mRNA_P-littoralis_Contig736.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig736.12.1
Unique NamemRNA_P-littoralis_Contig736.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig736.12.1 vs. uniprot
Match: A0A6H5K8V9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8V9_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 2.190e-21
Identity = 44/60 (73.33%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:    1 YSVKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQYRDLKKWTSHRSSTD 180
            YSV SLL RLP TLS++SLSL RKWAR+SWLY+ AY+ GL+GY+Q RDLKKWT+HRS TD
Sbjct:  272 YSVLSLLARLPMTLSTVSLSLCRKWARVSWLYIYAYSHGLEGYLQTRDLKKWTNHRSPTD 331
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BLAST of mRNA_P-littoralis_Contig736.12.1 vs. uniprot
Match: A0A6H5K2M3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M3_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 4.190e-21
Identity = 44/60 (73.33%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:    1 YSVKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQYRDLKKWTSHRSSTD 180
            YSV SLL RLP TLS++SLSL RKWAR+SWLY+ AY+ GL+GY+Q RDLKKWT+HRS TD
Sbjct:  595 YSVLSLLARLPMTLSTVSLSLCRKWARVSWLYIYAYSHGLEGYLQTRDLKKWTNHRSPTD 654
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BLAST of mRNA_P-littoralis_Contig736.12.1 vs. uniprot
Match: A0A6H5L7W4_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7W4_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 4.210e-21
Identity = 44/60 (73.33%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:    1 YSVKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQYRDLKKWTSHRSSTD 180
            YSV SLL RLP TLS++SLSL RKWAR+SWLY+ AY+ GL+GY+Q RDLKKWT+HRS TD
Sbjct: 1043 YSVLSLLARLPMTLSTVSLSLCRKWARVSWLYIYAYSHGLEGYLQTRDLKKWTNHRSPTD 1102
[Close]
BLAST of mRNA_P-littoralis_Contig736.12.1 vs. uniprot
Match: A0A6H5K7K1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7K1_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 8.970e-21
Identity = 43/60 (71.67%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:    1 YSVKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQYRDLKKWTSHRSSTD 180
            YSV SLL RLP TLS+++LSL RKWAR+SWLY+ AY+ GL+GY+Q RDLKKWT+HRS TD
Sbjct:  402 YSVLSLLARLPMTLSTVTLSLCRKWARVSWLYIYAYSHGLEGYLQTRDLKKWTNHRSPTD 461
[Close]
BLAST of mRNA_P-littoralis_Contig736.12.1 vs. uniprot
Match: A0A6H5JJ42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ42_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.810e-14
Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    1 YSVKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQYRDLKKWTSHRSSTDR 183
            YS+K +LK LP  LS + L  +R W+R++WLY+EAY  GL  Y++ RDLKKW SHRS T+R
Sbjct: 1234 YSLKHMLKILPGALSGVPLRFMRGWSRVTWLYLEAYDEGLVDYLEVRDLKKWLSHRSPTER 1294
[Close]
BLAST of mRNA_P-littoralis_Contig736.12.1 vs. uniprot
Match: A0A6H5K4S4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4S4_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.090e-13
Identity = 32/61 (52.46%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:    1 YSVKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQYRDLKKWTSHRSSTDR 183
            YS+  +L+ LP  LS + L  +R W+R++WLY+EAY  GL  Y++ RDLKKW SHRS T+R
Sbjct:  185 YSLPHMLEILPGALSGVPLGFVRGWSRVTWLYLEAYDEGLVDYLEVRDLKKWLSHRSPTER 245
[Close]
BLAST of mRNA_P-littoralis_Contig736.12.1 vs. uniprot
Match: A0A6H5JT56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT56_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.590e-13
Identity = 32/61 (52.46%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:    1 YSVKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQYRDLKKWTSHRSSTDR 183
            YS+  +L+ LP  LS + L  +R W+R++WLY+EAY  GL  Y++ RDLKKW SHRS T+R
Sbjct:  392 YSLPHMLEILPGALSGVPLGFVRGWSRVTWLYLEAYDEGLVDYLEVRDLKKWLSHRSPTER 452
[Close]
BLAST of mRNA_P-littoralis_Contig736.12.1 vs. uniprot
Match: A0A6H5K659_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K659_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.610e-13
Identity = 32/61 (52.46%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:    1 YSVKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQYRDLKKWTSHRSSTDR 183
            YS+  +L+ LP  LS + L  +R W+R++WLY+EAY  GL  Y++ RDLKKW SHRS T+R
Sbjct:  825 YSLPHMLEILPGALSGVPLGFVRGWSRVTWLYLEAYDEGLVDYLEVRDLKKWLSHRSPTER 885
[Close]
BLAST of mRNA_P-littoralis_Contig736.12.1 vs. uniprot
Match: A0A6H5KDG4_9PHAE (Uncharacterized protein n=6 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDG4_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.610e-13
Identity = 32/61 (52.46%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:    1 YSVKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQYRDLKKWTSHRSSTDR 183
            YS+  +L+ LP  LS + L  +R W+R++WLY+EAY  GL  Y++ RDLKKW SHRS T+R
Sbjct: 1204 YSLPHMLEILPGALSGVPLGFVRGWSRVTWLYLEAYDEGLVDYLEVRDLKKWLSHRSPTER 1264
[Close]
BLAST of mRNA_P-littoralis_Contig736.12.1 vs. uniprot
Match: A0A6H5K344_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K344_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 2.280e-8
Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 YSVKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATG 117
            YSV SLL RLP TLS++SLSL RKWAR+SWLY+ AY+ G
Sbjct:  478 YSVLSLLARLPMTLSTVSLSLCRKWARVSWLYIYAYSHG 516
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig736.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5K8V9_9PHAE2.190e-2173.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2M3_9PHAE4.190e-2173.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7W4_9PHAE4.210e-2173.33Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7K1_9PHAE8.970e-2171.67Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JJ42_9PHAE1.810e-1455.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4S4_9PHAE1.090e-1352.46Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT56_9PHAE1.590e-1352.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K659_9PHAE1.610e-1352.46Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDG4_9PHAE1.610e-1352.46Uncharacterized protein n=6 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K344_9PHAE2.280e-871.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig736contigP-littoralis_Contig736:63942..64124 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog588596.U9TZ29
Model size183
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000154
EggNOG OGs29JY0@1|root,2RT6R@2759|Eukaryota,39VBJ@33154|Opisthokonta,3P12S@4751|Fungi
Cds size183
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791522.7467742-CDS-P-littoralis_Contig736:63941..641241680791522.7467742-CDS-P-littoralis_Contig736:63941..64124Pylaiella littoralis U1_48CDSP-littoralis_Contig736 63942..64124 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig736.12.1prot_P-littoralis_Contig736.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig736 63942..64124 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig736.12.1

>prot_P-littoralis_Contig736.12.1 ID=prot_P-littoralis_Contig736.12.1|Name=mRNA_P-littoralis_Contig736.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=61bp
YSVKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQYRDLK
KWTSHRSSTDR
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mRNA from alignment at P-littoralis_Contig736:63942..64124+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig736.12.1 ID=mRNA_P-littoralis_Contig736.12.1|Name=mRNA_P-littoralis_Contig736.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=183bp|location=Sequence derived from alignment at P-littoralis_Contig736:63942..64124+ (Pylaiella littoralis U1_48)
TATTCCGTCAAGAGTCTTCTAAAACGACTCCCTGCCACCCTTAGCTCCAT
GTCTCTGTCGCTCATTCGCAAGTGGGCCCGGATTTCGTGGCTCTATGTTG
AGGCGTATGCCACGGGGCTCGACGGTTACATGCAATACAGAGACCTAAAG
AAGTGGACGAGCCACCGCTCATCTACTGATCGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig736:63942..64124+

>mRNA_P-littoralis_Contig736.12.1 ID=mRNA_P-littoralis_Contig736.12.1|Name=mRNA_P-littoralis_Contig736.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=183bp|location=Sequence derived from alignment at P-littoralis_Contig736:63942..64124+ (Pylaiella littoralis U1_48)
TATTCCGTCAAGAGTCTTCTAAAACGACTCCCTGCCACCCTTAGCTCCAT
GTCTCTGTCGCTCATTCGCAAGTGGGCCCGGATTTCGTGGCTCTATGTTG
AGGCGTATGCCACGGGGCTCGACGGTTACATGCAATACAGAGACCTAAAG
AAGTGGACGAGCCACCGCTCATCTACTGATCGG
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