD L GEE L ++IP G+ L++ P+AL LV+R ++++ G+GW G I+R+A +R YDYRV L DGST S+KLPL YS D AG GSW LL+
Sbjct: 1858 SEDPLTQLHDDDQLCAGEESLEMDIPDGFQLQASPPSALDQSLVKRGVLVKLGLGWFGGVISRRAHPASRDEYDYRVVLHSDGSTRSMKLPLESYSTDEDAGVGSWVLLE 1967
BLAST of mRNA_P-littoralis_Contig1185.2.1 vs. uniprot
Match: A0A6H5L5J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J8_9PHAE) HSP 1 Score: 98.6 bits (244), Expect = 1.910e-21 Identity = 49/107 (45.79%), Postives = 74/107 (69.16%), Query Frame = 1
Query: 136 DDLATIDIDDDLDEGEEPLSLEIPAGYSLESQVPAALTAVLVRRSIVLRRGIGWLQGTITRQAQVRTRHLYDYRVFLERDGSTHSVKLPLAKYSVDGSAGEGSWALL 456
++L+ +D DD ++ +E ++EIP G+ +++ PAA+ + L++R +++R G+GW G ITR++Q RTRHLYDYRV L+ D ST S+KLPL Y A GSW LL
Sbjct: 247 EELSLVDDDDSMESDDEIHAMEIPDGFCIQACTPAAIDSSLLQRGVLVRLGMGWFGGVITRKSQERTRHLYDYRVHLDLDQSTSSMKLPLEMYRGVPDAVVGSWILL 353
BLAST of mRNA_P-littoralis_Contig1185.2.1 vs. uniprot
Match: A0A6H5JXN2_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN2_9PHAE) HSP 1 Score: 97.4 bits (241), Expect = 1.580e-20 Identity = 48/97 (49.48%), Postives = 67/97 (69.07%), Query Frame = 1
Query: 169 LDEGEEPLSLEIPAGYSLESQVPAALTAVLVRRSIVLRRGIGWLQGTITRQAQVRTRHLYDYRVFLERDGSTHSVKLPLAKYSVDGSAGEGSWALLK 459
++ +E ++EIP G+ +++ PAAL L++R +++R G+GW G ITRQ+Q RTRHLYDYRV L+ D ST S+KLPL Y D A GSW LL+
Sbjct: 543 MESDDEIRAMEIPDGFRIQASTPAALDNSLLQRGLLVRLGMGWFGGVITRQSQERTRHLYDYRVHLDLDRSTRSMKLPLEMYKGDPDAVVGSWILLE 639
BLAST of mRNA_P-littoralis_Contig1185.2.1 vs. uniprot
Match: A0A6H5KUT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUT4_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 2.470e-19 Identity = 43/89 (48.31%), Postives = 64/89 (71.91%), Query Frame = 1
Query: 139 DLATIDIDDDLDEGEEPLSLEIPAGYSLESQVPAALTAVLVRRSIVLRRGIGWLQGTITRQAQVRTRHLYDYRVFLERDGSTHSVKLPL 405
+L+ +D DD ++ +E L++EIP G+ +++ PAAL + +R +++R G+GW ITRQ+Q RTRHLYDYRV L+ D ST S+KLPL
Sbjct: 125 ELSLVDDDDSMESDDEILAMEIPDGFRIQASTPAALDSSSPQRGVLVRLGMGWFGRVITRQSQERTRHLYDYRVHLDLDQSTRSMKLPL 213
BLAST of mRNA_P-littoralis_Contig1185.2.1 vs. uniprot
Match: A0A6H5JT88_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT88_9PHAE) HSP 1 Score: 77.8 bits (190), Expect = 1.090e-13 Identity = 42/111 (37.84%), Postives = 66/111 (59.46%), Query Frame = 1
Query: 130 THDDLATIDIDDDLDEGEEPLSLEIPAGYSLESQVPAALTAVLVRRSIVLRRGIGWLQGTITRQAQVRTRHLYDYRVFLERDGSTHSVKLPLAKYSVD-GSAGEGSWALLK 459
T + +D DDD+ ++ +++E+P G+ L+ P L L++R ++LRRG+GW G I+R +T YDYRV L D ST +VK+P VD +A G+WAL++
Sbjct: 535 TQAQIMMLDSDDDVXXXDDIIAMELPVGFRLQESPPEKLDRALIKRCVILRRGMGWFLGQISRAVPPQT---YDYRVVLAYDQSTITVKIPPDACDVDKANAAVGAWALIE 642
BLAST of mRNA_P-littoralis_Contig1185.2.1 vs. uniprot
Match: A0A6H5JAW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAW0_9PHAE) HSP 1 Score: 68.2 bits (165), Expect = 7.330e-12 Identity = 34/89 (38.20%), Postives = 54/89 (60.67%), Query Frame = 1
Query: 196 LEIPAGYSLESQVPAALTAVLVRRSIVLRRGIGWLQGTITRQAQVRTRHLYDYRVFLER-DGSTHSVKLPLAKYSVDGSAGEGSWALLK 459
++IP G+ L++ P L +V+R ++++ G+ W G I+R++ +R YDYRV L D ST S+K+PL S D A G+W LL+
Sbjct: 1 MDIPDGFRLQASPPPTLDQSIVKRGVLVKLGLYWFGGVISRRSHPASRQEYDYRVILHCCDESTRSMKMPLESCSTDEDAAIGAWVLLE 89
BLAST of mRNA_P-littoralis_Contig1185.2.1 vs. uniprot
Match: A0A6H5KY33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY33_9PHAE) HSP 1 Score: 64.7 bits (156), Expect = 9.230e-11 Identity = 30/77 (38.96%), Postives = 49/77 (63.64%), Query Frame = 1
Query: 136 DDLATIDIDDDLDEGEEPLSLEIPAGYSLESQVPAALTAVLVRRSIVLRRGIGWLQGTITRQAQVRTRHLYDYRVFL 366
D L +D DD+L EE L ++IP G+ L++ P AL +V+R ++++ G+GW G ++R++ +R YDYRV L
Sbjct: 15 DPLTQLDDDDELSPEEETLKMDIPDGFRLQASPPPALDQSIVKRGVLVKLGLGWFGGVLSRRSHPASRQEYDYRVIL 91
BLAST of mRNA_P-littoralis_Contig1185.2.1 vs. uniprot
Match: A0A6H5JXH0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXH0_9PHAE) HSP 1 Score: 69.3 bits (168), Expect = 9.760e-11 Identity = 36/62 (58.06%), Postives = 43/62 (69.35%), Query Frame = 1
Query: 274 VLRRGIGWLQGTITRQAQVRTRHLYDYRVFLERDGSTHSVKLPLAKYSVDGSAGEGSWALLK 459
++R G+G G ITRQ+Q RTRHLYDYRV L+ D ST S+KLPL Y D A GSW LL+
Sbjct: 619 LVRLGMGCFGGVITRQSQKRTRHLYDYRVHLDLDQSTRSMKLPLEMYRGDPDAVVGSWILLE 680 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1185.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1185.2.1 >prot_P-littoralis_Contig1185.2.1 ID=prot_P-littoralis_Contig1185.2.1|Name=mRNA_P-littoralis_Contig1185.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=162bp MDVTPEPLEDVLPVSPAPADEEHPAGSSDEDDDSDGEEGGGGGTHDDLATback to top mRNA from alignment at P-littoralis_Contig1185:2741..3226+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1185.2.1 ID=mRNA_P-littoralis_Contig1185.2.1|Name=mRNA_P-littoralis_Contig1185.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=486bp|location=Sequence derived from alignment at P-littoralis_Contig1185:2741..3226+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1185:2741..3226+ >mRNA_P-littoralis_Contig1185.2.1 ID=mRNA_P-littoralis_Contig1185.2.1|Name=mRNA_P-littoralis_Contig1185.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=486bp|location=Sequence derived from alignment at P-littoralis_Contig1185:2741..3226+ (Pylaiella littoralis U1_48)back to top |