mRNA_P-littoralis_Contig735.44.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig735.44.1
Unique NamemRNA_P-littoralis_Contig735.44.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig735.44.1 vs. uniprot
Match: A0A6H5JHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE)

HSP 1 Score: 242 bits (617), Expect = 4.400e-74
Identity = 137/190 (72.11%), Postives = 145/190 (76.32%), Query Frame = 3
Query:  282 GVRLPSAAETGKGQHGYACLRQYGPRYS--------------PETYDEFVY-------TTNLGSFHAPRFARLLLEAGADATLASRFPYDSDEGEEDEGFIGTPLDLATSYVRRFSPMRVHREMVQGLKGVIRLLRQEEAVHAVSWTWPIDTGRSVERASRKKSTSIARMLPLLKKRAAKSRVLLAAMSR 788
            GV L +A E       Y  LR+ G   +              PETYD+FV+       T NLGSFHAPRFARLLLEAGADAT   RFP DSDEGEEDE FIGTPL+LATSY RRFSPMRVHREMV+GLKGVIRLLRQEEAVHAVSWTWPIDTGRSVERASRKKSTSIARMLPLLK+RAAK RVLLAAMSR
Sbjct:  222 GVALCAAIEGCSEACVYLLLRRQGGNINVSTRAYVNMAHGTLPETYDDFVFQETPLVSTFNLGSFHAPRFARLLLEAGADATSGVRFPCDSDEGEEDEDFIGTPLELATSYFRRFSPMRVHREMVRGLKGVIRLLRQEEAVHAVSWTWPIDTGRSVERASRKKSTSIARMLPLLKRRAAKPRVLLAAMSR 411          
BLAST of mRNA_P-littoralis_Contig735.44.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE)

HSP 1 Score: 248 bits (632), Expect = 4.180e-73
Identity = 140/190 (73.68%), Postives = 147/190 (77.37%), Query Frame = 3
Query:  282 GVRLPSAAETGKGQHGYACLRQYGPRYS--------------PETYDEFVY-------TTNLGSFHAPRFARLLLEAGADATLASRFPYDSDEGEEDEGFIGTPLDLATSYVRRFSPMRVHREMVQGLKGVIRLLRQEEAVHAVSWTWPIDTGRSVERASRKKSTSIARMLPLLKKRAAKSRVLLAAMSR 788
            GV L +A E       Y  LR+ G + S              PETYDEFV+       T NLGSFHAPRFARLLLEAGADAT   RFP DSDEGEEDEGFIGTPLDLATSY RRFSPMRVHREMV+GLKGVIRLLRQEEAVH+VSWTWPIDTGRSVERASRKKSTSIARMLPLLK+RAAK RVLLAAMSR
Sbjct:  612 GVALCAAIEGCSEACVYLLLRRQGRKASTDSRAYVNMDHGSLPETYDEFVFQEPPLVSTFNLGSFHAPRFARLLLEAGADATSGVRFPCDSDEGEEDEGFIGTPLDLATSYFRRFSPMRVHREMVRGLKGVIRLLRQEEAVHSVSWTWPIDTGRSVERASRKKSTSIARMLPLLKRRAAKPRVLLAAMSR 801          
BLAST of mRNA_P-littoralis_Contig735.44.1 vs. uniprot
Match: A0A6H5L5L0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE)

HSP 1 Score: 227 bits (578), Expect = 5.330e-68
Identity = 122/148 (82.43%), Postives = 127/148 (85.81%), Query Frame = 3
Query:  366 PETYDEFVY-------TTNLGSFHAPRFARLLLEAGADATLASRFPYDSDEGEEDEGFIGTPLDLATSYVRRFSPMRVHREMVQGLKGVIRLLRQEEAVHAVSWTWPIDTGRSVERASRKKSTSIARMLPLLKKRAAKSRVLLAAMSR 788
            PETYDEFV+       T NLGSFHAP FARLLLEAGADAT   RFP DSDEGEEDEGFIGTPLDLATSY RRFS M VHREMV  LKGVIRLLRQEEAVH+VSWTWPID GRSVERASRKK TSIARM+PLLK+RAAK RVLLAA+SR
Sbjct:  318 PETYDEFVFQETPLVSTFNLGSFHAPGFARLLLEAGADATSGVRFPCDSDEGEEDEGFIGTPLDLATSYFRRFSSMSVHREMVPELKGVIRLLRQEEAVHSVSWTWPIDNGRSVERASRKKPTSIARMVPLLKRRAAKPRVLLAALSR 465          
BLAST of mRNA_P-littoralis_Contig735.44.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE)

HSP 1 Score: 233 bits (595), Expect = 1.310e-67
Identity = 132/190 (69.47%), Postives = 143/190 (75.26%), Query Frame = 3
Query:  282 GVRLPSAAETGKGQHGYACLRQYGPRYS--------------PETYDEFVY-------TTNLGSFHAPRFARLLLEAGADATLASRFPYDSDEGEEDEGFIGTPLDLATSYVRRFSPMRVHREMVQGLKGVIRLLRQEEAVHAVSWTWPIDTGRSVERASRKKSTSIARMLPLLKKRAAKSRVLLAAMSR 788
            GV L +A E       Y  LR+ G   +              PETY+EFV+       T NLGSFHAPRFARLLLEAGADAT   RFP DSDEGEEDEGFIGTPLDLATSYVRRFS M+VHREMV+GLKGVIRLL+QEEAVH+VSWTWPIDTGRS ER SRKKSTSIARM+PLLK+RAA  RVLLAAMSR
Sbjct:  643 GVALCAAIEGCSEACVYLLLRRQGGNANTGTRAYVNMDHGTLPETYEEFVFQETPLVSTFNLGSFHAPRFARLLLEAGADATSGVRFPCDSDEGEEDEGFIGTPLDLATSYVRRFSTMKVHREMVRGLKGVIRLLQQEEAVHSVSWTWPIDTGRSAERVSRKKSTSIARMVPLLKRRAATLRVLLAAMSR 832          
BLAST of mRNA_P-littoralis_Contig735.44.1 vs. uniprot
Match: A0A6H5JNS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 8.010e-28
Identity = 73/144 (50.69%), Postives = 89/144 (61.81%), Query Frame = 1
Query:    7 GVKILLRAYANPLLSAYG--SLPLYMAVYDGHQKVVRELVHWYGTDHCTSDGGALALATAASRKHVDIVTFLCDAGVVDTEGVALCAVIEGCSEACVYLLLRRRG-KANTGTRAYVNMDHGTLPKPMTNSCTQPIWEAFMLPDS 429
            GVK  + A ANP+L+AY   SLPL +A  +G   VVREL   +G D C+ DGGA AL  AAS+  VDIVTFL D GVVD EG+ALCA +EG  E C+ LLLR +G  AN   RAY NM H T         T P++   + PD+
Sbjct:  126 GVKGFVGAKANPILAAYDGESLPLDVAAENGQLGVVRELEQRFGIDGCSCDGGAQALVEAASQNQVDIVTFLFDNGVVDAEGIALCAAVEGRREECIELLLRTQGCNANAIARAYANMTHDT---------TLPMYSNQLFPDT 260          
BLAST of mRNA_P-littoralis_Contig735.44.1 vs. uniprot
Match: D8LP44_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP44_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 1.050e-21
Identity = 59/119 (49.58%), Postives = 75/119 (63.03%), Query Frame = 1
Query:    1 MEGVKILLRAYANPLLSAYGSLPLYMAVYDGHQKVVRELVHWYGTDHCTSDGGALALATAASRKHVDIVTFLCDAGVVDTEGVALCAVIEGCSEACVYLLLRRRG-KANTGTRAYVNMD 354
            ++ VKILL+  ANP+L    + PL +A + GH  VV+ELV  +G D C+ +G   AL TAA   H  I+TFL DAGV DT+G ALC  IEG SEAC+ LL+ RRG  A+     Y N D
Sbjct:  160 LDAVKILLQERANPMLCVGPTHPLDIATHGGHLGVVQELVQRFGVDGCSDEGAIGALETAAYENHQTILTFLLDAGVKDTDGTALCDAIEGRSEACLKLLVGRRGGNAHMAESHYTNTD 278          
BLAST of mRNA_P-littoralis_Contig735.44.1 vs. uniprot
Match: A0A6H5KSL5_9PHAE (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6H5KSL5_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 2.130e-21
Identity = 58/120 (48.33%), Postives = 77/120 (64.17%), Query Frame = 1
Query:    1 MEGVKILLRAYANPLLSAYGSLPLYMAVYDGHQKVVRELVHWYGTDHCTSDGGALALATAASRKHVDIVTFLCDAGVVDTEGVALCAVIEGCSEACVYLLLRRRGKA-NTGTRAYVNMDH 357
            +E V+IL +  ANPLL    + PL +A + GH  VV+ELV  +G D C  +G   AL TAA   H  I+TFL DAGV+DT+G ALC  IEG +EAC+ LL+ RRG + +   R Y N+D+
Sbjct:  173 LEAVEILFQKKANPLLRVGPTHPLDIATHGGHLGVVQELVQRFGIDGCADEGAIGALETAAYENHEAIMTFLLDAGVIDTDGTALCDAIEGRNEACLKLLVSRRGGSEHMVERNYTNIDN 292          
BLAST of mRNA_P-littoralis_Contig735.44.1 vs. uniprot
Match: D8LH66_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH66_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 5.190e-12
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 3
Query:  117 RALVRNRPLYKRRRRTSSRNGRFSQTRGHRHLPVRCRCG 233
            R LVRNR LYKRRRRT SRNGRFSQ+RGHRHLPVRCRCG
Sbjct:  165 RPLVRNRSLYKRRRRTGSRNGRFSQSRGHRHLPVRCRCG 203          
BLAST of mRNA_P-littoralis_Contig735.44.1 vs. uniprot
Match: D7FXY7_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY7_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 1.030e-6
Identity = 38/87 (43.68%), Postives = 52/87 (59.77%), Query Frame = 1
Query:    1 MEGVKILLRAYANPLLSAY------GSLPLYMAVYDGHQKVVRELVHWYGTDHCT-SDGGALALATAASRKHVDIVTFLCDAGVVDT 240
            ++ V++LL A  +PLL+ +       SLPL +A   GH +VV EL+   G   C  S GG  AL  AA  KH+D++T L +AGVVDT
Sbjct:   63 VDAVRLLLLAKVDPLLTPHLGTSERASLPLDVAAGLGHLEVVNELIRQVGIGGCGGSSGGVRALQQAARNKHLDMLTVLTNAGVVDT 149          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig735.44.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5JHQ8_9PHAE4.400e-7472.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1W5_9PHAE4.180e-7373.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5L0_9PHAE5.330e-6882.43Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JL58_9PHAE1.310e-6769.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNS0_9PHAE8.010e-2850.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LP44_ECTSI1.050e-2149.58EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5KSL5_9PHAE2.130e-2148.33Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
D8LH66_ECTSI5.190e-1289.74EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FXY7_ECTSI1.030e-643.68EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig735contigP-littoralis_Contig735:135861..136648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog654926.Q8QNQ8_ESV1K
Model size788
Max annot lvl10239|Viruses
Hectar predicted targeting categoryother localisation
GOsGO:0008150,GO:0010941,GO:0016032,GO:0019048,GO:0019050,GO:0019054,GO:0033668,GO:0035821,GO:0039526,GO:0042981,GO:0043067,GO:0043069,GO:0044003,GO:0044068,GO:0044403,GO:0044419,GO:0044531,GO:0044532,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051701,GO:0051704,GO:0051817,GO:0052040,GO:0052041,GO:0052150,GO:0052248,GO:0052433,GO:0052490,GO:0060548,GO:0065007
Exons1
Evalue2.52e-24
EggNOG OGs4QB1T@10239|Viruses,4QUVA@35237|dsDNA viruses no RNA stage
Descriptionaspartic-type endopeptidase activity
Cds size534
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791522.4942508-CDS-P-littoralis_Contig735:135860..1363941680791522.4942508-CDS-P-littoralis_Contig735:135860..136394Pylaiella littoralis U1_48CDSP-littoralis_Contig735 135861..136394 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791522.5083916-UTR-P-littoralis_Contig735:136394..1366481680791522.5083916-UTR-P-littoralis_Contig735:136394..136648Pylaiella littoralis U1_48UTRP-littoralis_Contig735 136395..136648 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig735.44.1prot_P-littoralis_Contig735.44.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig735 135861..136394 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig735.44.1

>prot_P-littoralis_Contig735.44.1 ID=prot_P-littoralis_Contig735.44.1|Name=mRNA_P-littoralis_Contig735.44.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=178bp
MEGVKILLRAYANPLLSAYGSLPLYMAVYDGHQKVVRELVHWYGTDHCTS
DGGALALATAASRKHVDIVTFLCDAGVVDTEGVALCAVIEGCSEACVYLL
LRRRGKANTGTRAYVNMDHGTLPKPMTNSCTQPIWEAFMLPDSRACYSKP
GRTRHWPVGFRTTVMRGKKTKVSSARP*
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mRNA from alignment at P-littoralis_Contig735:135861..136648+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig735.44.1 ID=mRNA_P-littoralis_Contig735.44.1|Name=mRNA_P-littoralis_Contig735.44.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=788bp|location=Sequence derived from alignment at P-littoralis_Contig735:135861..136648+ (Pylaiella littoralis U1_48)
ATGGAAGGGGTGAAAATTCTCCTTCGGGCGTACGCGAATCCGCTCTTGTC AGCGTACGGAAGTCTCCCGTTATATATGGCGGTCTACGATGGACATCAGA AAGTGGTCCGCGAGCTCGTGCATTGGTACGGAACCGACCACTGTACAAGC GACGGCGGCGCACTAGCTCTCGCAACGGCCGCTTCTCGCAAACACGTGGA CATCGTCACCTTCCTGTGCGATGCCGGTGTGGTTGATACGGAGGGCGTGG CCCTGTGTGCTGTCATTGAGGGCTGTAGCGAGGCGTGCGTCTACCTTCTG CTGCGGAGACGGGGAAAGGCCAACACGGGTACGCGTGCCTACGTCAATAT GGACCACGGTACTCTCCCGAAACCTATGACGAATTCGTGTACACAACCAA TCTGGGAAGCTTTCATGCTCCCAGATTCGCGCGCTTGCTACTCGAAGCCG GGGCGGACGCGACATTGGCCAGTCGGTTTCCGTACGACAGTGATGAGGGG GAAGAAGACGAAGGTTTCATCGGCACGCCCCTAGACTTGGCCACATCTTA TGTTCGCAGATTCAGTCCAATGAGAGTCCACCGCGAGATGGTGCAGGGGC TGAAGGGTGTCATCCGCCTGCTGCGACAGGAGGAGGCAGTTCACGCGGTG TCCTGGACGTGGCCAATCGACACCGGTCGTTCTGTAGAGCGTGCGTCCCG GAAGAAATCAACATCGATCGCTCGCATGCTCCCGCTTCTGAAGAAGAGGG CGGCGAAGTCTCGTGTGCTCTTGGCAGCCATGTCTAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig735:135861..136648+

>mRNA_P-littoralis_Contig735.44.1 ID=mRNA_P-littoralis_Contig735.44.1|Name=mRNA_P-littoralis_Contig735.44.1|organism=Pylaiella littoralis U1_48|type=CDS|length=534bp|location=Sequence derived from alignment at P-littoralis_Contig735:135861..136648+ (Pylaiella littoralis U1_48)
ATGGAAGGGGTGAAAATTCTCCTTCGGGCGTACGCGAATCCGCTCTTGTC
AGCGTACGGAAGTCTCCCGTTATATATGGCGGTCTACGATGGACATCAGA
AAGTGGTCCGCGAGCTCGTGCATTGGTACGGAACCGACCACTGTACAAGC
GACGGCGGCGCACTAGCTCTCGCAACGGCCGCTTCTCGCAAACACGTGGA
CATCGTCACCTTCCTGTGCGATGCCGGTGTGGTTGATACGGAGGGCGTGG
CCCTGTGTGCTGTCATTGAGGGCTGTAGCGAGGCGTGCGTCTACCTTCTG
CTGCGGAGACGGGGAAAGGCCAACACGGGTACGCGTGCCTACGTCAATAT
GGACCACGGTACTCTCCCGAAACCTATGACGAATTCGTGTACACAACCAA
TCTGGGAAGCTTTCATGCTCCCAGATTCGCGCGCTTGCTACTCGAAGCCG
GGGCGGACGCGACATTGGCCAGTCGGTTTCCGTACGACAGTGATGAGGGG
GAAGAAGACGAAGGTTTCATCGGCACGCCCCTAG
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