mRNA_P-littoralis_Contig1185.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1185.2.1
Unique NamemRNA_P-littoralis_Contig1185.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1185.2.1 vs. uniprot
Match: A0A6H5KHL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHL7_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 5.290e-25
Identity = 51/108 (47.22%), Postives = 74/108 (68.52%), Query Frame = 1
Query:  136 DDLATIDIDDDLDEGEEPLSLEIPAGYSLESQVPAALTAVLVRRSIVLRRGIGWLQGTITRQAQVRTRHLYDYRVFLERDGSTHSVKLPLAKYSVDGSAGEGSWALLK 459
            D+L+ +D DD ++  +E  ++EIP G+ +++  PAAL  +L++R +++R G+GW  G ITRQ+Q RTRHLYDYRV L+ D ST  +KL L  Y  D  A  GSW LL+
Sbjct:    2 DELSHVDDDDSMESDDEIRAMEIPDGFRIQASTPAALDNLLLQRGLLVRLGMGWFGGLITRQSQERTRHLYDYRVHLDLDQSTRGMKLQLEMYKGDPDAVVGSWILLE 109          
BLAST of mRNA_P-littoralis_Contig1185.2.1 vs. uniprot
Match: A0A6H5K2B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B3_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 5.620e-23
Identity = 53/108 (49.07%), Postives = 74/108 (68.52%), Query Frame = 1
Query:  136 DDLATIDIDDDLDEGEEPLSLEIPAGYSLESQVPAALTAVLVRRSIVLRRGIGWLQGTITRQAQVRTRHLYDYRVFLERDGSTHSVKLPLAKYSVDGSAGEGSWALLK 459
            D+L  +D DD ++   E  ++EIP G+ +++  PAAL + L++R +++R G+GWL G ITRQ+Q RTRHLYDYRV L+ D ST S+KLPL  Y  D  A   SW LL+
Sbjct:  101 DELRLVDDDDSMESDNEIHAMEIPDGFRIQASTPAALDSSLLQRGLLVRLGMGWLGGIITRQSQERTRHLYDYRVHLDLDQSTRSMKLPLEMYR-DPDAVVDSWILLE 207          
BLAST of mRNA_P-littoralis_Contig1185.2.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 1.720e-22
Identity = 52/110 (47.27%), Postives = 71/110 (64.55%), Query Frame = 1
Query:  130 THDDLATIDIDDDLDEGEEPLSLEIPAGYSLESQVPAALTAVLVRRSIVLRRGIGWLQGTITRQAQVRTRHLYDYRVFLERDGSTHSVKLPLAKYSVDGSAGEGSWALLK 459
            + D L  +  DD L  GEE L ++IP G+ L++  P+AL   LV+R ++++ G+GW  G I+R+A   +R  YDYRV L  DGST S+KLPL  YS D  AG GSW LL+
Sbjct: 1858 SEDPLTQLHDDDQLCAGEESLEMDIPDGFQLQASPPSALDQSLVKRGVLVKLGLGWFGGVISRRAHPASRDEYDYRVVLHSDGSTRSMKLPLESYSTDEDAGVGSWVLLE 1967          
BLAST of mRNA_P-littoralis_Contig1185.2.1 vs. uniprot
Match: A0A6H5L5J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J8_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 1.910e-21
Identity = 49/107 (45.79%), Postives = 74/107 (69.16%), Query Frame = 1
Query:  136 DDLATIDIDDDLDEGEEPLSLEIPAGYSLESQVPAALTAVLVRRSIVLRRGIGWLQGTITRQAQVRTRHLYDYRVFLERDGSTHSVKLPLAKYSVDGSAGEGSWALL 456
            ++L+ +D DD ++  +E  ++EIP G+ +++  PAA+ + L++R +++R G+GW  G ITR++Q RTRHLYDYRV L+ D ST S+KLPL  Y     A  GSW LL
Sbjct:  247 EELSLVDDDDSMESDDEIHAMEIPDGFCIQACTPAAIDSSLLQRGVLVRLGMGWFGGVITRKSQERTRHLYDYRVHLDLDQSTSSMKLPLEMYRGVPDAVVGSWILL 353          
BLAST of mRNA_P-littoralis_Contig1185.2.1 vs. uniprot
Match: A0A6H5JXN2_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN2_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 1.580e-20
Identity = 48/97 (49.48%), Postives = 67/97 (69.07%), Query Frame = 1
Query:  169 LDEGEEPLSLEIPAGYSLESQVPAALTAVLVRRSIVLRRGIGWLQGTITRQAQVRTRHLYDYRVFLERDGSTHSVKLPLAKYSVDGSAGEGSWALLK 459
            ++  +E  ++EIP G+ +++  PAAL   L++R +++R G+GW  G ITRQ+Q RTRHLYDYRV L+ D ST S+KLPL  Y  D  A  GSW LL+
Sbjct:  543 MESDDEIRAMEIPDGFRIQASTPAALDNSLLQRGLLVRLGMGWFGGVITRQSQERTRHLYDYRVHLDLDRSTRSMKLPLEMYKGDPDAVVGSWILLE 639          
BLAST of mRNA_P-littoralis_Contig1185.2.1 vs. uniprot
Match: A0A6H5KUT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUT4_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 2.470e-19
Identity = 43/89 (48.31%), Postives = 64/89 (71.91%), Query Frame = 1
Query:  139 DLATIDIDDDLDEGEEPLSLEIPAGYSLESQVPAALTAVLVRRSIVLRRGIGWLQGTITRQAQVRTRHLYDYRVFLERDGSTHSVKLPL 405
            +L+ +D DD ++  +E L++EIP G+ +++  PAAL +   +R +++R G+GW    ITRQ+Q RTRHLYDYRV L+ D ST S+KLPL
Sbjct:  125 ELSLVDDDDSMESDDEILAMEIPDGFRIQASTPAALDSSSPQRGVLVRLGMGWFGRVITRQSQERTRHLYDYRVHLDLDQSTRSMKLPL 213          
BLAST of mRNA_P-littoralis_Contig1185.2.1 vs. uniprot
Match: A0A6H5JT88_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT88_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.090e-13
Identity = 42/111 (37.84%), Postives = 66/111 (59.46%), Query Frame = 1
Query:  130 THDDLATIDIDDDLDEGEEPLSLEIPAGYSLESQVPAALTAVLVRRSIVLRRGIGWLQGTITRQAQVRTRHLYDYRVFLERDGSTHSVKLPLAKYSVD-GSAGEGSWALLK 459
            T   +  +D DDD+   ++ +++E+P G+ L+   P  L   L++R ++LRRG+GW  G I+R    +T   YDYRV L  D ST +VK+P     VD  +A  G+WAL++
Sbjct:  535 TQAQIMMLDSDDDVXXXDDIIAMELPVGFRLQESPPEKLDRALIKRCVILRRGMGWFLGQISRAVPPQT---YDYRVVLAYDQSTITVKIPPDACDVDKANAAVGAWALIE 642          
BLAST of mRNA_P-littoralis_Contig1185.2.1 vs. uniprot
Match: A0A6H5JAW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAW0_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 7.330e-12
Identity = 34/89 (38.20%), Postives = 54/89 (60.67%), Query Frame = 1
Query:  196 LEIPAGYSLESQVPAALTAVLVRRSIVLRRGIGWLQGTITRQAQVRTRHLYDYRVFLER-DGSTHSVKLPLAKYSVDGSAGEGSWALLK 459
            ++IP G+ L++  P  L   +V+R ++++ G+ W  G I+R++   +R  YDYRV L   D ST S+K+PL   S D  A  G+W LL+
Sbjct:    1 MDIPDGFRLQASPPPTLDQSIVKRGVLVKLGLYWFGGVISRRSHPASRQEYDYRVILHCCDESTRSMKMPLESCSTDEDAAIGAWVLLE 89          
BLAST of mRNA_P-littoralis_Contig1185.2.1 vs. uniprot
Match: A0A6H5KY33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY33_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 9.230e-11
Identity = 30/77 (38.96%), Postives = 49/77 (63.64%), Query Frame = 1
Query:  136 DDLATIDIDDDLDEGEEPLSLEIPAGYSLESQVPAALTAVLVRRSIVLRRGIGWLQGTITRQAQVRTRHLYDYRVFL 366
            D L  +D DD+L   EE L ++IP G+ L++  P AL   +V+R ++++ G+GW  G ++R++   +R  YDYRV L
Sbjct:   15 DPLTQLDDDDELSPEEETLKMDIPDGFRLQASPPPALDQSIVKRGVLVKLGLGWFGGVLSRRSHPASRQEYDYRVIL 91          
BLAST of mRNA_P-littoralis_Contig1185.2.1 vs. uniprot
Match: A0A6H5JXH0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXH0_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 9.760e-11
Identity = 36/62 (58.06%), Postives = 43/62 (69.35%), Query Frame = 1
Query:  274 VLRRGIGWLQGTITRQAQVRTRHLYDYRVFLERDGSTHSVKLPLAKYSVDGSAGEGSWALLK 459
            ++R G+G   G ITRQ+Q RTRHLYDYRV L+ D ST S+KLPL  Y  D  A  GSW LL+
Sbjct:  619 LVRLGMGCFGGVITRQSQKRTRHLYDYRVHLDLDQSTRSMKLPLEMYRGDPDAVVGSWILLE 680          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1185.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5KHL7_9PHAE5.290e-2547.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2B3_9PHAE5.620e-2349.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH58_9PHAE1.720e-2247.27Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L5J8_9PHAE1.910e-2145.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXN2_9PHAE1.580e-2049.48C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KUT4_9PHAE2.470e-1948.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT88_9PHAE1.090e-1337.84HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5JAW0_9PHAE7.330e-1238.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY33_9PHAE9.230e-1138.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXH0_9PHAE9.760e-1158.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1185contigP-littoralis_Contig1185:2741..3226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FI08
PFAMsDDE_1
Model size487
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.11e-19
EggNOG OGs2DCSR@1|root,2S5KN@2759|Eukaryota
Cds size486
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789497.65752-CDS-P-littoralis_Contig1185:2740..32261680789497.65752-CDS-P-littoralis_Contig1185:2740..3226Pylaiella littoralis U1_48CDSP-littoralis_Contig1185 2741..3226 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1185.2.1prot_P-littoralis_Contig1185.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1185 2741..3226 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1185.2.1

>prot_P-littoralis_Contig1185.2.1 ID=prot_P-littoralis_Contig1185.2.1|Name=mRNA_P-littoralis_Contig1185.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=162bp
MDVTPEPLEDVLPVSPAPADEEHPAGSSDEDDDSDGEEGGGGGTHDDLAT
IDIDDDLDEGEEPLSLEIPAGYSLESQVPAALTAVLVRRSIVLRRGIGWL
QGTITRQAQVRTRHLYDYRVFLERDGSTHSVKLPLAKYSVDGSAGEGSWA
LLKCPASTAESD
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mRNA from alignment at P-littoralis_Contig1185:2741..3226+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1185.2.1 ID=mRNA_P-littoralis_Contig1185.2.1|Name=mRNA_P-littoralis_Contig1185.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=486bp|location=Sequence derived from alignment at P-littoralis_Contig1185:2741..3226+ (Pylaiella littoralis U1_48)
ATGGACGTCACCCCGGAGCCGCTGGAGGATGTGCTTCCGGTGTCACCTGC TCCTGCCGACGAGGAACACCCTGCCGGTTCAAGCGATGAGGACGACGATT CGGATGGGGAGGAGGGGGGTGGAGGCGGTACGCACGACGACCTGGCGACG ATAGACATCGACGATGATCTCGACGAAGGCGAGGAGCCCTTGTCTCTCGA GATCCCAGCAGGATATTCCCTGGAGAGCCAAGTGCCTGCCGCGCTCACCG CAGTACTAGTCAGGCGATCAATAGTGCTGCGGAGGGGTATCGGGTGGCTC CAGGGGACCATCACAAGACAGGCTCAAGTGCGCACGCGTCACCTCTACGA CTACAGAGTGTTTTTGGAGCGCGACGGCAGCACACACAGCGTGAAGCTAC CATTGGCGAAGTACTCGGTGGACGGGTCGGCGGGCGAGGGATCATGGGCG CTTCTGAAGTGCCCTGCTTCCACCGCAGAGTCCGAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1185:2741..3226+

>mRNA_P-littoralis_Contig1185.2.1 ID=mRNA_P-littoralis_Contig1185.2.1|Name=mRNA_P-littoralis_Contig1185.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=486bp|location=Sequence derived from alignment at P-littoralis_Contig1185:2741..3226+ (Pylaiella littoralis U1_48)
ATGGACGTCACCCCGGAGCCGCTGGAGGATGTGCTTCCGGTGTCACCTGC
TCCTGCCGACGAGGAACACCCTGCCGGTTCAAGCGATGAGGACGACGATT
CGGATGGGGAGGAGGGGGGTGGAGGCGGTACGCACGACGACCTGGCGACG
ATAGACATCGACGATGATCTCGACGAAGGCGAGGAGCCCTTGTCTCTCGA
GATCCCAGCAGGATATTCCCTGGAGAGCCAAGTGCCTGCCGCGCTCACCG
CAGTACTAGTCAGGCGATCAATAGTGCTGCGGAGGGGTATCGGGTGGCTC
CAGGGGACCATCACAAGACAGGCTCAAGTGCGCACGCGTCACCTCTACGA
CTACAGAGTGTTTTTGGAGCGCGACGGCAGCACACACAGCGTGAAGCTAC
CATTGGCGAAGTACTCGGTGGACGGGTCGGCGGGCGAGGGATCATGGGCG
CTTCTGAAGTGCCCTGCTTCCACCGCAGAGTCCGAT
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