mRNA_P-littoralis_Contig735.44.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig735.44.1 vs. uniprot
Match: A0A6H5JHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE) HSP 1 Score: 242 bits (617), Expect = 4.400e-74 Identity = 137/190 (72.11%), Postives = 145/190 (76.32%), Query Frame = 3
Query: 282 GVRLPSAAETGKGQHGYACLRQYGPRYS--------------PETYDEFVY-------TTNLGSFHAPRFARLLLEAGADATLASRFPYDSDEGEEDEGFIGTPLDLATSYVRRFSPMRVHREMVQGLKGVIRLLRQEEAVHAVSWTWPIDTGRSVERASRKKSTSIARMLPLLKKRAAKSRVLLAAMSR 788
GV L +A E Y LR+ G + PETYD+FV+ T NLGSFHAPRFARLLLEAGADAT RFP DSDEGEEDE FIGTPL+LATSY RRFSPMRVHREMV+GLKGVIRLLRQEEAVHAVSWTWPIDTGRSVERASRKKSTSIARMLPLLK+RAAK RVLLAAMSR
Sbjct: 222 GVALCAAIEGCSEACVYLLLRRQGGNINVSTRAYVNMAHGTLPETYDDFVFQETPLVSTFNLGSFHAPRFARLLLEAGADATSGVRFPCDSDEGEEDEDFIGTPLELATSYFRRFSPMRVHREMVRGLKGVIRLLRQEEAVHAVSWTWPIDTGRSVERASRKKSTSIARMLPLLKRRAAKPRVLLAAMSR 411
BLAST of mRNA_P-littoralis_Contig735.44.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE) HSP 1 Score: 248 bits (632), Expect = 4.180e-73 Identity = 140/190 (73.68%), Postives = 147/190 (77.37%), Query Frame = 3
Query: 282 GVRLPSAAETGKGQHGYACLRQYGPRYS--------------PETYDEFVY-------TTNLGSFHAPRFARLLLEAGADATLASRFPYDSDEGEEDEGFIGTPLDLATSYVRRFSPMRVHREMVQGLKGVIRLLRQEEAVHAVSWTWPIDTGRSVERASRKKSTSIARMLPLLKKRAAKSRVLLAAMSR 788
GV L +A E Y LR+ G + S PETYDEFV+ T NLGSFHAPRFARLLLEAGADAT RFP DSDEGEEDEGFIGTPLDLATSY RRFSPMRVHREMV+GLKGVIRLLRQEEAVH+VSWTWPIDTGRSVERASRKKSTSIARMLPLLK+RAAK RVLLAAMSR
Sbjct: 612 GVALCAAIEGCSEACVYLLLRRQGRKASTDSRAYVNMDHGSLPETYDEFVFQEPPLVSTFNLGSFHAPRFARLLLEAGADATSGVRFPCDSDEGEEDEGFIGTPLDLATSYFRRFSPMRVHREMVRGLKGVIRLLRQEEAVHSVSWTWPIDTGRSVERASRKKSTSIARMLPLLKRRAAKPRVLLAAMSR 801
BLAST of mRNA_P-littoralis_Contig735.44.1 vs. uniprot
Match: A0A6H5L5L0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE) HSP 1 Score: 227 bits (578), Expect = 5.330e-68 Identity = 122/148 (82.43%), Postives = 127/148 (85.81%), Query Frame = 3
Query: 366 PETYDEFVY-------TTNLGSFHAPRFARLLLEAGADATLASRFPYDSDEGEEDEGFIGTPLDLATSYVRRFSPMRVHREMVQGLKGVIRLLRQEEAVHAVSWTWPIDTGRSVERASRKKSTSIARMLPLLKKRAAKSRVLLAAMSR 788
PETYDEFV+ T NLGSFHAP FARLLLEAGADAT RFP DSDEGEEDEGFIGTPLDLATSY RRFS M VHREMV LKGVIRLLRQEEAVH+VSWTWPID GRSVERASRKK TSIARM+PLLK+RAAK RVLLAA+SR
Sbjct: 318 PETYDEFVFQETPLVSTFNLGSFHAPGFARLLLEAGADATSGVRFPCDSDEGEEDEGFIGTPLDLATSYFRRFSSMSVHREMVPELKGVIRLLRQEEAVHSVSWTWPIDNGRSVERASRKKPTSIARMVPLLKRRAAKPRVLLAALSR 465
BLAST of mRNA_P-littoralis_Contig735.44.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE) HSP 1 Score: 233 bits (595), Expect = 1.310e-67 Identity = 132/190 (69.47%), Postives = 143/190 (75.26%), Query Frame = 3
Query: 282 GVRLPSAAETGKGQHGYACLRQYGPRYS--------------PETYDEFVY-------TTNLGSFHAPRFARLLLEAGADATLASRFPYDSDEGEEDEGFIGTPLDLATSYVRRFSPMRVHREMVQGLKGVIRLLRQEEAVHAVSWTWPIDTGRSVERASRKKSTSIARMLPLLKKRAAKSRVLLAAMSR 788
GV L +A E Y LR+ G + PETY+EFV+ T NLGSFHAPRFARLLLEAGADAT RFP DSDEGEEDEGFIGTPLDLATSYVRRFS M+VHREMV+GLKGVIRLL+QEEAVH+VSWTWPIDTGRS ER SRKKSTSIARM+PLLK+RAA RVLLAAMSR
Sbjct: 643 GVALCAAIEGCSEACVYLLLRRQGGNANTGTRAYVNMDHGTLPETYEEFVFQETPLVSTFNLGSFHAPRFARLLLEAGADATSGVRFPCDSDEGEEDEGFIGTPLDLATSYVRRFSTMKVHREMVRGLKGVIRLLQQEEAVHSVSWTWPIDTGRSAERVSRKKSTSIARMVPLLKRRAATLRVLLAAMSR 832
BLAST of mRNA_P-littoralis_Contig735.44.1 vs. uniprot
Match: A0A6H5JNS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE) HSP 1 Score: 119 bits (299), Expect = 8.010e-28 Identity = 73/144 (50.69%), Postives = 89/144 (61.81%), Query Frame = 1
Query: 7 GVKILLRAYANPLLSAYG--SLPLYMAVYDGHQKVVRELVHWYGTDHCTSDGGALALATAASRKHVDIVTFLCDAGVVDTEGVALCAVIEGCSEACVYLLLRRRG-KANTGTRAYVNMDHGTLPKPMTNSCTQPIWEAFMLPDS 429
GVK + A ANP+L+AY SLPL +A +G VVREL +G D C+ DGGA AL AAS+ VDIVTFL D GVVD EG+ALCA +EG E C+ LLLR +G AN RAY NM H T T P++ + PD+
Sbjct: 126 GVKGFVGAKANPILAAYDGESLPLDVAAENGQLGVVRELEQRFGIDGCSCDGGAQALVEAASQNQVDIVTFLFDNGVVDAEGIALCAAVEGRREECIELLLRTQGCNANAIARAYANMTHDT---------TLPMYSNQLFPDT 260
BLAST of mRNA_P-littoralis_Contig735.44.1 vs. uniprot
Match: D8LP44_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP44_ECTSI) HSP 1 Score: 103 bits (256), Expect = 1.050e-21 Identity = 59/119 (49.58%), Postives = 75/119 (63.03%), Query Frame = 1
Query: 1 MEGVKILLRAYANPLLSAYGSLPLYMAVYDGHQKVVRELVHWYGTDHCTSDGGALALATAASRKHVDIVTFLCDAGVVDTEGVALCAVIEGCSEACVYLLLRRRG-KANTGTRAYVNMD 354
++ VKILL+ ANP+L + PL +A + GH VV+ELV +G D C+ +G AL TAA H I+TFL DAGV DT+G ALC IEG SEAC+ LL+ RRG A+ Y N D
Sbjct: 160 LDAVKILLQERANPMLCVGPTHPLDIATHGGHLGVVQELVQRFGVDGCSDEGAIGALETAAYENHQTILTFLLDAGVKDTDGTALCDAIEGRSEACLKLLVGRRGGNAHMAESHYTNTD 278
BLAST of mRNA_P-littoralis_Contig735.44.1 vs. uniprot
Match: A0A6H5KSL5_9PHAE (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6H5KSL5_9PHAE) HSP 1 Score: 102 bits (254), Expect = 2.130e-21 Identity = 58/120 (48.33%), Postives = 77/120 (64.17%), Query Frame = 1
Query: 1 MEGVKILLRAYANPLLSAYGSLPLYMAVYDGHQKVVRELVHWYGTDHCTSDGGALALATAASRKHVDIVTFLCDAGVVDTEGVALCAVIEGCSEACVYLLLRRRGKA-NTGTRAYVNMDH 357
+E V+IL + ANPLL + PL +A + GH VV+ELV +G D C +G AL TAA H I+TFL DAGV+DT+G ALC IEG +EAC+ LL+ RRG + + R Y N+D+
Sbjct: 173 LEAVEILFQKKANPLLRVGPTHPLDIATHGGHLGVVQELVQRFGIDGCADEGAIGALETAAYENHEAIMTFLLDAGVIDTDGTALCDAIEGRNEACLKLLVSRRGGSEHMVERNYTNIDN 292
BLAST of mRNA_P-littoralis_Contig735.44.1 vs. uniprot
Match: D8LH66_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH66_ECTSI) HSP 1 Score: 73.2 bits (178), Expect = 5.190e-12 Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 3
Query: 117 RALVRNRPLYKRRRRTSSRNGRFSQTRGHRHLPVRCRCG 233
R LVRNR LYKRRRRT SRNGRFSQ+RGHRHLPVRCRCG
Sbjct: 165 RPLVRNRSLYKRRRRTGSRNGRFSQSRGHRHLPVRCRCG 203
BLAST of mRNA_P-littoralis_Contig735.44.1 vs. uniprot
Match: D7FXY7_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY7_ECTSI) HSP 1 Score: 59.7 bits (143), Expect = 1.030e-6 Identity = 38/87 (43.68%), Postives = 52/87 (59.77%), Query Frame = 1
Query: 1 MEGVKILLRAYANPLLSAY------GSLPLYMAVYDGHQKVVRELVHWYGTDHCT-SDGGALALATAASRKHVDIVTFLCDAGVVDT 240
++ V++LL A +PLL+ + SLPL +A GH +VV EL+ G C S GG AL AA KH+D++T L +AGVVDT
Sbjct: 63 VDAVRLLLLAKVDPLLTPHLGTSERASLPLDVAAGLGHLEVVNELIRQVGIGGCGGSSGGVRALQQAARNKHLDMLTVLTNAGVVDT 149 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig735.44.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig735.44.1 >prot_P-littoralis_Contig735.44.1 ID=prot_P-littoralis_Contig735.44.1|Name=mRNA_P-littoralis_Contig735.44.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=178bp MEGVKILLRAYANPLLSAYGSLPLYMAVYDGHQKVVRELVHWYGTDHCTSback to top mRNA from alignment at P-littoralis_Contig735:135861..136648+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig735.44.1 ID=mRNA_P-littoralis_Contig735.44.1|Name=mRNA_P-littoralis_Contig735.44.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=788bp|location=Sequence derived from alignment at P-littoralis_Contig735:135861..136648+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig735:135861..136648+ >mRNA_P-littoralis_Contig735.44.1 ID=mRNA_P-littoralis_Contig735.44.1|Name=mRNA_P-littoralis_Contig735.44.1|organism=Pylaiella littoralis U1_48|type=CDS|length=534bp|location=Sequence derived from alignment at P-littoralis_Contig735:135861..136648+ (Pylaiella littoralis U1_48)back to top |